data_1G9S # _model_server_result.job_id H-M8dMAHop5W6XTkWmtQTw _model_server_result.datetime_utc '2024-12-26 15:55:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1g9s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":190}' # _entry.id 1G9S # _exptl.entry_id 1G9S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 348.206 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'INOSINIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1G9S _cell.length_a 84.14 _cell.length_b 84.14 _cell.length_c 167.27 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1G9S _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_675 x-y+1,-y+2,-z+2/3 1 0 0 0 -1 0 0 0 -1 0 145.734755 111.513333 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H13 N4 O8 P' _chem_comp.formula_weight 348.206 _chem_comp.id IMP _chem_comp.mon_nstd_flag n _chem_comp.name 'INOSINIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P IMP doub 173 n n P O2P IMP sing 174 n n P O3P IMP sing 175 n n P O5' IMP sing 176 n n O2P HOP2 IMP sing 177 n n O3P HOP3 IMP sing 178 n n O5' C5' IMP sing 179 n n C5' C4' IMP sing 180 n n C5' "H5'1" IMP sing 181 n n C5' "H5'2" IMP sing 182 n n C4' O4' IMP sing 183 n n C4' C3' IMP sing 184 n n C4' H4' IMP sing 185 n n O4' C1' IMP sing 186 n n C3' O3' IMP sing 187 n n C3' C2' IMP sing 188 n n C3' H3' IMP sing 189 n n O3' HO3' IMP sing 190 n n C2' O2' IMP sing 191 n n C2' C1' IMP sing 192 n n C2' H2' IMP sing 193 n n O2' HO2' IMP sing 194 n n C1' N9 IMP sing 195 n n C1' H1' IMP sing 196 n n N9 C8 IMP sing 197 n y N9 C4 IMP sing 198 n y C8 N7 IMP doub 199 n y C8 H8 IMP sing 200 n n N7 C5 IMP sing 201 n y C5 C6 IMP sing 202 n n C5 C4 IMP doub 203 n y C6 O6 IMP doub 204 n n C6 N1 IMP sing 205 n n N1 C2 IMP sing 206 n n N1 HN1 IMP sing 207 n n C2 N3 IMP doub 208 n n C2 H2 IMP sing 209 n n N3 C4 IMP sing 210 n n # _atom_sites.entry_id 1G9S _atom_sites.fract_transf_matrix[1][1] 0.011885 _atom_sites.fract_transf_matrix[1][2] 0.006862 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013724 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005978 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 IMP A 1 190 190 IMP IMP . D 3 N B 1 490 490 N RIB . E 4 HOH A 1 1001 1001 HOH TIP . E 4 HOH A 2 1004 1004 HOH TIP . E 4 HOH A 3 1006 1006 HOH TIP . E 4 HOH A 4 1007 1007 HOH TIP . E 4 HOH A 5 1011 1011 HOH TIP . E 4 HOH A 6 1012 1012 HOH TIP . E 4 HOH A 7 1013 1013 HOH TIP . E 4 HOH A 8 1015 1015 HOH TIP . E 4 HOH A 9 1017 1017 HOH TIP . E 4 HOH A 10 1018 1018 HOH TIP . E 4 HOH A 11 1019 1019 HOH TIP . E 4 HOH A 12 1020 1020 HOH TIP . E 4 HOH A 13 1022 1022 HOH TIP . E 4 HOH A 14 1023 1023 HOH TIP . E 4 HOH A 15 1026 1026 HOH TIP . E 4 HOH A 16 1027 1027 HOH TIP . E 4 HOH A 17 1029 1029 HOH TIP . E 4 HOH A 18 1032 1032 HOH TIP . E 4 HOH A 19 1033 1033 HOH TIP . E 4 HOH A 20 1034 1034 HOH TIP . E 4 HOH A 21 1035 1035 HOH TIP . E 4 HOH A 22 1039 1039 HOH TIP . E 4 HOH A 23 1040 1040 HOH TIP . E 4 HOH A 24 1045 1045 HOH TIP . E 4 HOH A 25 1049 1049 HOH TIP . E 4 HOH A 26 1050 1050 HOH TIP . E 4 HOH A 27 1051 1051 HOH TIP . E 4 HOH A 28 1052 1052 HOH TIP . E 4 HOH A 29 1054 1054 HOH TIP . E 4 HOH A 30 1056 1056 HOH TIP . E 4 HOH A 31 1057 1057 HOH TIP . E 4 HOH A 32 1058 1058 HOH TIP . E 4 HOH A 33 1061 1061 HOH TIP . E 4 HOH A 34 1063 1063 HOH TIP . E 4 HOH A 35 1065 1065 HOH TIP . E 4 HOH A 36 1070 1070 HOH TIP . E 4 HOH A 37 1072 1072 HOH TIP . E 4 HOH A 38 1073 1073 HOH TIP . E 4 HOH A 39 1074 1074 HOH TIP . E 4 HOH A 40 1078 1078 HOH TIP . E 4 HOH A 41 1079 1079 HOH TIP . E 4 HOH A 42 1080 1080 HOH TIP . E 4 HOH A 43 1081 1081 HOH TIP . E 4 HOH A 44 