data_1G99 # _model_server_result.job_id VVF_KHgqtzEIQ587-6_0sQ _model_server_result.datetime_utc '2024-11-04 18:20:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1g99 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":410}' # _entry.id 1G99 # _exptl.entry_id 1G99 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.9 _cell.angle_gamma 90 _cell.entry_id 1G99 _cell.length_a 181.3 _cell.length_b 67.4 _cell.length_c 82.6 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1G99 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 1G99 _atom_sites.fract_transf_matrix[1][1] 0.005516 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001263 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014837 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01242 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 409 1 SO4 SO4 . D 3 ADP A 1 410 1 ADP ADP . E 2 SO4 B 1 409 2 SO4 SO4 . F 3 ADP B 1 410 2 ADP ADP . G 4 HOH A 1 411 1 HOH WAT . G 4 HOH A 2 412 2 HOH WAT . G 4 HOH A 3 413 3 HOH WAT . G 4 HOH A 4 414 4 HOH WAT . G 4 HOH A 5 415 6 HOH WAT . G 4 HOH A 6 416 7 HOH WAT . G 4 HOH A 7 417 9 HOH WAT . G 4 HOH A 8 418 11 HOH WAT . G 4 HOH A 9 419 12 HOH WAT . G 4 HOH A 10 420 13 HOH WAT . G 4 HOH A 11 421 17 HOH WAT . G 4 HOH A 12 422 18 HOH WAT . G 4 HOH A 13 423 21 HOH WAT . G 4 HOH A 14 424 23 HOH WAT . G 4 HOH A 15 425 24 HOH WAT . G 4 HOH A 16 426 29 HOH WAT . G 4 HOH A 17 427 30 HOH WAT . G 4 HOH A 18 428 31 HOH WAT . G 4 HOH A 19 429 32 HOH WAT . G 4 HOH A 20 430 34 HOH WAT . G 4 HOH A 21 431 35 HOH WAT . G 4 HOH A 22 432 39 HOH WAT . G 4 HOH A 23 433 40 HOH WAT . G 4 HOH A 24 434 41 HOH WAT . G 4 HOH A 25 435 44 HOH WAT . G 4 HOH A 26 436 46 HOH WAT . G 4 HOH A 27 437 48 HOH WAT . G 4 HOH A 28 438 49 HOH WAT . G 4 HOH A 29 439 52 HOH WAT . G 4 HOH A 30 440 53 HOH WAT . G 4 HOH A 31 441 54 HOH WAT . G 4 HOH A 32 442 57 HOH WAT . G 4 HOH A 33 443 58 HOH WAT . G 4 HOH A 34 444 59 HOH WAT . G 4 HOH A 35 445 62 HOH WAT . G 4 HOH A 36 446 63 HOH WAT . G 4 HOH A 37 447 65 HOH WAT . G 4 HOH A 38 448 66 HOH WAT . G 4 HOH A 39 449 67 HOH WAT . G 4 HOH A 40 450 68 HOH WAT . G 4 HOH A 41 451 69 HOH WAT . G 4 HOH A 42 452 70 HOH WAT . G 4 HOH A 43 453 71 HOH WAT . G 4 HOH A 44 454 73 HOH WAT . G 4 HOH A 45 455 74 HOH WAT . G 4 HOH A 46 456 75 HOH WAT . G 4 HOH A 47 457 76 HOH WAT . G 4 HOH A 48 458 77 HOH WAT . G 4 HOH A 49 459 78 HOH WAT . G 4 HOH A 50 460 79 HOH WAT . G 4 HOH A 51 461 81 HOH WAT . G 4 HOH A 52 462 82 HOH WAT . G 4 HOH A 53 463 83 HOH WAT . G 4 HOH A 54 464 84 HOH WAT . G 4 HOH A 55 465 87 HOH WAT . G 4 HOH A 56 466 89 HOH WAT . G 4 HOH A 