data_1G79
#
_model_server_result.job_id            Xmh7MBBpdw2SitsjFTDklw 
_model_server_result.datetime_utc      '2024-12-22 17:19:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1g79 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":260}' 
#
_entry.id    1G79 
#
_exptl.entry_id    1G79 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              247.142 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "PYRIDOXAL-5'-PHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1G79 
_cell.length_a            63.72 
_cell.length_b            63.72 
_cell.length_c            124.36 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1G79 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 6_765 -x+2,-x+y+1,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 95.58 55.183139 41.453333 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
#
_chem_comp.formula           'C8 H10 N O6 P' 
_chem_comp.formula_weight    247.142 
_chem_comp.id                PLP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "PYRIDOXAL-5'-PHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'VITAMIN B6 Phosphate' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 PLP doub 323 n y 
N1 C6 PLP sing 324 n y 
C2 C2A PLP sing 325 n n 
C2 C3 PLP sing 326 n y 
C2A H2A1 PLP sing 327 n n 
C2A H2A2 PLP sing 328 n n 
C2A H2A3 PLP sing 329 n n 
C3 O3 PLP sing 330 n n 
C3 C4 PLP doub 331 n y 
O3 HO3 PLP sing 332 n n 
C4 C4A PLP sing 333 n n 
C4 C5 PLP sing 334 n y 
C4A O4A PLP doub 335 n n 
C4A H4A PLP sing 336 n n 
C5 C6 PLP doub 337 n y 
C5 C5A PLP sing 338 n n 
C6 H6 PLP sing 339 n n 
C5A O4P PLP sing 340 n n 
C5A H5A1 PLP sing 341 n n 
C5A H5A2 PLP sing 342 n n 
O4P P PLP sing 343 n n 
P O1P PLP doub 344 n n 
P O2P PLP sing 345 n n 
P O3P PLP sing 346 n n 
O2P HOP2 PLP sing 347 n n 
O3P HOP3 PLP sing 348 n n 
#
_atom_sites.entry_id                     1G79 
_atom_sites.fract_transf_matrix[1][1]    0.015694 
_atom_sites.fract_transf_matrix[1][2]    0.009061 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018121 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008041 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PO4 A 1 280 280 PO4 PO4 . 
C 2 PO4 A 1 290 290 PO4 PO4 . 
D 3 FMN A 1 250 250 FMN FMN . 
E 4 PLP A 1 260 260 PLP PLP . 
F 4 PLP A 1 270 270 PLP PLP . 
G 5 BME A 1 300 300 BME SEO . 
H 6 HOH A 1 301 301 HOH HOH . 
H 6 HOH A 2 302 302 HOH HOH . 
H 6 HOH A 3 303 303 HOH HOH . 
H 6 HOH A 4 304 304 HOH HOH . 
H 6 HOH A 5 305 305 HOH HOH . 
H 6 HOH A 6 306 306 HOH HOH . 
H 6 HOH A 7 307 307 HOH HOH . 
H 6 HOH A 8 308 308 HOH HOH . 
H 6 HOH A 9 309 309 HOH HOH . 
H 6 HOH A 10 310 310 HOH HOH . 
H 6 HOH A 11 311 311 HOH HOH . 
H 6 HOH A 12 312 312 HOH HOH . 
H 6 HOH A 13 313 313 HOH HOH . 
H 6 HOH A 14 314 314 HOH HOH . 
H 6 HOH A 15 315 315 HOH HOH . 
H 6 HOH A 16 316 316 HOH HOH . 
H 6 HOH A 17 317 317 HOH HOH . 
H 6 HOH A 18 318 318 HOH HOH . 
H 6 HOH A 19 319 319 HOH HOH . 
H 6 HOH A 20 320 320 HOH HOH . 
H 6 HOH A 21 321 321 HOH HOH . 
H 6 HOH A 22 322 322 HOH HOH . 
H 6 HOH A 23 323 323 HOH HOH . 
H 6 HOH A 24 324 324 HOH HOH . 
H 6 HOH A 25 325 325 HOH HOH . 
H 6 HOH A 26 326 326 HOH HOH . 
H 6 HOH A 27 327 327 HOH HOH . 
H 6 HOH A 28 328 328 HOH HOH . 
H 6 HOH A 29 329 329 HOH HOH . 
H 6 HOH A 30 330 330 HOH HOH . 
H 6 HOH A 31 331 331 HOH HOH . 
H 6 HOH A 32 332 332 HOH HOH . 
H 6 HOH A 33 333 333 HOH HOH . 
H 6 HOH A 34 334 334 HOH HOH . 
H 6 HOH A 35 335 335 HOH HOH . 
H 6 HOH A 36 336 336 HOH HOH . 
H 6 HOH A 37 337 337 HOH HOH . 
H 6 HOH A 38 338 338 HOH HOH . 
H 6 HOH A 39 339 339 HOH HOH . 
H 6 HOH A 40 340 340 HOH HOH . 
H 6 HOH A 41 341 341 HOH HOH . 
H 6 HOH A 42 342 342 HOH HOH . 
H 6 HOH A 43 343 343 HOH HOH . 
H 6 HOH A 44 344 344 HOH HOH . 
H 6 HOH A 45 345 345 HOH HOH . 
H 6 HOH A 46 346 346 HOH HOH . 
H 6 HOH A 47 347 347 HOH HOH . 
H 6 HOH A 48 348 348 HOH HOH . 
H 6 HOH A 49 349 349 HOH HOH . 
H 6 HOH A 50 350 350 HOH HOH . 
H 6 HOH A 51 351 351 HOH HOH . 
H 6 HOH A 52 352 352 HOH HOH . 
H 6 HOH A 53 353 353 HOH HOH . 
H 6 HOH A 54 354 354 HOH HOH . 
H 6 HOH A 55 355 355 HOH HOH . 
H 6 HOH A 56 356 356 HOH HOH . 
H 6 HOH A 57 357 357 HOH HOH . 
H 6 HOH A 58 358 358 HOH HOH . 
H 6 HOH A 59 359 359 HOH HOH . 
H 6 HOH A 60 360 360 HOH HOH . 
H 6 HOH A 61 361 361 HOH HOH . 
H 6 HOH A 62 362 362 HOH HOH . 
H 6 HOH A 63 363 363 HOH HOH . 
H 6 HOH A 64 364 364 HOH HOH . 
H 6 HOH A 65 365 365 HOH HOH . 
H 6 HOH A 66 366 366 HOH HOH . 
H 6 HOH A 67 367 367 HOH HOH . 
H 6 HOH A 68 368 368 HOH HOH . 
H 6 HOH A 69 369 369 HOH HOH . 
H 6 HOH A 70 370 370 HOH HOH . 
H 6 HOH A 71 371 371 HOH HOH . 
H 6 HOH A 72 372 372 HOH HOH . 
H 6 HOH A 73 373 373 HOH HOH . 
H 6 HOH A 74 374 374 HOH HOH . 
H 6 HOH A 75 375 375 HOH HOH . 
H 6 HOH A 76 376 376 HOH HOH . 
H 6 HOH A 77 377 377 HOH HOH . 
H 6 HOH A 78 378 378 HOH HOH . 
H 6 HOH A 79 379 379 HOH HOH . 
H 6 HOH A 80 380 380 HOH HOH . 
H 6 HOH A 81 381 381 HOH HOH . 
H 6 HOH A 82 382 382 HOH HOH . 
H 6 HOH A 83 383 383 HOH HOH . 
H 6 HOH A 84 384 384 HOH HOH . 
H 6 HOH A 85 385 385 HOH HOH . 
H 6 HOH A 86 386 386 HOH HOH . 
H 6 HOH A 87 387 387 HOH HOH . 
H 6 HOH A 88 388 388 HOH HOH . 
H 6 HOH A 89 389 389 HOH HOH . 
H 6 HOH A 90 390 390 HOH HOH . 
H 6 HOH A 91 391 391 HOH HOH . 
H 6 HOH A 92 392 392 HOH HOH . 
H 6 HOH A 93 393 393 HOH HOH . 
H 6 HOH A 94 394 394 HOH HOH . 
H 6 HOH A 95 395 395 HOH HOH . 
H 6 HOH A 96 396 396 HOH HOH . 
H 6 HOH A 97 397 397 HOH HOH . 
H 6 HOH A 98 398 398 HOH HOH . 
H 6 HOH A 99 399 399 HOH HOH . 
H 6 HOH A 100 400 400 HOH HOH . 
H 6 HOH A 101 401 401 HOH HOH . 
H 6 HOH A 102 402 402 HOH HOH . 
H 6 HOH A 103 403 403 HOH HOH . 
H 6 HOH A 104 404 404 HOH HOH . 
H 6 HOH A 105 405 405 HOH HOH . 
H 6 HOH A 106 406 406 HOH HOH . 
H 6 HOH A 107 407 407 HOH HOH . 
H 6 HOH A 108 408 408 HOH HOH . 
H 6 HOH A 109 409 409 HOH HOH . 
H 6 HOH A 110 410 410 HOH HOH . 
H 6 HOH A 111 411 411 HOH HOH . 
H 6 HOH A 112 412 412 HOH HOH . 
H 6 HOH A 113 413 413 HOH HOH . 
H 6 HOH A 114 414 414 HOH HOH . 
H 6 HOH A 115 415 415 HOH HOH . 
H 6 HOH A 116 416 416 HOH HOH . 
H 6 HOH A 117 417 417 HOH HOH . 
H 6 HOH A 118 418 418 HOH HOH . 
H 6 HOH A 119 419 419 HOH HOH . 
H 6 HOH A 120 420 420 HOH HOH . 
H 6 HOH A 121 421 421 HOH HOH . 
H 6 HOH A 122 422 422 HOH HOH . 
H 6 HOH A 123 423 423 HOH HOH . 
H 6 HOH A 124 424 424 HOH HOH . 
H 6 HOH A 125 425 425 HOH HOH . 
H 6 HOH A 126 426 426 HOH HOH . 
H 6 HOH A 127 427 427 HOH HOH . 
H 6 HOH A 128 428 428 HOH HOH . 
H 6 HOH A 129 429 429 HOH HOH . 
H 6 HOH A 130 430 430 HOH HOH . 
H 6 HOH A 131 431 431 HOH HOH . 
H 6 HOH A 132 432 432 HOH HOH . 
H 6 HOH A 133 433 433 HOH HOH . 
H 6 HOH A 134 434 434 HOH HOH . 
H 6 HOH A 135 435 435 HOH HOH . 
H 6 HOH A 136 436 436 HOH HOH . 
H 6 HOH A 137 437 437 HOH HOH . 
H 6 HOH A 138 438 438 HOH HOH . 
H 6 HOH A 139 439 439 HOH HOH . 
H 6 HOH A 140 440 440 HOH HOH . 
H 6 HOH A 141 441 441 HOH HOH . 
H 6 HOH A 142 442 442 HOH HOH . 
H 6 HOH A 143 443 443 HOH HOH . 
H 6 HOH A 144 444 444 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 PLP . . . E 4 55.84 19.546 4.18 1 47.08 ? N1 PLP 260 A 1 
HETATM 2 C C2 PLP . . . E 4 54.872 18.581 4.654 1 47.14 ? C2 PLP 260 A 1 
HETATM 3 C C2A PLP . . . E 4 53.405 18.728 4.269 1 46.91 ? C2A PLP 260 A 1 
HETATM 4 C C3 PLP . . . E 4 55.317 17.507 5.479 1 46.8 ? C3 PLP 260 A 1 
HETATM 5 O O3 PLP . . . E 4 54.416 16.584 5.943 1 47.34 ? O3 PLP 260 A 1 
HETATM 6 C C4 PLP . . . E 4 56.677 17.42 5.802 1 47.71 ? C4 PLP 260 A 1 
HETATM 7 C C4A PLP . . . E 4 57.226 16.248 6.686 1 48.77 ? C4A PLP 260 A 1 
HETATM 8 O O4A PLP . . . E 4 56.484 15.317 7.134 1 53.17 ? O4A PLP 260 A 1 
HETATM 9 C C5 PLP . . . E 4 57.622 18.358 5.355 1 47.52 ? C5 PLP 260 A 1 
HETATM 10 C C6 PLP . . . E 4 57.194 19.43 4.534 1 47.89 ? C6 PLP 260 A 1 
HETATM 11 C C5A PLP . . . E 4 59.079 18.188 5.757 1 48.38 ? C5A PLP 260 A 1 
HETATM 12 O O4P PLP . . . E 4 59.915 19.159 5.209 1 48.49 ? O4P PLP 260 A 1 
HETATM 13 P P PLP . . . E 4 60.749 18.634 3.964 1 48.28 ? P PLP 260 A 1 
HETATM 14 O O1P PLP . . . E 4 61.995 17.774 4.519 1 46.13 ? O1P PLP 260 A 1 
HETATM 15 O O2P PLP . . . E 4 61.264 19.889 3.147 1 47.09 ? O2P PLP 260 A 1 
HETATM 16 O O3P PLP . . . E 4 59.838 17.696 3.029 1 47.15 ? O3P PLP 260 A 1 
#
_model_server_stats.io_time_ms              50 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           322 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           16 
#