data_1G76
#
_model_server_result.job_id            JO_DwF582u0xmiXthax75A 
_model_server_result.datetime_utc      '2024-12-23 10:51:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1g76 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":260}' 
#
_entry.id    1G76 
#
_exptl.entry_id    1G76 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              247.142 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "PYRIDOXAL-5'-PHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1G76 
_cell.length_a            63.28 
_cell.length_b            63.28 
_cell.length_c            124.78 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1G76 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 6_765 -x+2,-x+y+1,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 94.92 54.802088 41.593333 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C8 H10 N O6 P' 
_chem_comp.formula_weight    247.142 
_chem_comp.id                PLP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "PYRIDOXAL-5'-PHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'VITAMIN B6 Phosphate' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 PLP doub 314 n y 
N1 C6 PLP sing 315 n y 
C2 C2A PLP sing 316 n n 
C2 C3 PLP sing 317 n y 
C2A H2A1 PLP sing 318 n n 
C2A H2A2 PLP sing 319 n n 
C2A H2A3 PLP sing 320 n n 
C3 O3 PLP sing 321 n n 
C3 C4 PLP doub 322 n y 
O3 HO3 PLP sing 323 n n 
C4 C4A PLP sing 324 n n 
C4 C5 PLP sing 325 n y 
C4A O4A PLP doub 326 n n 
C4A H4A PLP sing 327 n n 
C5 C6 PLP doub 328 n y 
C5 C5A PLP sing 329 n n 
C6 H6 PLP sing 330 n n 
C5A O4P PLP sing 331 n n 
C5A H5A1 PLP sing 332 n n 
C5A H5A2 PLP sing 333 n n 
O4P P PLP sing 334 n n 
P O1P PLP doub 335 n n 
P O2P PLP sing 336 n n 
P O3P PLP sing 337 n n 
O2P HOP2 PLP sing 338 n n 
O3P HOP3 PLP sing 339 n n 
#
_atom_sites.entry_id                     1G76 
_atom_sites.fract_transf_matrix[1][1]    0.015803 
_atom_sites.fract_transf_matrix[1][2]    0.009124 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018247 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008014 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PO4 A 1 280 280 PO4 PO4 . 
C 2 PO4 A 1 290 290 PO4 PO4 . 
D 3 FMN A 1 250 250 FMN FMN . 
E 4 PLP A 1 260 260 PLP PNP . 
F 5 HOH A 1 301 301 HOH HOH . 
F 5 HOH A 2 302 302 HOH HOH . 
F 5 HOH A 3 303 303 HOH HOH . 
F 5 HOH A 4 304 304 HOH HOH . 
F 5 HOH A 5 305 305 HOH HOH . 
F 5 HOH A 6 306 306 HOH HOH . 
F 5 HOH A 7 307 307 HOH HOH . 
F 5 HOH A 8 308 308 HOH HOH . 
F 5 HOH A 9 309 309 HOH HOH . 
F 5 HOH A 10 310 310 HOH HOH . 
F 5 HOH A 11 311 311 HOH HOH . 
F 5 HOH A 12 312 312 HOH HOH . 
F 5 HOH A 13 313 313 HOH HOH . 
F 5 HOH A 14 314 314 HOH HOH . 
F 5 HOH A 15 315 315 HOH HOH . 
F 5 HOH A 16 316 316 HOH HOH . 
F 5 HOH A 17 317 317 HOH HOH . 
F 5 HOH A 18 318 318 HOH HOH . 
F 5 HOH A 19 319 319 HOH HOH . 
F 5 HOH A 20 320 320 HOH HOH . 
F 5 HOH A 21 321 321 HOH HOH . 
F 5 HOH A 22 322 322 HOH HOH . 
F 5 HOH A 23 323 323 HOH HOH . 
F 5 HOH A 24 324 324 HOH HOH . 
F 5 HOH A 25 325 325 HOH HOH . 
F 5 HOH A 26 326 326 HOH HOH . 
F 5 HOH A 27 327 327 HOH HOH . 
F 5 HOH A 28 328 328 HOH HOH . 
F 5 HOH A 29 329 329 HOH HOH . 
F 5 HOH A 30 330 330 HOH HOH . 
F 5 HOH A 31 331 331 HOH HOH . 
F 5 HOH A 32 332 332 HOH HOH . 
F 5 HOH A 33 333 333 HOH HOH . 
F 5 HOH A 34 334 334 HOH HOH . 
