data_1G93 # _model_server_result.job_id SRPBNQNeJG2bMk9-i8q69Q _model_server_result.datetime_utc '2024-11-05 23:31:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1g93 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":502}' # _entry.id 1G93 # _exptl.entry_id 1G93 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description beta-D-galactopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1G93 _cell.length_a 95.608 _cell.length_b 95.608 _cell.length_c 110.725 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1G93 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OE1 GLU 259 A GLU 317 1_555 B C1 GAL . A GAL 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? metalc ? metalc1 A OH TYR 81 A TYR 139 1_555 D HG HG . A HG 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.644 ? metalc ? metalc2 A OD2 ASP 169 A ASP 227 1_555 C MN MN . A MN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc3 A OD1 ASP 169 A ASP 227 1_555 C MN MN . A MN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc4 E O2A UPG . A UPG 500 1_555 D HG HG . A HG 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.537 ? metalc ? metalc5 E O3A UPG . A UPG 500 1_555 C MN MN . A MN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.538 ? metalc ? metalc6 D HG HG . A HG 800 1_555 F O HOH . A HOH 1029 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.156 ? metalc ? metalc7 D HG HG . A HG 800 1_555 F O HOH . A HOH 1079 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.346 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id GAL _chem_comp.mon_nstd_flag . _chem_comp.name beta-D-galactopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms beta-D-galactose;D-galactose;galactose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 GAL sing 83 n n C1 O1 GAL sing 84 n n C1 O5 GAL sing 85 n n C1 H1 GAL sing 86 n n C2 C3 GAL sing 87 n n C2 O2 GAL sing 88 n n C2 H2 GAL sing 89 n n C3 C4 GAL sing 90 n n C3 O3 GAL sing 91 n n C3 H3 GAL sing 92 n n C4 C5 GAL sing 93 n n C4 O4 GAL sing 94 n n C4 H4 GAL sing 95 n n C5 C6 GAL sing 96 n n C5 O5 GAL sing 97 n n C5 H5 GAL sing 98 n n C6 O6 GAL sing 99 n n C6 H61 GAL sing 100 n n C6 H62 GAL sing 101 n n O1 HO1 GAL sing 102 n n O2 HO2 GAL sing 103 n n O3 HO3 GAL sing 104 n n O4 HO4 GAL sing 105 n n O6 HO6 GAL sing 106 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version GAL DGalpb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 GAL b-D-galactopyranose 'COMMON NAME' GMML 1 GAL b-D-Galp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 GAL Gal 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1G93 _atom_sites.fract_transf_matrix[1][1] 0.010459 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010459 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009031 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GAL A 1 502 502 GAL GAL . C 3 MN A 1 1000 1000 MN MN . D 4 HG A 1 800 800 HG HG . E 5 UPG A 1 500 500 UPG UPG . F 6 HOH A 1 1001 1 HOH HOH . F 6 HOH A 2 1002 2 HOH HOH . F 6 HOH A 3 1003 3 HOH HOH . F 6 HOH A 4 1004 6 HOH HOH . F 6 HOH A 5 1005 8 HOH HOH . F 6 HOH A 6 1006 9 HOH HOH . F 6 HOH A 7 1007 10 HOH HOH . F 6 HOH A 8 1008 11 HOH HOH . F 6 HOH A 9 1009 12 HOH HOH . F 6 HOH A 10 1010 13 HOH HOH . F 6 HOH A 11 1011 14 HOH HOH . F 6 HOH A 12 1012 15 HOH HOH . F 6 HOH A 13 1013 16 HOH HOH . F 6 HOH A 14 1014 17 HOH HOH . F 6 HOH A 15 1015 18 HOH HOH . F 6 HOH A 16 1016 19 HOH HOH . F 6 HOH A 17 1017 20 HOH HOH . F 6 HOH