data_1G9T # _model_server_result.job_id zhwt5DlqEPCmuvDnEl4zrw _model_server_result.datetime_utc '2024-12-27 06:40:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1g9t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":190}' # _entry.id 1G9T # _exptl.entry_id 1G9T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 363.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1G9T _cell.length_a 84.14 _cell.length_b 84.14 _cell.length_c 167.27 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1G9T _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_675 x-y+1,-y+2,-z+2/3 1 0 0 0 -1 0 0 0 -1 0 145.734755 111.513333 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H14 N5 O8 P' _chem_comp.formula_weight 363.221 _chem_comp.id 5GP _chem_comp.mon_nstd_flag . _chem_comp.name "GUANOSINE-5'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P 5GP doub 1 n n P O2P 5GP sing 2 n n P O3P 5GP sing 3 n n P O5' 5GP sing 4 n n O2P HOP2 5GP sing 5 n n O3P HOP3 5GP sing 6 n n O5' C5' 5GP sing 7 n n C5' C4' 5GP sing 8 n n C5' "H5'1" 5GP sing 9 n n C5' "H5'2" 5GP sing 10 n n C4' O4' 5GP sing 11 n n C4' C3' 5GP sing 12 n n C4' H4' 5GP sing 13 n n O4' C1' 5GP sing 14 n n C3' O3' 5GP sing 15 n n C3' C2' 5GP sing 16 n n C3' H3' 5GP sing 17 n n O3' HO3' 5GP sing 18 n n C2' O2' 5GP sing 19 n n C2' C1' 5GP sing 20 n n C2' H2' 5GP sing 21 n n O2' HO2' 5GP sing 22 n n C1' N9 5GP sing 23 n n C1' H1' 5GP sing 24 n n N9 C8 5GP sing 25 n y N9 C4 5GP sing 26 n y C8 N7 5GP doub 27 n y C8 H8 5GP sing 28 n n N7 C5 5GP sing 29 n y C5 C6 5GP sing 30 n n C5 C4 5GP doub 31 n y C6 O6 5GP doub 32 n n C6 N1 5GP sing 33 n n N1 C2 5GP sing 34 n n N1 HN1 5GP sing 35 n n C2 N2 5GP sing 36 n n C2 N3 5GP doub 37 n n N2 HN21 5GP sing 38 n n N2 HN22 5GP sing 39 n n N3 C4 5GP sing 40 n n # _atom_sites.entry_id 1G9T _atom_sites.fract_transf_matrix[1][1] 0.011885 _atom_sites.fract_transf_matrix[1][2] 0.006862 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013724 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005978 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 5GP A 1 190 190 5GP GMP . D 3 N B 1 490 490 N RIB . E 4 HOH A 1 1001 1001 HOH TIP . E 4 HOH A 2 1004 1004 HOH TIP . E 4 HOH A 3 1006 1006 HOH TIP . E 4 HOH A 4 1007 1007 HOH TIP . E 4 HOH A 5 1011 1011 HOH TIP . E 4 HOH A 6 1012 1012 HOH TIP . E 4 HOH A 7 1015 1015 HOH TIP . E 4 HOH A 8 1017 1017 HOH TIP . E 4 HOH A 9 1018 1018 HOH TIP . E 4 HOH A 10 1019 1019 HOH TIP . E 4 HOH A 11 1020 1020 HOH TIP . E 4 HOH A 12 1022 1022 HOH TIP . E 4 HOH A 13 1023 1023 HOH TIP . E 4 HOH A 14 1024 1024 HOH TIP . E 4 HOH A 15 1027 