F 5 HOH A 35 335 335 HOH HOH . 
F 5 HOH A 36 336 336 HOH HOH . 
F 5 HOH A 37 337 337 HOH HOH . 
F 5 HOH A 38 338 338 HOH HOH . 
F 5 HOH A 39 339 339 HOH HOH . 
F 5 HOH A 40 340 340 HOH HOH . 
F 5 HOH A 41 341 341 HOH HOH . 
F 5 HOH A 42 342 342 HOH HOH . 
F 5 HOH A 43 343 343 HOH HOH . 
F 5 HOH A 44 344 344 HOH HOH . 
F 5 HOH A 45 345 345 HOH HOH . 
F 5 HOH A 46 346 346 HOH HOH . 
F 5 HOH A 47 347 347 HOH HOH . 
F 5 HOH A 48 348 348 HOH HOH . 
F 5 HOH A 49 349 349 HOH HOH . 
F 5 HOH A 50 350 350 HOH HOH . 
F 5 HOH A 51 351 351 HOH HOH . 
F 5 HOH A 52 352 352 HOH HOH . 
F 5 HOH A 53 353 353 HOH HOH . 
F 5 HOH A 54 354 354 HOH HOH . 
F 5 HOH A 55 355 355 HOH HOH . 
F 5 HOH A 56 356 356 HOH HOH . 
F 5 HOH A 57 357 357 HOH HOH . 
F 5 HOH A 58 358 358 HOH HOH . 
F 5 HOH A 59 359 359 HOH HOH . 
F 5 HOH A 60 360 360 HOH HOH . 
F 5 HOH A 61 361 361 HOH HOH . 
F 5 HOH A 62 362 362 HOH HOH . 
F 5 HOH A 63 363 363 HOH HOH . 
F 5 HOH A 64 364 364 HOH HOH . 
F 5 HOH A 65 365 365 HOH HOH . 
F 5 HOH A 66 366 366 HOH HOH . 
F 5 HOH A 67 367 367 HOH HOH . 
F 5 HOH A 68 368 368 HOH HOH . 
F 5 HOH A 69 369 369 HOH HOH . 
F 5 HOH A 70 370 370 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 PLP . . . E 4 55.247 19.645 4.206 0.98 67.64 ? N1 PLP 260 A 1 
HETATM 2 C C2 PLP . . . E 4 54.548 18.443 4.712 0.98 66.95 ? C2 PLP 260 A 1 
HETATM 3 C C2A PLP . . . E 4 53.074 18.297 4.355 0.98 66.42 ? C2A PLP 260 A 1 
HETATM 4 C C3 PLP . . . E 4 55.284 17.462 5.519 0.98 67.13 ? C3 PLP 260 A 1 
HETATM 5 O O3 PLP . . . E 4 54.652 16.353 5.99 0.98 65.8 ? O3 PLP 260 A 1 
HETATM 6 C C4 PLP . . . E 4 56.668 17.722 5.79 0.98 67.8 ? C4 PLP 260 A 1 
HETATM 7 C C4A PLP . . . E 4 57.63 16.784 6.662 0.98 67.1 ? C4A PLP 260 A 1 
HETATM 8 O O4A PLP . . . E 4 56.921 15.63 7.141 0.98 67.34 ? O4A PLP 260 A 1 
HETATM 9 C C5 PLP . . . E 4 57.354 18.903 5.307 0.98 69.11 ? C5 PLP 260 A 1 
HETATM 10 C C6 PLP . . . E 4 56.612 19.857 4.499 0.98 68.41 ? C6 PLP 260 A 1 
HETATM 11 C C5A PLP . . . E 4 58.874 19.124 5.673 0.98 71.3 ? C5A PLP 260 A 1 
HETATM 12 O O4P PLP . . . E 4 59.672 19.417 4.589 0.98 75.31 ? O4P PLP 260 A 1 
HETATM 13 P P PLP . . . E 4 60.348 18.188 3.925 0.98 77.64 ? P PLP 260 A 1 
HETATM 14 O O1P PLP . . . E 4 61.152 17.304 5.028 0.98 77.42 ? O1P PLP 260 A 1 
HETATM 15 O O2P PLP . . . E 4 61.337 18.777 2.85 0.98 77.9 ? O2P PLP 260 A 1 
HETATM 16 O O3P PLP . . . E 4 59.236 17.227 3.199 0.98 77.63 ? O3P PLP 260 A 1 
#
_model_server_stats.io_time_ms              5 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           224 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           16 
#