1083 1083 HOH TIP . E 4 HOH A 45 1084 1084 HOH TIP . E 4 HOH A 46 1085 1085 HOH TIP . E 4 HOH A 47 1087 1087 HOH TIP . E 4 HOH A 48 1088 1088 HOH TIP . E 4 HOH A 49 1089 1089 HOH TIP . E 4 HOH A 50 1090 1090 HOH TIP . E 4 HOH A 51 1094 1094 HOH TIP . E 4 HOH A 52 1096 1096 HOH TIP . F 4 HOH B 1 1002 1002 HOH TIP . F 4 HOH B 2 1003 1003 HOH TIP . F 4 HOH B 3 1005 1005 HOH TIP . F 4 HOH B 4 1008 1008 HOH TIP . F 4 HOH B 5 1009 1009 HOH TIP . F 4 HOH B 6 1010 1010 HOH TIP . F 4 HOH B 7 1014 1014 HOH TIP . F 4 HOH B 8 1016 1016 HOH TIP . F 4 HOH B 9 1021 1021 HOH TIP . F 4 HOH B 10 1024 1024 HOH TIP . F 4 HOH B 11 1025 1025 HOH TIP . F 4 HOH B 12 1028 1028 HOH TIP . F 4 HOH B 13 1030 1030 HOH TIP . F 4 HOH B 14 1031 1031 HOH TIP . F 4 HOH B 15 1036 1036 HOH TIP . F 4 HOH B 16 1037 1037 HOH TIP . F 4 HOH B 17 1038 1038 HOH TIP . F 4 HOH B 18 1041 1041 HOH TIP . F 4 HOH B 19 1042 1042 HOH TIP . F 4 HOH B 20 1043 1043 HOH TIP . F 4 HOH B 21 1044 1044 HOH TIP . F 4 HOH B 22 1046 1046 HOH TIP . F 4 HOH B 23 1047 1047 HOH TIP . F 4 HOH B 24 1048 1048 HOH TIP . F 4 HOH B 25 1053 1053 HOH TIP . F 4 HOH B 26 1055 1055 HOH TIP . F 4 HOH B 27 1059 1059 HOH TIP . F 4 HOH B 28 1060 1060 HOH TIP . F 4 HOH B 29 1062 1062 HOH TIP . F 4 HOH B 30 1064 1064 HOH TIP . F 4 HOH B 31 1066 1066 HOH TIP . F 4 HOH B 32 1067 1067 HOH TIP . F 4 HOH B 33 1068 1068 HOH TIP . F 4 HOH B 34 1069 1069 HOH TIP . F 4 HOH B 35 1071 1071 HOH TIP . F 4 HOH B 36 1075 1075 HOH TIP . F 4 HOH B 37 1076 1076 HOH TIP . F 4 HOH B 38 1077 1077 HOH TIP . F 4 HOH B 39 1082 1082 HOH TIP . F 4 HOH B 40 1086 1086 HOH TIP . F 4 HOH B 41 1091 1091 HOH TIP . F 4 HOH B 42 1092 1092 HOH TIP . F 4 HOH B 43 1093 1093 HOH TIP . F 4 HOH B 44 1095 1095 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P IMP . . . C 2 -12.513 60.012 68.346 1 58.72 ? P IMP 190 A 1 HETATM 2 O O1P IMP . . . C 2 -13.172 59.286 69.448 1 58.51 ? O1P IMP 190 A 1 HETATM 3 O O2P IMP . . . C 2 -11.057 59.92 68.415 1 57.97 ? O2P IMP 190 A 1 HETATM 4 O O3P IMP . . . C 2 -13.083 59.621 67.051 1 60.68 ? O3P IMP 190 A 1 HETATM 5 O O5' IMP . . . C 2 -13.016 61.512 68.438 1 64.35 ? O5' IMP 190 A 1 HETATM 6 C C5' IMP . . . C 2 -12.497 62.532 69.308 1 71.13 ? C5' IMP 190 A 1 HETATM 7 C C4' IMP . . . C 2 -12.821 63.895 68.774 1 75.43 ? C4' IMP 190 A 1 HETATM 8 O O4' IMP . . . C 2 -14.244 64.163 68.712 1 78.79 ? O4' IMP 190 A 1 HETATM 9 C C3' IMP . . . C 2 -12.266 64.939 69.684 1 77.28 ? C3' IMP 190 A 1 HETATM 10 O O3' IMP . . . C 2 -10.965 65.327 69.235 1 77.81 ? O3' IMP 190 A 1 HETATM 11 C C2' IMP . . . C 2 -13.215 66.074 69.56 1 78.98 ? C2' IMP 190 A 1 HETATM 12 O O2' IMP . . . C 2 -12.761 67.015 68.601 1 78.18 ? O2' IMP 190 A 1 HETATM 13 C C1' IMP . . . C 2 -14.584 65.496 69.17 1 82.18 ? C1' IMP 190 A 1 HETATM 14 N N9 IMP . . . C 2 -15.528 65.461 70.399 1 87.65 ? N9 IMP 190 A 1 HETATM 15 C C8 IMP . . . C 2 -15.795 64.363 71.231 1 89.4 ? C8 IMP 190 A 1 HETATM 16 N N7 IMP . . . C 2 -16.641 64.6 72.221 1 90.03 ? N7 IMP 190 A 1 HETATM 17 C C5 IMP . . . C 2 -16.987 65.949 72.082 1 90.26 ? C5 IMP 190 A 1 HETATM 18 C C6 IMP . . . C 2 -17.882 66.772 72.883 1 89.68 ? C6 IMP 190 A 1 HETATM 19 O O6 IMP . . . C 2 -18.523 66.429 73.878 1 88.1 ? O6 IMP 190 A 1 HETATM 20 N N1 IMP . . . C 2 -17.977 68.104 72.425 1 89.92 ? N1 IMP 190 A 1 HETATM 21 C C2 IMP . . . C 2 -17.292 68.618 71.302 1 90.51 ? C2 IMP 190 A 1 HETATM 22 N N3 IMP . . . C 2 -16.443 67.845 70.536 1 90.75 ? N3 IMP 190 A 1 HETATM 23 C C4 IMP . . . C 2 -16.324 66.512 70.971 1 89.83 ? C4 IMP 190 A 1 # _model_server_stats.io_time_ms 35 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 23 #