1027 HOH TIP . E 4 HOH A 16 1028 1028 HOH TIP . E 4 HOH A 17 1030 1030 HOH TIP . E 4 HOH A 18 1033 1033 HOH TIP . E 4 HOH A 19 1034 1034 HOH TIP . E 4 HOH A 20 1035 1035 HOH TIP . E 4 HOH A 21 1036 1036 HOH TIP . E 4 HOH A 22 1040 1040 HOH TIP . E 4 HOH A 23 1041 1041 HOH TIP . E 4 HOH A 24 1046 1046 HOH TIP . E 4 HOH A 25 1050 1050 HOH TIP . E 4 HOH A 26 1051 1051 HOH TIP . E 4 HOH A 27 1054 1054 HOH TIP . E 4 HOH A 28 1056 1056 HOH TIP . E 4 HOH A 29 1059 1059 HOH TIP . E 4 HOH A 30 1061 1061 HOH TIP . E 4 HOH A 31 1063 1063 HOH TIP . E 4 HOH A 32 1069 1069 HOH TIP . E 4 HOH A 33 1070 1070 HOH TIP . E 4 HOH A 34 1071 1071 HOH TIP . E 4 HOH A 35 1072 1072 HOH TIP . E 4 HOH A 36 1073 1073 HOH TIP . E 4 HOH A 37 1074 1074 HOH TIP . E 4 HOH A 38 1075 1075 HOH TIP . E 4 HOH A 39 1079 1079 HOH TIP . E 4 HOH A 40 1081 1081 HOH TIP . E 4 HOH A 41 1084 1084 HOH TIP . E 4 HOH A 42 1086 1086 HOH TIP . E 4 HOH A 43 1089 1089 HOH TIP . E 4 HOH A 44 1090 1090 HOH TIP . E 4 HOH A 45 1091 1091 HOH TIP . E 4 HOH A 46 1093 1093 HOH TIP . E 4 HOH A 47 1095 1095 HOH TIP . E 4 HOH A 48 1098 1098 HOH TIP . E 4 HOH A 49 1100 1100 HOH TIP . E 4 HOH A 50 1103 1103 HOH TIP . E 4 HOH A 51 1104 1104 HOH TIP . E 4 HOH A 52 1105 1105 HOH TIP . E 4 HOH A 53 1109 1109 HOH TIP . E 4 HOH A 54 1110 1110 HOH TIP . E 4 HOH A 55 1112 1112 HOH TIP . E 4 HOH A 56 1113 1113 HOH TIP . E 4 HOH A 57 1114 1114 HOH TIP . F 4 HOH B 1 1002 1002 HOH TIP . F 4 HOH B 2 1003 1003 HOH TIP . F 4 HOH B 3 1005 1005 HOH TIP . F 4 HOH B 4 1008 1008 HOH TIP . F 4 HOH B 5 1009 1009 HOH TIP . F 4 HOH B 6 1010 1010 HOH TIP . F 4 HOH B 7 1013 1013 HOH TIP . F 4 HOH B 8 1014 1014 HOH TIP . F 4 HOH B 9 1016 1016 HOH TIP . F 4 HOH B 10 1021 1021 HOH TIP . F 4 HOH B 11 1025 1025 HOH TIP . F 4 HOH B 12 1026 1026 HOH TIP . F 4 HOH B 13 1029 1029 HOH TIP . F 4 HOH B 14 1031 1031 HOH TIP . F 4 HOH B 15 1032 1032 HOH TIP . F 4 HOH B 16 1037 1037 HOH TIP . F 4 HOH B 17 1038 1038 HOH TIP . F 4 HOH B 18 1039 1039 HOH TIP . F 4 HOH B 19 1042 1042 HOH TIP . F 4 HOH B 20 1043 1043 HOH TIP . F 4 HOH B 21 1044 1044 HOH TIP . F 4 HOH B 22 1045 1045 HOH TIP . F 4 HOH B 23 1047 1047 HOH TIP . F 4 HOH B 24 1048 1048 HOH TIP . F 4 HOH B 25 1049 1049 HOH TIP . F 4 HOH B 26 1052 1052 HOH TIP . F 4 HOH B 27 1053 1053 HOH TIP . F 4 HOH B 28 1055 1055 HOH TIP . F 4 HOH B 29 1057 1057 HOH TIP . F 4 HOH B 30 1058 1058 HOH TIP . F 4 HOH B 31 1060 1060 HOH TIP . F 4 HOH B 32 1062 1062 HOH TIP . F 4 HOH B 33 1064 1064 HOH TIP . F 4 HOH B 34 1065 1065 HOH TIP . F 4 HOH B 35 1066 1066 HOH TIP . F 4 HOH B 36 1067 1067 HOH TIP . F 4 HOH B 37 