57 467 90 HOH WAT . G 4 HOH A 58 468 91 HOH WAT . G 4 HOH A 59 469 98 HOH WAT . G 4 HOH A 60 470 101 HOH WAT . G 4 HOH A 61 471 102 HOH WAT . G 4 HOH A 62 472 106 HOH WAT . G 4 HOH A 63 473 107 HOH WAT . G 4 HOH A 64 474 113 HOH WAT . G 4 HOH A 65 475 115 HOH WAT . G 4 HOH A 66 476 116 HOH WAT . G 4 HOH A 67 477 117 HOH WAT . G 4 HOH A 68 478 118 HOH WAT . G 4 HOH A 69 479 121 HOH WAT . G 4 HOH A 70 480 122 HOH WAT . G 4 HOH A 71 481 124 HOH WAT . G 4 HOH A 72 482 126 HOH WAT . G 4 HOH A 73 483 129 HOH WAT . G 4 HOH A 74 484 130 HOH WAT . G 4 HOH A 75 485 131 HOH WAT . G 4 HOH A 76 486 139 HOH WAT . G 4 HOH A 77 487 140 HOH WAT . G 4 HOH A 78 488 146 HOH WAT . G 4 HOH A 79 489 147 HOH WAT . G 4 HOH A 80 490 149 HOH WAT . G 4 HOH A 81 491 154 HOH WAT . G 4 HOH A 82 492 155 HOH WAT . G 4 HOH A 83 493 156 HOH WAT . G 4 HOH A 84 494 160 HOH WAT . G 4 HOH A 85 495 161 HOH WAT . H 4 HOH B 1 411 5 HOH WAT . H 4 HOH B 2 412 8 HOH WAT . H 4 HOH B 3 413 10 HOH WAT . H 4 HOH B 4 414 14 HOH WAT . H 4 HOH B 5 415 15 HOH WAT . H 4 HOH B 6 416 16 HOH WAT . H 4 HOH B 7 417 19 HOH WAT . H 4 HOH B 8 418 20 HOH WAT . H 4 HOH B 9 419 22 HOH WAT . H 4 HOH B 10 420 25 HOH WAT . H 4 HOH B 11 421 26 HOH WAT . H 4 HOH B 12 422 27 HOH WAT . H 4 HOH B 13 423 28 HOH WAT . H 4 HOH B 14 424 33 HOH WAT . H 4 HOH B 15 425 37 HOH WAT . H 4 HOH B 16 426 38 HOH WAT . H 4 HOH B 17 427 42 HOH WAT . H 4 HOH B 18 428 43 HOH WAT . H 4 HOH B 19 429 45 HOH WAT . H 4 HOH B 20 430 47 HOH WAT . H 4 HOH B 21 431 50 HOH WAT . H 4 HOH B 22 432 51 HOH WAT . H 4 HOH B 23 433 55 HOH WAT . H 4 HOH B 24 434 56 HOH WAT . H 4 HOH B 25 435 60 HOH WAT . H 4 HOH B 26 436 61 HOH WAT . H 4 HOH B 27 437 64 HOH WAT . H 4 HOH B 28 438 72 HOH WAT . H 4 HOH B 29 439 80 HOH WAT . H 4 HOH B 30 440 85 HOH WAT . H 4 HOH B 31 441 86 HOH WAT . H 4 HOH B 32 442 92 HOH WAT . H 4 HOH B 33 443 93 HOH WAT . H 4 HOH B 34 444 94 HOH WAT . H 4 HOH B 35 445 95 HOH WAT . H 4 HOH B 36 446 96 HOH WAT . H 4 HOH B 37 447 97 HOH WAT . H 4 HOH B 38 448 99 HOH WAT . H 4 HOH B 39 449 100 HOH WAT . H 4 HOH B 40 450 103 HOH WAT . H 4 HOH B 41 451 104 HOH WAT . H 4 HOH B 42 452 105 HOH WAT . H 4 HOH B 43 453 108 HOH WAT . H 4 HOH B 44 454 109 HOH WAT . H 4 HOH B 45 455 110 HOH WAT . H 4 HOH B 46 456 111 HOH WAT . H 4 HOH B 47 457 112 HOH WAT . H 4 HOH B 48 458 114 HOH WAT . H 4 HOH B 49 459 119 HOH WAT . H 4 HOH B 50 460 120 HOH WAT . H 4 HOH B 51 461 123 HOH WAT . H 4 HOH B 52 462 125 HOH WAT . H 4 HOH B 53 463 127 HOH WAT . H 4 HOH B 54 464 128 HOH WAT . H 4 HOH B 55 465 132 HOH WAT . H 4 HOH B 56 466 133 HOH WAT . H 4 HOH B 57 467 134 HOH WAT . H 