data_1G77 # _model_server_result.job_id gVqvMjdDquW4dxrc1VEm-g _model_server_result.datetime_utc '2024-12-23 09:14:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1g77 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":250}' # _entry.id 1G77 # _exptl.entry_id 1G77 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1G77 _cell.length_a 63.44 _cell.length_b 63.44 _cell.length_c 124.64 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1G77 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_765 -x+2,-x+y+1,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 95.16 54.940652 41.546667 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 52 A ALA 52 1_555 A N MSE 53 A MSE 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C MSE 53 A MSE 53 1_555 A N VAL 54 A VAL 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 A C GLY 78 A GLY 78 1_555 A N MSE 79 A MSE 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale4 A C MSE 79 A MSE 79 1_555 A N VAL 80 A VAL 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 A C VAL 112 A VAL 112 1_555 A N MSE 113 A MSE 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale6 A C MSE 113 A MSE 113 1_555 A N VAL 114 A VAL 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale7 A C VAL 126 A VAL 126 1_555 A N MSE 127 A MSE 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale8 A C MSE 127 A MSE 127 1_555 A N LYS 128 A LYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 1G77 _atom_sites.fract_transf_matrix[1][1] 0.015763 _atom_sites.fract_transf_matrix[1][2] 0.009101 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018201 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008023 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 280 280 PO4 PO4 . C 2 PO4 A 1 290 290 PO4 PO4 . D 3 FMN A 1 250 250 FMN FMN . E 4 PLP A 1 260 260 PLP PLP . F 5 HOH A 1 301 301 HOH HOH . F 5 HOH A 2 302 302 HOH HOH . F 5 HOH A 3 303 303 HOH HOH . F 5 HOH A 4 304 304 HOH HOH . F 5 HOH A 5 305 305 HOH HOH . F 5 HOH A 6 306 306 HOH HOH . F 5 HOH A 7 307 307 HOH HOH . F 5 HOH A 8 308 308 HOH HOH . F 5 HOH A 9 309 309 HOH HOH . F 5 HOH A 10 310 310 HOH HOH . F 5 HOH A 11 311 311 HOH HOH . F 5 HOH A 12 312 312 HOH HOH . F 5 HOH A 13 313 313 HOH HOH . F 5 HOH A 14 314 314 HOH HOH . F 5 HOH A 15 315 315 HOH HOH . F 5 HOH A 16 316 316 HOH HOH . F 5 HOH A 17 317 317 HOH HOH . F 5 HOH A 18 318 318 HOH HOH . F 5 HOH A 19 319 319 HOH HOH . F 5 HOH A 20 320 320 HOH HOH . F 5 HOH A 21 321 321 HOH HOH . F 5 HOH A 22 322 322 HOH HOH . F 5 HOH A 23 323 323 HOH HOH . F 5 HOH A 24 324 324 HOH HOH . F 5 HOH A 25 325 325 HOH HOH . F 5 HOH A 26 326 326 HOH HOH . F 5 HOH A 27 327 327 HOH HOH . F 5 HOH A 28 328 328 HOH HOH . F 5 HOH A 29 329 329 HOH HOH . F 5 HOH A 30 330 330 HOH HOH . F 5 HOH A 31 331 331 HOH HOH . F 5 HOH A 32 332 332 HOH HOH . F 5 HOH A 33 333 333 HOH HOH . F 5 HOH A 34 334 334 HOH HOH . F 5 HOH A 35 335 335 HOH HOH . F 5 HOH A 36 336 336 HOH HOH . F 5 HOH A 37 337 337 HOH HOH . F 5 HOH A 38 338 338 HOH HOH . F 5 HOH A 39 339 339 HOH HOH . F 5 HOH A 40 340 340 HOH HOH . F 5 HOH A 41 341 341 HOH HOH . F 5 HOH A 42 342 342 HOH HOH . F 5 HOH A 43 343 343 HOH HOH . F 5 HOH A 44 344 344 HOH HOH . F 5 HOH A 45 345 345 HOH HOH . F 5 HOH A 46 346 346 HOH HOH . F 5 HOH A 47 347 347 HOH HOH . F 5 HOH A 48 348 348 HOH HOH . F 5 HOH A 49 349 349 HOH HOH . F 5 HOH A 50 350 350 HOH HOH . F 5 HOH A 51 351 351 HOH HOH . F 5 HOH A 52 352 352 HOH HOH . F 5 HOH A 53 353 353 HOH HOH . F 5 HOH A 54 354 354 HOH HOH . F 5 HOH A 55 355 355 HOH HOH . F 5 HOH A 56 356 356 HOH HOH . F 5 HOH A 57 357 357 HOH HOH . F 5 HOH A 58 358 358 HOH HOH . F 5 HOH A 59 359 359 HOH HOH . F 5 HOH A 60 360 360 HOH HOH . F 5 HOH A 61 361 361 HOH HOH . F 5 HOH A 62 362 362 HOH HOH . F 5 HOH A 63 363 363 HOH HOH . F 5 HOH A 64 364 364 HOH HOH . F 5 HOH A 65 365 365 HOH HOH . F 5 HOH A 66 366 366 HOH HOH . F 5 HOH A 67 367 367 HOH HOH . F 5 HOH A 68 368 368 HOH HOH . F 5 HOH A 69 369 369 HOH HOH . F 5 HOH A 70 370 370 HOH HOH . F 5 HOH A 71 371 371 HOH HOH . F 5 HOH A 72 372 372 HOH HOH . F 5 HOH A 73 373 373 HOH HOH . F 5 HOH A 74 374 374 HOH HOH . F 5 HOH A 75 375 375 HOH HOH . F 5 HOH A 76 376 376 HOH HOH . F 5 HOH A 77 377 377 HOH HOH . F 5 HOH A 78 378 378 HOH HOH . F 5 HOH A 79 379 379 HOH HOH . F 5 HOH A 80 380 380 HOH HOH . F 5 HOH A 81 381 381 HOH HOH . F 5 HOH A 82 382 382 HOH HOH . F 5 HOH A 83 383 383 HOH HOH . F 5 HOH A 84 384 384 HOH HOH . F 5 HOH A 85 385 385 HOH HOH . F 5 HOH A 86 386 386 HOH HOH . F 5 HOH A 87 387 387 HOH HOH . F 5 HOH A 88 388 388 HOH HOH . F 5 HOH A 89 389 389 HOH HOH . F 5 HOH A 90 390 390 HOH HOH . F 5 HOH A 91 391 391 HOH HOH . F 5 HOH A 92 392 392 HOH HOH . F 5 HOH A 93 393 393 HOH HOH . F 5 HOH A 94 394 394 HOH HOH . F 5 HOH A 95 395 395 HOH HOH . F 5 HOH A 96 396 396 HOH HOH . F 5 HOH A 97 397 397 HOH HOH . F 5 HOH A 98 398 398 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . D 3 53.28 20.527 7.314 1 20.81 ? N1 FMN 250 A 1 HETATM 2 C C2 FMN . . . D 3 53.931 21.6 6.788 1 21.39 ? C2 FMN 250 A 1 HETATM 3 O O2 FMN . . . D 3 53.393 22.496 6.147 1 21.52 ? O2 FMN 250 A 1 HETATM 4 N N3 FMN . . . D 3 55.338 21.726 7.026 1 18.79 ? N3 FMN 250 A 1 HETATM 5 C C4 FMN . . . D 3 56.1 20.823 7.763 1 19.87 ? C4 FMN 250 A 1 HETATM 6 O O4 FMN . . . D 3 57.327 21.006 7.911 1 21.44 ? O4 FMN 250 A 1 HETATM 7 C C4A FMN . . . D 3 55.425 19.654 8.294 1 19.74 ? C4A FMN 250 A 1 HETATM 8 N N5 FMN . . . D 3 56.08 18.662 8.951 1 20.54 ? N5 FMN 250 A 1 HETATM 9 C C5A FMN . . . D 3 55.469 17.523 9.495 1 21.5 ? C5A FMN 250 A 1 HETATM 10 C C6 FMN . . . D 3 56.22 16.56 10.205 1 21.3 ? C6 FMN 250 A 1 HETATM 11 C C7 FMN . . . D 3 55.574 15.468 10.862 1 23.08 ? C7 FMN 250 A 1 HETATM 12 C C7M FMN . . . D 3 56.384 14.433 11.674 1 21.83 ? C7M FMN 250 A 1 HETATM 13 C C8 FMN . . . D 3 54.115 15.355 10.826 1 22.21 ? C8 FMN 250 A 1 HETATM 14 C C8M FMN . . . D 3 53.287 14.329 11.595 1 21.11 ? C8M FMN 250 A 1 HETATM 15 C C9 FMN . . . D 3 53.376 16.303 10.047 1 23.88 ? C9 FMN 250 A 1 HETATM 16 C C9A FMN . . . D 3 53.995 17.379 9.359 1 21.85 ? C9A FMN 250 A 1 HETATM 17 N N10 FMN . . . D 3 53.323 18.433 8.58 1 19.37 ? N10 FMN 250 A 1 HETATM 18 C C10 FMN . . . D 3 53.934 19.543 8.043 1 20.78 ? C10 FMN 250 A 1 HETATM 19 C C1' FMN . . . D 3 51.813 18.277 8.377 1 19.65 ? C1' FMN 250 A 1 HETATM 20 C C2' FMN . . . D 3 51.092 19.246 9.442 1 22.01 ? C2' FMN 250 A 1 HETATM 21 O O2' FMN . . . D 3 50.977 18.623 10.717 1 21.69 ? O2' FMN 250 A 1 HETATM 22 C C3' FMN . . . D 3 49.7 19.735 8.997 1 18.75 ? C3' FMN 250 A 1 HETATM 23 O O3' FMN . . . D 3 48.879 18.624 8.686 1 19.88 ? O3' FMN 250 A 1 HETATM 24 C C4' FMN . . . D 3 49.758 20.652 7.786 1 21.4 ? C4' FMN 250 A 1 HETATM 25 O O4' FMN . . . D 3 50.808 21.583 7.809 1 22.79 ? O4' FMN 250 A 1 HETATM 26 C C5' FMN . . . D 3 48.5 21.503 7.624 1 19.2 ? C5' FMN 250 A 1 HETATM 27 O O5' FMN . . . D 3 48.18 22.254 8.964 1 19.23 ? O5' FMN 250 A 1 HETATM 28 P P FMN . . . D 3 47.188 23.417 8.908 1 22.74 ? P FMN 250 A 1 HETATM 29 O O1P FMN . . . D 3 47.015 23.726 10.35 1 21.41 ? O1P FMN 250 A 1 HETATM 30 O O2P FMN . . . D 3 47.673 24.523 8.205 1 20.62 ? O2P FMN 250 A 1 HETATM 31 O O3P FMN . . . D 3 45.948 22.892 8.267 1 21.6 ? O3P FMN 250 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 389 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #