data_1G78 # _model_server_result.job_id SUCHo-ayfUCVMTk-YeerrQ _model_server_result.datetime_utc '2024-12-31 22:49:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1g78 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":250}' # _entry.id 1G78 # _exptl.entry_id 1G78 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1G78 _cell.length_a 63.4 _cell.length_b 63.4 _cell.length_c 124.44 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1G78 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_765 -x+2,-x+y+1,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 95.1 54.906011 41.48 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 52 A ALA 52 1_555 A N MSE 53 A MSE 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale2 A C MSE 53 A MSE 53 1_555 A N VAL 54 A VAL 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A C GLY 78 A GLY 78 1_555 A N MSE 79 A MSE 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale4 A C MSE 79 A MSE 79 1_555 A N VAL 80 A VAL 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale5 A C VAL 112 A VAL 112 1_555 A N MSE 113 A MSE 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale6 A C MSE 113 A MSE 113 1_555 A N VAL 114 A VAL 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale7 A C VAL 126 A VAL 126 1_555 A N MSE 127 A MSE 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale8 A C MSE 127 A MSE 127 1_555 A N LYS 128 A LYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 1G78 _atom_sites.fract_transf_matrix[1][1] 0.015773 _atom_sites.fract_transf_matrix[1][2] 0.009106 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018213 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008036 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 280 280 PO4 PO4 . C 2 PO4 A 1 290 290 PO4 PO4 . D 3 FMN A 1 250 250 FMN FMN . E 4 PLP A 1 260 260 PLP PLP . F 4 PLP A 1 270 270 PLP PLP . G 5 HOH A 1 301 301 HOH HOH . G 5 HOH A 2 302 302 HOH HOH . G 5 HOH A 3 303 303 HOH HOH . G 5 HOH A 4 304 304 HOH HOH . G 5 HOH A 5 305 305 HOH HOH . G 5 HOH A 6 306 306 HOH HOH . G 5 HOH A 7 307 307 HOH HOH . G 5 HOH A 8 308 308 HOH HOH . G 5 HOH A 9 310 310 HOH HOH . G 5 HOH A 10 311 311 HOH HOH . G 5 HOH A 11 313 313 HOH HOH . G 5 HOH A 12 315 315 HOH HOH . G 5 HOH A 13 316 316 HOH HOH . G 5 HOH A 14 318 318 HOH HOH . G 5 HOH A 15 319 319 HOH HOH . G 5 HOH A 16 320 320 HOH HOH . G 5 HOH A 17 321 321 HOH HOH . G 5 HOH A 18 322 322 HOH HOH . G 5 HOH A 19 323 323 HOH HOH . G 5 HOH A 20 324 324 HOH HOH . G 5 HOH A 21 327 327 HOH HOH . G 5 HOH A 22 330 330 HOH HOH . G 5 HOH A 23 333 333 HOH HOH . G 5 HOH A 24 334 334 HOH HOH . G 5 HOH A 25 335 335 HOH HOH . G 5 HOH A 26 337 337 HOH HOH . G 5 HOH A 27 340 340 HOH HOH . G 5 HOH A 28 341 341 HOH HOH . G 5 HOH A 29 342 342 HOH HOH . G 5 HOH A 30 343 343 HOH HOH . G 5 HOH A 31 345 345 HOH HOH . G 5 HOH A 32 346 346 HOH HOH . G 5 HOH A 33 347 347 HOH HOH . G 5 HOH A 34 349 349 HOH HOH . G 5 HOH A 35 350 350 HOH HOH . G 5 HOH A 36 351 351 HOH HOH . G 5 HOH A 37 353 353 HOH HOH . G 5 HOH A 38 356 356 HOH HOH . G 5 HOH A 39 358 358 HOH HOH . G 5 HOH A 40 359 359 HOH HOH . G 5 HOH A 41 366 366 HOH HOH . G 5 HOH A 42 368 368 HOH HOH . G 5 HOH A 43 371 371 HOH HOH . G 5 HOH A 44 386 386 HOH HOH . G 5 HOH A 45 388 388 HOH HOH . G 5 HOH A 46 389 389 HOH HOH . G 5 HOH A 47 407 407 HOH HOH . G 5 HOH A 48 413 413 HOH HOH . G 5 HOH A 49 415 415 HOH HOH . G 5 HOH A 50 426 426 HOH HOH . G 5 HOH A 51 431 431 HOH HOH . G 5 HOH A 52 443 443 HOH HOH . G 5 