A 18 1018 21 HOH HOH . F 6 HOH A 19 1019 22 HOH HOH . F 6 HOH A 20 1020 23 HOH HOH . F 6 HOH A 21 1021 24 HOH HOH . F 6 HOH A 22 1022 25 HOH HOH . F 6 HOH A 23 1023 26 HOH HOH . F 6 HOH A 24 1024 27 HOH HOH . F 6 HOH A 25 1025 28 HOH HOH . F 6 HOH A 26 1026 30 HOH HOH . F 6 HOH A 27 1027 32 HOH HOH . F 6 HOH A 28 1028 35 HOH HOH . F 6 HOH A 29 1029 37 HOH HOH . F 6 HOH A 30 1030 38 HOH HOH . F 6 HOH A 31 1031 39 HOH HOH . F 6 HOH A 32 1032 40 HOH HOH . F 6 HOH A 33 1033 41 HOH HOH . F 6 HOH A 34 1034 42 HOH HOH . F 6 HOH A 35 1035 43 HOH HOH . F 6 HOH A 36 1036 44 HOH HOH . F 6 HOH A 37 1037 46 HOH HOH . F 6 HOH A 38 1038 47 HOH HOH . F 6 HOH A 39 1039 49 HOH HOH . F 6 HOH A 40 1040 50 HOH HOH . F 6 HOH A 41 1041 51 HOH HOH . F 6 HOH A 42 1042 52 HOH HOH . F 6 HOH A 43 1043 53 HOH HOH . F 6 HOH A 44 1044 54 HOH HOH . F 6 HOH A 45 1045 56 HOH HOH . F 6 HOH A 46 1046 57 HOH HOH . F 6 HOH A 47 1047 58 HOH HOH . F 6 HOH A 48 1048 59 HOH HOH . F 6 HOH A 49 1049 60 HOH HOH . F 6 HOH A 50 1050 61 HOH HOH . F 6 HOH A 51 1051 62 HOH HOH . F 6 HOH A 52 1052 64 HOH HOH . F 6 HOH A 53 1053 66 HOH HOH . F 6 HOH A 54 1054 67 HOH HOH . F 6 HOH A 55 1055 68 HOH HOH . F 6 HOH A 56 1056 69 HOH HOH . F 6 HOH A 57 1057 70 HOH HOH . F 6 HOH A 58 1058 71 HOH HOH . F 6 HOH A 59 1059 72 HOH HOH . F 6 HOH A 60 1060 73 HOH HOH . F 6 HOH A 61 1061 74 HOH HOH . F 6 HOH A 62 1062 75 HOH HOH . F 6 HOH A 63 1063 76 HOH HOH . F 6 HOH A 64 1064 77 HOH HOH . F 6 HOH A 65 1065 78 HOH HOH . F 6 HOH A 66 1066 79 HOH HOH . F 6 HOH A 67 1067 80 HOH HOH . F 6 HOH A 68 1068 82 HOH HOH . F 6 HOH A 69 1069 83 HOH HOH . F 6 HOH A 70 1070 84 HOH HOH . F 6 HOH A 71 1071 85 HOH HOH . F 6 HOH A 72 1072 86 HOH HOH . F 6 HOH A 73 1073 87 HOH HOH . F 6 HOH A 74 1074 88 HOH HOH . F 6 HOH A 75 1075 89 HOH HOH . F 6 HOH A 76 1076 90 HOH HOH . F 6 HOH A 77 1077 92 HOH HOH . F 6 HOH A 78 1078 93 HOH HOH . F 6 HOH A 79 1079 99 HOH HOH . F 6 HOH A 80 1080 102 HOH HOH . F 6 HOH A 81 1081 103 HOH HOH . F 6 HOH A 82 1082 105 HOH HOH . F 6 HOH A 83 1083 107 HOH HOH . F 6 HOH A 84 1084 110 HOH HOH . F 6 HOH A 85 1085 112 HOH HOH . F 6 HOH A 86 1086 113 HOH HOH . F 6 HOH A 87 1087 114 HOH HOH . F 6 HOH A 88 1088 117 HOH HOH . F 6 HOH A 89 1089 121 HOH HOH . F 6 HOH A 90 1090 126 HOH HOH . F 6 HOH A 91 1091 127 HOH HOH . F 6 HOH A 92 1092 128 HOH HOH . F 6 HOH A 93 1093 129 HOH HOH . F 6 HOH A 94 1094 130 HOH HOH . F 6 HOH A 95 1095 131 HOH HOH . F 6 HOH A 96 1096 132 HOH HOH . F 6 HOH A 97 1097 133 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GAL . . . B 2 84.741 24.273 37.121 1 60.69 ? C1 GAL 502 A 1 HETATM 2 C C2 GAL . . . B 2 84.901 22.763 37.422 1 60.88 ? C2 GAL 502 A 1 HETATM 3 C C3 GAL . . . B 2 84.288 21.789 36.391 1 60.53 ? C3 GAL 502 A 1 HETATM 4 C C4 GAL . . . B 2 82.999 22.31 35.784 1 60.38 ? C4 GAL 502 A 1 HETATM 5 C C5 GAL . . . B 2 83.277 23.718 35.316 1 59.9 ? C5 GAL 502 A 1 HETATM 6 C C6 GAL . . . B 2 82.188 24.346 34.484 1 59.32 ? C6 GAL 502 A 1 HETATM 7 O O2 GAL . . . B 2 86.278 22.468 37.499 1 60.32 ? O2 GAL 502 A 1 HETATM 8 O O3 GAL . . . B 2 84.01 20.559 37.035 1 61.04 ? O3 GAL 502 A 1 HETATM 9 O O4 GAL . . . B 2 81.983 22.305 36.776 1 59.49 ? O4 GAL 502 A 1 HETATM 10 O O5 GAL . . . B 2 83.491 24.543 36.467 1 60.63 ? O5 GAL 502 A 1 HETATM 11 O O6 GAL . . . B 2 82.746 25.146 33.452 1 57.98 ? O6 GAL 502 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 212 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 11 #