1068 1068 HOH TIP . F 4 HOH B 38 1076 1076 HOH TIP . F 4 HOH B 39 1077 1077 HOH TIP . F 4 HOH B 40 1078 1078 HOH TIP . F 4 HOH B 41 1080 1080 HOH TIP . F 4 HOH B 42 1082 1082 HOH TIP . F 4 HOH B 43 1083 1083 HOH TIP . F 4 HOH B 44 1085 1085 HOH TIP . F 4 HOH B 45 1087 1087 HOH TIP . F 4 HOH B 46 1088 1088 HOH TIP . F 4 HOH B 47 1092 1092 HOH TIP . F 4 HOH B 48 1094 1094 HOH TIP . F 4 HOH B 49 1096 1096 HOH TIP . F 4 HOH B 50 1097 1097 HOH TIP . F 4 HOH B 51 1099 1099 HOH TIP . F 4 HOH B 52 1101 1101 HOH TIP . F 4 HOH B 53 1102 1102 HOH TIP . F 4 HOH B 54 1106 1106 HOH TIP . F 4 HOH B 55 1107 1107 HOH TIP . F 4 HOH B 56 1108 1108 HOH TIP . F 4 HOH B 57 1111 1111 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 5GP . . . C 2 -12.61 60.016 68.276 1 66.27 ? P 5GP 190 A 1 HETATM 2 O O1P 5GP . . . C 2 -13.469 59.464 69.343 1 34.99 ? O1P 5GP 190 A 1 HETATM 3 O O2P 5GP . . . C 2 -11.182 59.73 68.492 1 33.16 ? O2P 5GP 190 A 1 HETATM 4 O O3P 5GP . . . C 2 -13.117 59.627 66.951 1 36.23 ? O3P 5GP 190 A 1 HETATM 5 O O5' 5GP . . . C 2 -12.903 61.571 68.246 1 39.17 ? O5' 5GP 190 A 1 HETATM 6 C C5' 5GP . . . C 2 -12.361 62.56 69.139 1 32.47 ? C5' 5GP 190 A 1 HETATM 7 C C4' 5GP . . . C 2 -12.676 63.931 68.628 1 34.26 ? C4' 5GP 190 A 1 HETATM 8 O O4' 5GP . . . C 2 -14.093 64.191 68.559 1 35.58 ? O4' 5GP 190 A 1 HETATM 9 C C3' 5GP . . . C 2 -12.111 64.96 69.552 1 35.51 ? C3' 5GP 190 A 1 HETATM 10 O O3' 5GP . . . C 2 -10.852 65.419 69.044 1 36.07 ? O3' 5GP 190 A 1 HETATM 11 C C2' 5GP . . . C 2 -13.098 66.065 69.529 1 36.65 ? C2' 5GP 190 A 1 HETATM 12 O O2' 5GP . . . C 2 -12.668 67.109 68.667 1 36.04 ? O2' 5GP 190 A 1 HETATM 13 C C1' 5GP . . . C 2 -14.45 65.486 69.077 1 38.66 ? C1' 5GP 190 A 1 HETATM 14 N N9 5GP . . . C 2 -15.413 65.371 70.279 1 32.37 ? N9 5GP 190 A 1 HETATM 15 C C8 5GP . . . C 2 -15.928 64.198 70.848 1 33.37 ? C8 5GP 190 A 1 HETATM 16 N N7 5GP . . . C 2 -16.738 64.387 71.879 1 34.13 ? N7 5GP 190 A 1 HETATM 17 C C5 5GP . . . C 2 -16.788 65.781 72.047 1 34.07 ? C5 5GP 190 A 1 HETATM 18 C C6 5GP . . . C 2 -17.521 66.589 73.016 1 33.33 ? C6 5GP 190 A 1 HETATM 19 O O6 5GP . . . C 2 -18.253 66.19 73.927 1 31.93 ? O6 5GP 190 A 1 HETATM 20 N N1 5GP . . . C 2 -17.317 67.98 72.855 1 33.09 ? N1 5GP 190 A 1 HETATM 21 C C2 5GP . . . C 2 -16.501 68.557 71.855 1 33.31 ? C2 5GP 190 A 1 HETATM 22 N N2 5GP . . . C 2 -16.411 69.893 71.824 1 32.39 ? N2 5GP 190 A 1 HETATM 23 N N3 5GP . . . C 2 -15.806 67.802 70.934 1 33.67 ? N3 5GP 190 A 1 HETATM 24 C C4 5GP . . . C 2 -15.994 66.415 71.069 1 33.72 ? C4 5GP 190 A 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 24 #