4 HOH B 58 468 136 HOH WAT . H 4 HOH B 59 469 137 HOH WAT . H 4 HOH B 60 470 138 HOH WAT . H 4 HOH B 61 471 141 HOH WAT . H 4 HOH B 62 472 142 HOH WAT . H 4 HOH B 63 473 143 HOH WAT . H 4 HOH B 64 474 144 HOH WAT . H 4 HOH B 65 475 145 HOH WAT . H 4 HOH B 66 476 148 HOH WAT . H 4 HOH B 67 477 151 HOH WAT . H 4 HOH B 68 478 152 HOH WAT . H 4 HOH B 69 479 153 HOH WAT . H 4 HOH B 70 480 157 HOH WAT . H 4 HOH B 71 481 158 HOH WAT . H 4 HOH B 72 482 159 HOH WAT . H 4 HOH B 73 483 162 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . D 3 42.025 44.444 64.079 1 80.13 ? PB ADP 410 A 1 HETATM 2 O O1B ADP . . . D 3 42.989 44.201 62.944 1 79.39 ? O1B ADP 410 A 1 HETATM 3 O O2B ADP . . . D 3 41.642 43.091 64.925 1 83.08 ? O2B ADP 410 A 1 HETATM 4 O O3B ADP . . . D 3 42.582 45.465 65.039 1 78.84 ? O3B ADP 410 A 1 HETATM 5 P PA ADP . . . D 3 39.21 45.407 63.891 1 61.87 ? PA ADP 410 A 1 HETATM 6 O O1A ADP . . . D 3 38.743 44.605 65.031 1 55.41 ? O1A ADP 410 A 1 HETATM 7 O O2A ADP . . . D 3 38.26 45.318 62.767 1 67.43 ? O2A ADP 410 A 1 HETATM 8 O O3A ADP . . . D 3 40.65 44.878 63.414 1 76.1 ? O3A ADP 410 A 1 HETATM 9 O O5' ADP . . . D 3 39.466 46.958 64.221 1 65.57 ? O5' ADP 410 A 1 HETATM 10 C C5' ADP . . . D 3 40.341 47.432 65.255 1 58.47 ? C5' ADP 410 A 1 HETATM 11 C C4' ADP . . . D 3 39.637 48.639 65.861 1 58.16 ? C4' ADP 410 A 1 HETATM 12 O O4' ADP . . . D 3 39.583 48.438 67.287 1 56.02 ? O4' ADP 410 A 1 HETATM 13 C C3' ADP . . . D 3 40.359 49.975 65.628 1 58.59 ? C3' ADP 410 A 1 HETATM 14 O O3' ADP . . . D 3 39.472 51.088 65.367 1 52.15 ? O3' ADP 410 A 1 HETATM 15 C C2' ADP . . . D 3 41.096 50.22 66.922 1 56.49 ? C2' ADP 410 A 1 HETATM 16 O O2' ADP . . . D 3 41.377 51.597 67.184 1 60.73 ? O2' ADP 410 A 1 HETATM 17 C C1' ADP . . . D 3 40.182 49.553 67.939 1 55.72 ? C1' ADP 410 A 1 HETATM 18 N N9 ADP . . . D 3 40.934 49.135 69.167 1 54.08 ? N9 ADP 410 A 1 HETATM 19 C C8 ADP . . . D 3 41.881 48.176 69.25 1 54.66 ? C8 ADP 410 A 1 HETATM 20 N N7 ADP . . . D 3 42.327 48.113 70.509 1 51.28 ? N7 ADP 410 A 1 HETATM 21 C C5 ADP . . . D 3 41.681 49.012 71.22 1 53.83 ? C5 ADP 410 A 1 HETATM 22 C C6 ADP . . . D 3 41.691 49.44 72.554 1 53.93 ? C6 ADP 410 A 1 HETATM 23 N N6 ADP . . . D 3 42.529 48.878 73.443 1 58.65 ? N6 ADP 410 A 1 HETATM 24 N N1 ADP . . . D 3 40.842 50.445 72.957 1 53.38 ? N1 ADP 410 A 1 HETATM 25 C C2 ADP . . . D 3 39.977 51.051 72.103 1 51.74 ? C2 ADP 410 A 1 HETATM 26 N N3 ADP . . . D 3 39.964 50.65 70.822 1 47.83 ? N3 ADP 410 A 1 HETATM 27 C C4 ADP . . . D 3 40.777 49.663 70.349 1 52.83 ? C4 ADP 410 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #