data_1G93
#
_model_server_result.job_id            uDClBAd3jDfJbLh4k6n7Zw 
_model_server_result.datetime_utc      '2024-11-05 23:29:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1g93 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":500}' 
#
_entry.id    1G93 
#
_exptl.entry_id    1G93 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              566.302 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "URIDINE-5'-DIPHOSPHATE-GLUCOSE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1G93 
_cell.length_a            95.608 
_cell.length_b            95.608 
_cell.length_c            110.725 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1G93 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A OE1 GLU 259 A GLU 317 1_555 B C1 GAL . A GAL 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? 
metalc ? metalc1 A OH TYR 81 A TYR 139 1_555 D HG HG . A HG 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.644 ? 
metalc ? metalc2 A OD2 ASP 169 A ASP 227 1_555 C MN MN . A MN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? 
metalc ? metalc3 A OD1 ASP 169 A ASP 227 1_555 C MN MN . A MN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? 
metalc ? metalc4 E O2A UPG . A UPG 500 1_555 D HG HG . A HG 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.537 ? 
metalc ? metalc5 E O3A UPG . A UPG 500 1_555 C MN MN . A MN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.538 ? 
metalc ? metalc6 D HG HG . A HG 800 1_555 F O HOH . A HOH 1029 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.156 ? 
metalc ? metalc7 D HG HG . A HG 800 1_555 F O HOH . A HOH 1079 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.346 ? 
#
_chem_comp.formula           'C15 H24 N2 O17 P2' 
_chem_comp.formula_weight    566.302 
_chem_comp.id                UPG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "URIDINE-5'-DIPHOSPHATE-GLUCOSE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "URIDINE-5'-MONOPHOSPHATE GLUCOPYRANOSYL-MONOPHOSPHATE ESTER" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 UPG sing 382 n n 
N1 C6 UPG sing 383 n n 
N1 C1C UPG sing 384 n n 
C2 N3 UPG sing 385 n n 
C2 O2 UPG doub 386 n n 
N3 C4 UPG sing 387 n n 
N3 HN3 UPG sing 388 n n 
C4 C5 UPG sing 389 n n 
C4 O4 UPG doub 390 n n 
C5 C6 UPG doub 391 n n 
C5 H5 UPG sing 392 n n 
C6 H6 UPG sing 393 n n 
C1C C2C UPG sing 394 n n 
C1C O4C UPG sing 395 n n 
C1C H1C UPG sing 396 n n 
C2C O2C UPG sing 397 n n 
C2C C3C UPG sing 398 n n 
C2C H2C UPG sing 399 n n 
O2C HO2C UPG sing 400 n n 
C3C C4C UPG sing 401 n n 
C3C O3C UPG sing 402 n n 
C3C H3C UPG sing 403 n n 
C4C O4C UPG sing 404 n n 
C4C C5C UPG sing 405 n n 
C4C H4C UPG sing 406 n n 
O3C HO3C UPG sing 407 n n 
C5C O5C UPG sing 408 n n 
C5C H5C1 UPG sing 409 n n 
C5C H5C2 UPG sing 410 n n 
O5C PA UPG sing 411 n n 
PA O1A UPG doub 412 n n 
PA O2A UPG sing 413 n n 
PA O3A UPG sing 414 n n 
O2A HOA2 UPG sing 415 n n 
O3A PB UPG sing 416 n n 
PB O1B UPG doub 417 n n 
PB O2B UPG sing 418 n n 
PB O3B UPG sing 419 n n 
O2B HOB2 UPG sing 420 n n 
O3B C1' UPG sing 421 n n 
C1' C2' UPG sing 422 n n 
C1' O5' UPG sing 423 n n 
C1' H1' UPG sing 424 n n 
C2' C3' UPG sing 425 n n 
C2' O2' UPG sing 426 n n 
C2' H2' UPG sing 427 n n 
C3' C4' UPG sing 428 n n 
C3' O3' UPG sing 429 n n 
C3' H3' UPG sing 430 n n 
C4' C5' UPG sing 431 n n 
C4' O4' UPG sing 432 n n 
C4' H4' UPG sing 433 n n 
C5' C6' UPG sing 434 n n 
C5' O5' UPG sing 435 n n 
C5' H5' UPG sing 436 n n 
C6' O6' UPG sing 437 n n 
C6' "H6'1" UPG sing 438 n n 
C6' "H6'2" UPG sing 439 n n 
O2' HO2' UPG sing 440 n n 
O3' HO3' UPG sing 441 n n 
O4' HO4' UPG sing 442 n n 
O6' HO6' UPG sing 443 n n 
#
_atom_sites.entry_id                     1G93 
_atom_sites.fract_transf_matrix[1][1]    0.010459 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010459 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009031 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GAL A 1 502 502 GAL GAL . 
