data_1G79 # _model_server_result.job_id iYwfSemjE2kcHSrAsqFX5w _model_server_result.datetime_utc '2024-10-10 23:35:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1g79 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":250}' # _entry.id 1G79 # _exptl.entry_id 1G79 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1G79 _cell.length_a 63.72 _cell.length_b 63.72 _cell.length_c 124.36 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1G79 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_765 -x+2,-x+y+1,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 95.58 55.183139 41.453333 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 92 n n N1 C10 FMN doub 93 n n C2 O2 FMN doub 94 n n C2 N3 FMN sing 95 n n N3 C4 FMN sing 96 n n N3 HN3 FMN sing 97 n n C4 O4 FMN doub 98 n n C4 C4A FMN sing 99 n n C4A N5 FMN doub 100 n n C4A C10 FMN sing 101 n n N5 C5A FMN sing 102 n n C5A C6 FMN doub 103 n y C5A C9A FMN sing 104 n y C6 C7 FMN sing 105 n y C6 H6 FMN sing 106 n n C7 C7M FMN sing 107 n n C7 C8 FMN doub 108 n y C7M HM71 FMN sing 109 n n C7M HM72 FMN sing 110 n n C7M HM73 FMN sing 111 n n C8 C8M FMN sing 112 n n C8 C9 FMN sing 113 n y C8M HM81 FMN sing 114 n n C8M HM82 FMN sing 115 n n C8M HM83 FMN sing 116 n n C9 C9A FMN doub 117 n y C9 H9 FMN sing 118 n n C9A N10 FMN sing 119 n n N10 C10 FMN sing 120 n n N10 C1' FMN sing 121 n n C1' C2' FMN sing 122 n n C1' "H1'1" FMN sing 123 n n C1' "H1'2" FMN sing 124 n n C2' O2' FMN sing 125 n n C2' C3' FMN sing 126 n n C2' H2' FMN sing 127 n n O2' HO2' FMN sing 128 n n C3' O3' FMN sing 129 n n C3' C4' FMN sing 130 n n C3' H3' FMN sing 131 n n O3' HO3' FMN sing 132 n n C4' O4' FMN sing 133 n n C4' C5' FMN sing 134 n n C4' H4' FMN sing 135 n n O4' HO4' FMN sing 136 n n C5' O5' FMN sing 137 n n C5' "H5'1" FMN sing 138 n n C5' "H5'2" FMN sing 139 n n O5' P FMN sing 140 n n P O1P FMN doub 141 n n P O2P FMN sing 142 n n P O3P FMN sing 143 n n O2P HOP2 FMN sing 144 n n O3P HOP3 FMN sing 145 n n # _atom_sites.entry_id 1G79 _atom_sites.fract_transf_matrix[1][1] 0.015694 _atom_sites.fract_transf_matrix[1][2] 0.009061 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018121 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008041 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 280 280 PO4 PO4 . C 2 PO4 A 1 290 290 PO4 PO4 . D 3 FMN A 1 250 250 FMN FMN . E 4 PLP A 1 260 260 PLP PLP . F 4 PLP A 1 270 270 PLP PLP . G 5 BME A 1 300 300 BME SEO . H 6 HOH A 1 301 301 HOH HOH . H 6 HOH A 2 302 302 HOH HOH . H 6 HOH A 3 303 303 HOH HOH . H 6 HOH A 4 304 304 HOH HOH . H 6 HOH A 5 305 305 HOH HOH . H 6 HOH A 6 306 306 HOH HOH . H 6 HOH A 7 307 307 HOH HOH . H 6 HOH A 8 308 308 HOH HOH . H 6 HOH A 9 309 309 HOH HOH . H 6 HOH A 10 310 310 HOH HOH . H 6 HOH A 11 311 311 HOH HOH . H 6 HOH A 12 312 312 HOH HOH . H 6 HOH A 13 313 313 HOH HOH . H 6 HOH A 14 314 314 HOH HOH . H 6 HOH A 15 315 315 HOH HOH . H 6 HOH A 16 316 316 HOH HOH . H 6 HOH A 17 317 317 HOH HOH . H 6 HOH A 18 318 318 HOH HOH . H 6 HOH A 19 319 319 HOH HOH . H 6 HOH A 20 320 320 HOH HOH . H 6 HOH A 21 321 321 HOH HOH . H 6 HOH A 22 322 322 HOH HOH . H 6 HOH A 23 323 323 HOH HOH . H 6 HOH A 24 324 324 HOH HOH . H 6 HOH A 25 325 325 HOH HOH . H 6 HOH A 26 326 326 HOH HOH . H 6 HOH A 27 327 327 HOH HOH . H 6 HOH A 28 328 328 HOH HOH . H 6 HOH A 29 329 329 HOH HOH . H 6 HOH A 30 330 330 HOH HOH . H 6 HOH A 31 331 331 HOH HOH . H 6 HOH A 32 332 332 HOH HOH . H 6 HOH A 33 333 333 HOH HOH . H 6 HOH A 34 334 334 HOH HOH . H 6 HOH A 35 335 335 HOH HOH . H 6 HOH A 36 336 336 HOH HOH . H 6 HOH A 37 337 337 HOH HOH . H 6 HOH A 38 338 338 HOH HOH . H 6 HOH A 39 339 339 HOH HOH . H 6 HOH A 40 340 340 HOH HOH . H 6 HOH A 41 341 341 HOH HOH . H 6 HOH A 42 342 342 HOH HOH . H 6 HOH A 43 343 343 HOH HOH . H 6 HOH A 44 344 344 HOH HOH . H 6 HOH A 45 345 345 HOH HOH . H 6 HOH A 46 346 346 HOH HOH . H 6 HOH A 47 347 347 HOH HOH . H 6 HOH A 48 348 348 HOH HOH . H 6 HOH A 49 349 349 HOH HOH . H 6 HOH A 50 350 350 HOH HOH . H 6 HOH A 51 351 351 HOH HOH . H 6 HOH A 52 352 352 HOH HOH . H 6 HOH A 53 353 353 HOH HOH . H 6 HOH A 54 354 354 HOH HOH . H 6 HOH A 55 355 355 HOH HOH . H 6 HOH A 56 356 356 HOH HOH . H 6 HOH A 57 357 357 HOH HOH . H 6 HOH A 58 358 358 HOH HOH . H 6 HOH A 59 359 359 HOH HOH . H 6 HOH A 60 360 360 HOH HOH . H 6 HOH A 61 361 361 HOH HOH . H 6 HOH A 62 362 362 HOH HOH . H 6 HOH A 63 363 363 HOH HOH . H 6 HOH A 64 364 364 HOH HOH . H 6 HOH A 65 365 365 HOH HOH . H 6 HOH A 66 366 366 HOH HOH . H 6 HOH A 67 367 367 HOH HOH . H 6 HOH A 68 368 368 HOH HOH . H 6 HOH A 69 369 369 HOH HOH . H 6 HOH A 70 370 370 HOH HOH . H 6 HOH A 71 371 371 HOH HOH . H 6 HOH A 72 372 372 HOH HOH . H 6 HOH A 73 373 373 HOH HOH . H 6 HOH A 74 374 374 HOH HOH . H 6 HOH A 75 375 375 HOH HOH . H 6 HOH A 76 376 376 HOH HOH . H 6 HOH A 77 377 377 HOH HOH . H 6 HOH A 78 378 378 HOH HOH . H 6 HOH A 79 379 379 HOH HOH . H 6 HOH A 80 380 380 HOH HOH . H 6 HOH A 81 381 381 HOH HOH . H 6 HOH A 82 382 382 HOH HOH . H 6 HOH A 83 383 383 HOH HOH . H 6 HOH A 84 384 384 HOH HOH . H 6 HOH A 85 385 385 HOH HOH . H 6 HOH A 86 386 386 HOH HOH . H 6 HOH A 87 387 387 HOH HOH . H 6 HOH A 88 388 388 HOH HOH . H 6 HOH A 89 389 389 HOH HOH . H 6 HOH A 90 390 390 HOH HOH . H 6 HOH A 91 391 391 HOH HOH . H 6 HOH A 92 392 392 HOH HOH . H 6 HOH A 93 393 393 HOH HOH . H 6 HOH A 94 394 394 HOH HOH . H 6 HOH A 95 395 395 HOH HOH . H 6 HOH A 96 396 396 HOH HOH . H 6 HOH A 97 397 397 HOH HOH . H 6 HOH A 98 398 398 HOH HOH . H 6 HOH A 99 399 399 HOH HOH . H 6 HOH A 100 400 400 HOH HOH . H 6 HOH A 101 401 401 HOH HOH . H 6 HOH A 102 402 402 HOH HOH . H 6 HOH A 103 403 403 HOH HOH . H 6 HOH A 104 404 404 HOH HOH . H 6 HOH A 105 405 405 HOH HOH . H 6 HOH A 106 406 406 HOH HOH . H 6 HOH A 107 407 407 HOH HOH . H 6 HOH A 108 408 408 HOH HOH . H 6 HOH A 109 409 409 HOH HOH . H 6 HOH A 110 410 410 HOH HOH . H 6 HOH A 111 411 411 HOH HOH . H 6 HOH A 112 412 412 HOH HOH . H 6 HOH A 113 413 413 HOH HOH . H 6 HOH A 114 414 414 HOH HOH . H 6 HOH A 115 415 415 HOH HOH . H 6 HOH A 116 416 416 HOH HOH . H 6 HOH A 117 417 417 HOH HOH . H 6 HOH A 118 418 418 HOH HOH . H 6 HOH A 119 419 419 HOH HOH . H 6 HOH A 120 420 420 HOH HOH . H 6 HOH A 121 421 421 HOH HOH . H 6 HOH A 122 