HOH A 53 449 449 HOH HOH . G 5 HOH A 54 454 454 HOH HOH . G 5 HOH A 55 464 464 HOH HOH . G 5 HOH A 56 468 468 HOH HOH . G 5 HOH A 57 469 469 HOH HOH . G 5 HOH A 58 471 471 HOH HOH . G 5 HOH A 59 472 472 HOH HOH . G 5 HOH A 60 473 473 HOH HOH . G 5 HOH A 61 474 474 HOH HOH . G 5 HOH A 62 476 476 HOH HOH . G 5 HOH A 63 478 478 HOH HOH . G 5 HOH A 64 479 479 HOH HOH . G 5 HOH A 65 480 480 HOH HOH . G 5 HOH A 66 481 481 HOH HOH . G 5 HOH A 67 483 483 HOH HOH . G 5 HOH A 68 484 484 HOH HOH . G 5 HOH A 69 485 485 HOH HOH . G 5 HOH A 70 486 486 HOH HOH . G 5 HOH A 71 487 487 HOH HOH . G 5 HOH A 72 488 488 HOH HOH . G 5 HOH A 73 489 489 HOH HOH . G 5 HOH A 74 490 490 HOH HOH . G 5 HOH A 75 491 491 HOH HOH . G 5 HOH A 76 492 492 HOH HOH . G 5 HOH A 77 493 493 HOH HOH . G 5 HOH A 78 494 494 HOH HOH . G 5 HOH A 79 495 495 HOH HOH . G 5 HOH A 80 496 496 HOH HOH . G 5 HOH A 81 497 497 HOH HOH . G 5 HOH A 82 498 498 HOH HOH . G 5 HOH A 83 499 499 HOH HOH . G 5 HOH A 84 500 500 HOH HOH . G 5 HOH A 85 501 501 HOH HOH . G 5 HOH A 86 502 502 HOH HOH . G 5 HOH A 87 503 503 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . D 3 53.173 20.475 7.345 1 29.05 ? N1 FMN 250 A 1 HETATM 2 C C2 FMN . . . D 3 53.813 21.556 6.852 1 28.53 ? C2 FMN 250 A 1 HETATM 3 O O2 FMN . . . D 3 53.268 22.427 6.203 1 29.04 ? O2 FMN 250 A 1 HETATM 4 N N3 FMN . . . D 3 55.207 21.704 7.101 1 24.5 ? N3 FMN 250 A 1 HETATM 5 C C4 FMN . . . D 3 55.984 20.81 7.797 1 25.86 ? C4 FMN 250 A 1 HETATM 6 O O4 FMN . . . D 3 57.186 21.048 7.953 1 29.07 ? O4 FMN 250 A 1 HETATM 7 C C4A FMN . . . D 3 55.341 19.612 8.321 1 28.05 ? C4A FMN 250 A 1 HETATM 8 N N5 FMN . . . D 3 56.011 18.636 8.988 1 27.37 ? N5 FMN 250 A 1 HETATM 9 C C5A FMN . . . D 3 55.404 17.509 9.537 1 29.12 ? C5A FMN 250 A 1 HETATM 10 C C6 FMN . . . D 3 56.179 16.541 10.264 1 29.3 ? C6 FMN 250 A 1 HETATM 11 C C7 FMN . . . D 3 55.552 15.448 10.913 1 29.84 ? C7 FMN 250 A 1 HETATM 12 C C7M FMN . . . D 3 56.369 14.43 11.745 1 30.88 ? C7M FMN 250 A 1 HETATM 13 C C8 FMN . . . D 3 54.077 15.297 10.854 1 31.36 ? C8 FMN 250 A 1 HETATM 14 C C8M FMN . . . D 3 53.272 14.25 11.614 1 30.21 ? C8M FMN 250 A 1 HETATM 15 C C9 FMN . . . D 3 53.312 16.241 10.066 1 31.41 ? C9 FMN 250 A 1 HETATM 16 C C9A FMN . . . D 3 53.911 17.339 9.399 1 29.32 ? C9A FMN 250 A 1 HETATM 17 N N10 FMN . . . D 3 53.218 18.383 8.62 1 29.06 ? N10 FMN 250 A 1 HETATM 18 C C10 FMN . . . D 3 53.84 19.49 8.076 1 27.73 ? C10 FMN 250 A 1 HETATM 19 C C1' FMN . . . D 3 51.714 18.234 8.408 1 26.52 ? C1' FMN 250 A 1 HETATM 20 C C2' FMN . . . D 3 51.019 19.271 9.378 1 29.28 ? C2' FMN 250 A 1 HETATM 21 O O2' FMN . . . D 3 50.947 18.725 10.686 1 31.98 ? O2' FMN 250 A 1 HETATM 22 C C3' FMN . . . D 3 49.629 19.712 8.929 1 29.91 ? C3' FMN 250 A 1 HETATM 23 O O3' FMN . . . D 3 48.829 18.532 8.681 1 25.77 ? O3' FMN 250 A 1 HETATM 24 C C4' FMN . . . D 3 49.668 20.641 7.696 1 29.8 ? C4' FMN 250 A 1 HETATM 25 O O4' FMN . . . D 3 50.718 21.614 7.694 1 31.98 ? O4' FMN 250 A 1 HETATM 26 C C5' FMN . . . D 3 48.353 21.422 7.619 1 32.07 ? C5' FMN 250 A 1 HETATM 27 O O5' FMN . . . D 3 48.082 22.192 8.983 1 29.87 ? O5' FMN 250 A 1 HETATM 28 P P FMN . . . D 3 47.09 23.372 8.966 1 29.41 ? P FMN 250 A 1 HETATM 29 O O1P FMN . . . D 3 46.879 23.685 10.455 1 29.1 ? O1P FMN 250 A 1 HETATM 30 O O2P FMN . . . D 3 47.556 24.482 8.277 1 28.5 ? O2P FMN 250 A 1 HETATM 31 O O3P FMN . . . D 3 45.827 22.933 8.3 1 29.38 ? O3P FMN 250 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 31 #