C 3 MN A 1 1000 1000 MN MN . 
D 4 HG A 1 800 800 HG HG . 
E 5 UPG A 1 500 500 UPG UPG . 
F 6 HOH A 1 1001 1 HOH HOH . 
F 6 HOH A 2 1002 2 HOH HOH . 
F 6 HOH A 3 1003 3 HOH HOH . 
F 6 HOH A 4 1004 6 HOH HOH . 
F 6 HOH A 5 1005 8 HOH HOH . 
F 6 HOH A 6 1006 9 HOH HOH . 
F 6 HOH A 7 1007 10 HOH HOH . 
F 6 HOH A 8 1008 11 HOH HOH . 
F 6 HOH A 9 1009 12 HOH HOH . 
F 6 HOH A 10 1010 13 HOH HOH . 
F 6 HOH A 11 1011 14 HOH HOH . 
F 6 HOH A 12 1012 15 HOH HOH . 
F 6 HOH A 13 1013 16 HOH HOH . 
F 6 HOH A 14 1014 17 HOH HOH . 
F 6 HOH A 15 1015 18 HOH HOH . 
F 6 HOH A 16 1016 19 HOH HOH . 
F 6 HOH A 17 1017 20 HOH HOH . 
F 6 HOH A 18 1018 21 HOH HOH . 
F 6 HOH A 19 1019 22 HOH HOH . 
F 6 HOH A 20 1020 23 HOH HOH . 
F 6 HOH A 21 1021 24 HOH HOH . 
F 6 HOH A 22 1022 25 HOH HOH . 
F 6 HOH A 23 1023 26 HOH HOH . 
F 6 HOH A 24 1024 27 HOH HOH . 
F 6 HOH A 25 1025 28 HOH HOH . 
F 6 HOH A 26 1026 30 HOH HOH . 
F 6 HOH A 27 1027 32 HOH HOH . 
F 6 HOH A 28 1028 35 HOH HOH . 
F 6 HOH A 29 1029 37 HOH HOH . 
F 6 HOH A 30 1030 38 HOH HOH . 
F 6 HOH A 31 1031 39 HOH HOH . 
F 6 HOH A 32 1032 40 HOH HOH . 
F 6 HOH A 33 1033 41 HOH HOH . 
F 6 HOH A 34 1034 42 HOH HOH . 
F 6 HOH A 35 1035 43 HOH HOH . 
F 6 HOH A 36 1036 44 HOH HOH . 
F 6 HOH A 37 1037 46 HOH HOH . 
F 6 HOH A 38 1038 47 HOH HOH . 
F 6 HOH A 39 1039 49 HOH HOH . 
F 6 HOH A 40 1040 50 HOH HOH . 
F 6 HOH A 41 1041 51 HOH HOH . 
F 6 HOH A 42 1042 52 HOH HOH . 
F 6 HOH A 43 1043 53 HOH HOH . 
F 6 HOH A 44 1044 54 HOH HOH . 
F 6 HOH A 45 1045 56 HOH HOH . 
F 6 HOH A 46 1046 57 HOH HOH . 
F 6 HOH A 47 1047 58 HOH HOH . 
F 6 HOH A 48 1048 59 HOH HOH . 
F 6 HOH A 49 1049 60 HOH HOH . 
F 6 HOH A 50 1050 61 HOH HOH . 