422 422 HOH HOH . H 6 HOH A 123 423 423 HOH HOH . H 6 HOH A 124 424 424 HOH HOH . H 6 HOH A 125 425 425 HOH HOH . H 6 HOH A 126 426 426 HOH HOH . H 6 HOH A 127 427 427 HOH HOH . H 6 HOH A 128 428 428 HOH HOH . H 6 HOH A 129 429 429 HOH HOH . H 6 HOH A 130 430 430 HOH HOH . H 6 HOH A 131 431 431 HOH HOH . H 6 HOH A 132 432 432 HOH HOH . H 6 HOH A 133 433 433 HOH HOH . H 6 HOH A 134 434 434 HOH HOH . H 6 HOH A 135 435 435 HOH HOH . H 6 HOH A 136 436 436 HOH HOH . H 6 HOH A 137 437 437 HOH HOH . H 6 HOH A 138 438 438 HOH HOH . H 6 HOH A 139 439 439 HOH HOH . H 6 HOH A 140 440 440 HOH HOH . H 6 HOH A 141 441 441 HOH HOH . H 6 HOH A 142 442 442 HOH HOH . H 6 HOH A 143 443 443 HOH HOH . H 6 HOH A 144 444 444 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . D 3 53.53 20.602 7.271 1 22.9 ? N1 FMN 250 A 1 HETATM 2 C C2 FMN . . . D 3 54.131 21.679 6.78 1 22.95 ? C2 FMN 250 A 1 HETATM 3 O O2 FMN . . . D 3 53.523 22.497 6.171 1 23.1 ? O2 FMN 250 A 1 HETATM 4 N N3 FMN . . . D 3 55.532 21.845 7 1 21.25 ? N3 FMN 250 A 1 HETATM 5 C C4 FMN . . . D 3 56.307 20.917 7.704 1 21.15 ? C4 FMN 250 A 1 HETATM 6 O O4 FMN . . . D 3 57.501 21.104 7.872 1 23.73 ? O4 FMN 250 A 1 HETATM 7 C C4A FMN . . . D 3 55.657 19.724 8.224 1 22.09 ? C4A FMN 250 A 1 HETATM 8 N N5 FMN . . . D 3 56.324 18.733 8.898 1 22.51 ? N5 FMN 250 A 1 HETATM 9 C C5A FMN . . . D 3 55.668 17.599 9.443 1 23.97 ? C5A FMN 250 A 1 HETATM 10 C C6 FMN . . . D 3 56.395 16.647 10.159 1 24.19 ? C6 FMN 250 A 1 HETATM 11 C C7 FMN . . . D 3 55.788 15.563 10.794 1 25.37 ? C7 FMN 250 A 1 HETATM 12 C C7M FMN . . . D 3 56.639 14.535 11.591 1 23.34 ? C7M FMN 250 A 1 HETATM 13 C C8 FMN . . . D 3 54.329 15.401 10.747 1 24.29 ? C8 FMN 250 A 1 HETATM 14 C C8M FMN . . . D 3 53.558 14.314 11.494 1 25.75 ? C8M FMN 250 A 1 HETATM 15 C C9 FMN . . . D 3 53.557 16.336 9.965 1 24.74 ? C9 FMN 250 A 1 HETATM 16 C C9A FMN . . . D 3 54.169 17.444 9.283 1 23.84 ? C9A FMN 250 A 1 HETATM 17 N N10 FMN . . . D 3 53.517 18.503 8.511 1 21.44 ? N10 FMN 250 A 1 HETATM 18 C C10 FMN . . . D 3 54.16 19.607 7.981 1 22.75 ? C10 FMN 250 A 1 HETATM 19 C C1' FMN . . . D 3 52.009 18.38 8.32 1 20.37 ? C1' FMN 250 A 1 HETATM 20 C C2' FMN . . . D 3 51.26 19.289 9.399 1 20.33 ? C2' FMN 250 A 1 HETATM 21 O O2' FMN . . . D 3 51.177 18.682 10.69 1 23.15 ? O2' FMN 250 A 1 HETATM 22 C C3' FMN . . . D 3 49.874 19.752 8.974 1 20.36 ? C3' FMN 250 A 1 HETATM 23 O O3' FMN . . . D 3 49.094 18.639 8.571 1 19.76 ? O3' FMN 250 A 1 HETATM 24 C C4' FMN . . . D 3 49.915 20.702 7.787 1 22.51 ? C4' FMN 250 A 1 HETATM 25 O O4' FMN . . . D 3 50.974 21.647 7.786 1 22.7 ? O4' FMN 250 A 1 HETATM 26 C C5' FMN . . . D 3 48.624 21.501 7.644 1 22.86 ? C5' FMN 250 A 1 HETATM 27 O O5' FMN . . . D 3 48.35 22.307 8.986 1 23.15 ? O5' FMN 250 A 1 HETATM 28 P P FMN . . . D 3 47.324 23.44 8.874 1 23.12 ? P FMN 250 A 1 HETATM 29 O O1P FMN . . . D 3 47.107 23.856 10.328 1 21.56 ? O1P FMN 250 A 1 HETATM 30 O O2P FMN . . . D 3 47.799 24.549 8.113 1 21.07 ? O2P FMN 250 A 1 HETATM 31 O O3P FMN . . . D 3 46.082 22.916 8.206 1 22.22 ? O3P FMN 250 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #