data_1G9S # _model_server_result.job_id EywS-1vhYsEF2MNiSNuHrg _model_server_result.datetime_utc '2024-12-26 16:18:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1g9s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":490}' # _entry.id 1G9S # _exptl.entry_id 1G9S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 214.11 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ANY 5'-MONOPHOSPHATE NUCLEOTIDE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1G9S _cell.length_a 84.14 _cell.length_b 84.14 _cell.length_c 167.27 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1G9S _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_675 x-y+1,-y+2,-z+2/3 1 0 0 0 -1 0 0 0 -1 0 145.734755 111.513333 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H11 O7 P' _chem_comp.formula_weight 214.11 _chem_comp.id N _chem_comp.mon_nstd_flag . _chem_comp.name "ANY 5'-MONOPHOSPHATE NUCLEOTIDE" _chem_comp.type 'rna linking' _chem_comp.pdbx_synonyms "1-DEOXY-RIBOFURANOSE-5'-PHOSPHATE" # _atom_sites.entry_id 1G9S _atom_sites.fract_transf_matrix[1][1] 0.011885 _atom_sites.fract_transf_matrix[1][2] 0.006862 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013724 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005978 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 IMP A 1 190 190 IMP IMP . D 3 N B 1 490 490 N RIB . E 4 HOH A 1 1001 1001 HOH TIP . E 4 HOH A 2 1004 1004 HOH TIP . E 4 HOH A 3 1006 1006 HOH TIP . E 4 HOH A 4 1007 1007 HOH TIP . E 4 HOH A 5 1011 1011 HOH TIP . E 4 HOH A 6 1012 1012 HOH TIP . E 4 HOH A 7 1013 1013 HOH TIP . E 4 HOH A 8 1015 1015 HOH TIP . E 4 HOH A 9 1017 1017 HOH TIP . E 4 HOH A 10 1018 1018 HOH TIP . E 4 HOH A 11 1019 1019 HOH TIP . E 4 HOH A 12 1020 1020 HOH TIP . E 4 HOH A 13 1022 1022 HOH TIP . E 4 HOH A 14 1023 1023 HOH TIP . E 4 HOH A 15 1026 1026 HOH TIP . E 4 HOH A 16 1027 1027 HOH TIP . E 4 HOH A 17 1029 1029 HOH TIP . E 4 HOH A 18 1032 1032 HOH TIP . E 4 HOH A 19 1033 1033 HOH TIP . E 4 HOH A 20 1034 1034 HOH TIP . E 4 HOH A 21 1035 1035 HOH TIP . E 4 HOH A 22 1039 1039 HOH TIP . E 4 HOH A 23 1040 1040 HOH TIP . E 4 HOH A 24 1045 1045 HOH TIP . E 4 HOH A 25 1049 1049 HOH TIP . E 4 HOH A 26 1050 1050 HOH TIP . E 4 HOH A 27 1051 1051 HOH TIP . E 4 HOH A 28 1052 1052 HOH TIP . E 4 HOH A 29 1054 1054 HOH TIP . E 4 HOH A 30 1056 1056 HOH TIP . E 4 HOH A 31 1057 1057 HOH TIP . E 4 HOH A 32 1058 1058 HOH TIP . E 4 HOH A 33 1061 1061 HOH TIP . E 4 HOH A 34 1063 1063 HOH TIP . E 4 HOH A 35 1065 1065 HOH TIP . E 4 HOH A 36 1070 1070 HOH TIP . E 4 HOH A 37 1072 1072 HOH TIP . E 4 HOH A 38 1073 1073 HOH TIP . E 4 HOH A 39 1074 1074 HOH TIP . E 4 HOH A 40 1078 1078 HOH TIP . E 4 HOH A 41 1079 1079 HOH TIP . E 4 HOH A 42 1080 1080 HOH TIP . E 4 HOH A 43 1081 1081 HOH TIP . E 4 HOH A 44 1083 1083 HOH TIP . E 4 HOH A 45 1084 1084 HOH TIP . E 4 HOH A 46 1085 1085 HOH TIP . E 4 HOH A 47 1087 1087 HOH TIP . E 4 HOH A 48 1088 1088 HOH TIP . E 4 HOH A 49 1089 1089 HOH TIP . E 4 HOH A 50 1090 1090 HOH TIP . E 4 HOH A 51 1094 1094 HOH TIP . E 4 HOH A 52 1096 1096 HOH TIP . F 4 HOH B 1 1002 1002 HOH TIP . F 4 HOH B 2 1003 1003 HOH TIP . F 4 HOH B 3 1005 1005 HOH TIP . F 4 HOH B 4 1008 1008 HOH TIP . F 4 HOH B 5 1009 1009 HOH TIP . F 4 HOH B 6 1010 1010 HOH TIP . F 4 HOH B 7 1014 1014 HOH TIP . F 4 HOH B 8 1016 1016 HOH TIP . F 4 HOH B 9 1021 1021 HOH TIP . F 4 HOH B 10 1024 1024 HOH TIP . F 4 HOH B 11 1025 1025 HOH TIP . F 4 HOH B 12 1028 1028 HOH TIP . F 4 HOH B 13 1030 1030 HOH TIP . F 4 HOH B 14 1031 1031 HOH TIP . F 4 HOH B 15 1036 1036 HOH TIP . F 4 HOH B 16 1037 1037 HOH TIP . F 4 HOH B 17 1038 1038 HOH TIP . F 4 HOH B 18 1041 1041 HOH TIP . F 4 HOH B 19 1042 1042 HOH TIP . F 4 HOH B 20 1043 1043 HOH TIP . F 4 HOH B 21 1044 1044 HOH TIP . F 4 HOH B 22 1046 1046 HOH TIP . F 4 HOH B 23 1047 1047 HOH TIP . F 4 HOH B 24 1048 1048 HOH TIP . F 4 HOH B 25 1053 1053 HOH TIP . F 4 HOH B 26 1055 1055 HOH TIP . F 4 HOH B 27 1059 1059 HOH TIP . F 4 HOH B 28 1060 1060 HOH TIP . F 4 HOH B 29 1062 1062 HOH TIP . F 4 HOH B 30 1064 1064 HOH TIP . F 4 HOH B 31 1066 1066 HOH TIP . F 4 HOH B 32 1067 1067 HOH TIP . F 4 HOH B 33 1068 1068 HOH TIP . F 4 HOH B 34 1069 1069 HOH TIP . F 4 HOH B 35 1071 1071 HOH TIP . F 4 HOH B 36 1075 1075 HOH TIP . F 4 HOH B 37 1076 1076 HOH TIP . F 4 HOH B 38 1077 1077 HOH TIP . F 4 HOH B 39 1082 1082 HOH TIP . F 4 HOH B 40 1086 1086 HOH TIP . F 4 HOH B 41 1091 1091 HOH TIP . F 4 HOH B 42 1092 1092 HOH TIP . F 4 HOH B 43 1093 1093 HOH TIP . F 4 HOH B 44 1095 1095 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OP3 N . . . D 3 10.769 87.727 67.509 1 61.25 ? OP3 N 490 B 1 HETATM 2 P P N . . . D 3 10.02 86.947 66.513 1 61.56 ? P N 490 B 1 HETATM 3 O OP1 N . . . D 3 8.568 87.231 66.595 1 62.33 ? OP1 N 490 B 1 HETATM 4 O OP2 N . . . D 3 10.532 87.048 65.145 1 62.07 ? OP2 N 490 B 1 HETATM 5 O O5' N . . . D 3 10.234 85.498 67.084 1 65.44 ? O5' N 490 B 1 HETATM 6 C C5' N . . . D 3 9.22 84.564 67.464 1 68.8 ? C5' N 490 B 1 HETATM 7 C C4' N . . . D 3 9.717 83.187 67.192 1 71.13 ? C4' N 490 B 1 HETATM 8 O O4' N . . . D 3 10.908 82.878 67.934 1 71.56 ? O4' N 490 B 1 HETATM 9 C C3' N . . . D 3 8.673 82.186 67.573 1 72.25 ? C3' N 490 B 1 HETATM 10 O O3' N . . . D 3 8.216 81.521 66.383 1 72.31 ? O3' N 490 B 1 HETATM 11 C C2' N . . . D 3 9.342 81.241 68.526 1 71.52 ? C2' N 490 B 1 HETATM 12 O O2' N . . . D 3 9.328 79.906 68.027 1 70.3 ? O2' N 490 B 1 HETATM 13 C C1' N . . . D 3 10.78 81.722 68.764 1 72.1 ? C1' N 490 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 13 #