F 6 HOH A 51 1051 62 HOH HOH . 
F 6 HOH A 52 1052 64 HOH HOH . 
F 6 HOH A 53 1053 66 HOH HOH . 
F 6 HOH A 54 1054 67 HOH HOH . 
F 6 HOH A 55 1055 68 HOH HOH . 
F 6 HOH A 56 1056 69 HOH HOH . 
F 6 HOH A 57 1057 70 HOH HOH . 
F 6 HOH A 58 1058 71 HOH HOH . 
F 6 HOH A 59 1059 72 HOH HOH . 
F 6 HOH A 60 1060 73 HOH HOH . 
F 6 HOH A 61 1061 74 HOH HOH . 
F 6 HOH A 62 1062 75 HOH HOH . 
F 6 HOH A 63 1063 76 HOH HOH . 
F 6 HOH A 64 1064 77 HOH HOH . 
F 6 HOH A 65 1065 78 HOH HOH . 
F 6 HOH A 66 1066 79 HOH HOH . 
F 6 HOH A 67 1067 80 HOH HOH . 
F 6 HOH A 68 1068 82 HOH HOH . 
F 6 HOH A 69 1069 83 HOH HOH . 
F 6 HOH A 70 1070 84 HOH HOH . 
F 6 HOH A 71 1071 85 HOH HOH . 
F 6 HOH A 72 1072 86 HOH HOH . 
F 6 HOH A 73 1073 87 HOH HOH . 
F 6 HOH A 74 1074 88 HOH HOH . 
F 6 HOH A 75 1075 89 HOH HOH . 
F 6 HOH A 76 1076 90 HOH HOH . 
F 6 HOH A 77 1077 92 HOH HOH . 
F 6 HOH A 78 1078 93 HOH HOH . 
F 6 HOH A 79 1079 99 HOH HOH . 
F 6 HOH A 80 1080 102 HOH HOH . 
F 6 HOH A 81 1081 103 HOH HOH . 
F 6 HOH A 82 1082 105 HOH HOH . 
F 6 HOH A 83 1083 107 HOH HOH . 
F 6 HOH A 84 1084 110 HOH HOH . 
F 6 HOH A 85 1085 112 HOH HOH . 
F 6 HOH A 86 1086 113 HOH HOH . 
F 6 HOH A 87 1087 114 HOH HOH . 
F 6 HOH A 88 1088 117 HOH HOH . 
F 6 HOH A 89 1089 121 HOH HOH . 
F 6 HOH A 90 1090 126 HOH HOH . 
F 6 HOH A 91 1091 127 HOH HOH . 
F 6 HOH A 92 1092 128 HOH HOH . 
F 6 HOH A 93 1093 129 HOH HOH . 
F 6 HOH A 94 1094 130 HOH HOH . 
F 6 HOH A 95 1095 131 HOH HOH . 
F 6 HOH A 96 1096 132 HOH HOH . 
F 6 HOH A 97 1097 133 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 UPG . . . E 5 84.735 13.58 46.19 0.7 57.98 ? N1 UPG 500 A 1 
HETATM 2 C C2 UPG . . . E 5 84.579 12.578 47.134 0.7 56.95 ? C2 UPG 500 A 1 
HETATM 3 N N3 UPG . . . E 5 83.421 11.83 47.019 0.7 57.57 ? N3 UPG 500 A 1 
HETATM 4 C C4 UPG . . . E 5 82.432 11.977 46.051 0.7 55.31 ? C4 UPG 500 A 1 
HETATM 5 C C5 UPG . . . E 5 82.697 13.04 45.131 0.7 57.16 ? C5 UPG 500 A 1 
HETATM 6 C C6 UPG . . . E 5 83.781 13.782 45.231 0.7 56.37 ? C6 UPG 500 A 1 
HETATM 7 O O2 UPG . . . E 5 85.394 12.363 48.008 0.7 53.01 ? O2 UPG 500 A 1 
HETATM 8 O O4 UPG . . . E 5 81.462 11.24 46.065 0.7 56.82 ? O4 UPG 500 A 1 
HETATM 9 C C1C UPG . . . E 5 85.675 14.631 46.062 0.7 58.71 ? C1C UPG 500 A 1 
HETATM 10 C C2C UPG . . . E 5 86.688 14.176 45.031 0.7 59.99 ? C2C UPG 500 A 1 
HETATM 11 O O2C UPG . . . E 5 87.557 13.146 45.524 0.7 63.2 ? O2C UPG 500 A 1 
HETATM 12 C C3C UPG . . . E 5 87.454 15.48 44.704 0.7 60.09 ? C3C UPG 500 A 1 
HETATM 13 C C4C UPG . . . E 5 86.361 16.511 44.892 0.7 59.76 ? C4C UPG 500 A 1 
HETATM 14 O O4C UPG . . . E 5 85.35 15.931 45.765 0.7 59 ? O4C UPG 500 A 1 
HETATM 15 O O3C UPG . . . E 5 88.528 15.763 45.587 0.7 65.26 ? O3C UPG 500 A 1 
HETATM 16 C C5C UPG . . . E 5 85.689 16.955 43.619 0.7 58.89 ? C5C UPG 500 A 1 
HETATM 17 O O5C UPG . . . E 5 85.216 15.785 42.904 0.7 61.69 ? O5C UPG 500 A 1 
HETATM 18 P PA UPG . . . E 5 84.218 15.959 41.65 0.7 58.66 ? PA UPG 500 A 1 
HETATM 19 O O1A UPG . . . E 5 83.061 16.819 41.928 0.7 62.88 ? O1A UPG 500 A 1 
HETATM 20 O O2A UPG . . . E 5 83.868 14.638 41.103 0.7 61.75 ? O2A UPG 500 A 1 
HETATM 21 O O3A UPG . . . E 5 85.096 16.846 40.591 0.7 62.35 ? O3A UPG 500 A 1 
HETATM 22 P PB UPG . . . E 5 84.412 17.978 39.594 0.7 62.17 ? PB UPG 500 A 1 
HETATM 23 O O1B UPG . . . E 5 82.971 18.412 39.474 0.7 64.57 ? O1B UPG 500 A 1 
HETATM 24 O O2B UPG . . . E 5 85.047 17.911 38.21 0.7 63.76 ? O2B UPG 500 A 1 
HETATM 25 O O3B UPG . . . E 5 85.054 19.079 40.504 0.7 62.06 ? O3B UPG 500 A 1 
HETATM 26 C C1' UPG . . . E 5 85.195 20.469 40.144 0.7 59.98 ? C1' UPG 500 A 1 
HETATM 27 C C2' UPG . . . E 5 86.516 21.024 40.788 0.7 58.77 ? C2' UPG 500 A 1 
HETATM 28 C C3' UPG . . . E 5 86.458 20.684 42.331 0.7 56.73 ? C3' UPG 500 A 1 
HETATM 29 C C4' UPG . . . E 5 85.177 21.269 43.001 0.7 57.91 ? C4' UPG 500 A 1 
HETATM 30 C C5' UPG . . . E 5 83.881 20.945 42.167 0.7 58.02 ? C5' UPG 500 A 1 
HETATM 31 C C6' UPG . . . E 5 82.646 21.804 42.509 0.7 56.94 ? C6' UPG 500 A 1 
HETATM 32 O O2' UPG . . . E 5 87.68 20.367 40.208 0.7 58.57 ? O2' UPG 500 A 1 
HETATM 33 O O3' UPG . . . E 5 87.634 21.193 43.059 0.7 58.09 ? O3' UPG 500 A 1 
HETATM 34 O O4' UPG . . . E 5 85.282 22.7 43.105 0.7 57.7 ? O4' UPG 500 A 1 
HETATM 35 O O5' UPG . . . E 5 84.086 21.15 40.736 0.7 60.45 ? O5' UPG 500 A 1 
HETATM 36 O O6' UPG . . . E 5 81.528 21.375 41.64 0.7 55.51 ? O6' UPG 500 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           214 
_model_server_stats.encode_time_ms          16 
_model_server_stats.element_count           36 
#