data_1GA7 # _model_server_result.job_id MnpmE7ixXTviKmlTY-r1xw _model_server_result.datetime_utc '2024-10-23 05:30:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ga7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 1GA7 # _exptl.entry_id 1GA7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 157.25 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'GADOLINIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1GA7 _cell.length_a 66.93 _cell.length_b 67.89 _cell.length_c 98.07 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1GA7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NH2 ARG 35 A ARG 35 4_555 C GD GD3 . A GD3 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.019 ? metalc ? metalc2 A OE1 GLU 112 A GLU 112 1_555 C GD GD3 . A GD3 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.67 ? metalc ? metalc3 A OE2 GLU 112 A GLU 112 1_555 C GD GD3 . A GD3 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.986 ? metalc ? metalc4 A OE2 GLU 115 A GLU 115 1_555 C GD GD3 . A GD3 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc5 B OE1 GLU 112 B GLU 112 1_555 D GD GD3 . B GD3 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.714 ? metalc ? metalc6 B OE2 GLU 112 B GLU 112 1_555 D GD GD3 . B GD3 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.702 ? metalc ? metalc7 B OE2 GLU 115 B GLU 115 1_555 D GD GD3 . B GD3 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.725 ? metalc ? metalc8 B OE1 GLU 164 B GLU 164 1_555 D GD GD3 . B GD3 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.783 ? metalc ? metalc9 B OE2 GLU 164 B GLU 164 1_555 D GD GD3 . B GD3 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? metalc ? metalc10 D GD GD3 . B GD3 301 1_555 F O HOH . B HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.817 ? metalc ? metalc11 D GD GD3 . B GD3 301 1_555 F O HOH . B HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.839 ? # _chem_comp.formula 'Gd 3' _chem_comp.formula_weight 157.25 _chem_comp.id GD3 _chem_comp.mon_nstd_flag . _chem_comp.name 'GADOLINIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1GA7 _atom_sites.fract_transf_matrix[1][1] 0.014941 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01473 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010197 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GD3 A 1 302 2 GD3 GD . D 2 GD3 B 1 301 1 GD3 GD . E 3 HOH A 1 303 1 HOH HOH . E 3 HOH A 2 304 3 HOH HOH . E 3 HOH A 3 305 5 HOH HOH . E 3 HOH A 4 306 10 HOH HOH . E 3 HOH A 5 307 11 HOH HOH . E 3 HOH A 6 308 13 HOH HOH . E 3 HOH A 7 309 16 HOH HOH . E 3 HOH A 8 310 17 HOH HOH . E 3 HOH A 9 311 19 HOH HOH . E 3 HOH A 10 312 20 HOH HOH . E 3 HOH A 11 313 22 HOH HOH . E 3 HOH A 12 314 23 HOH HOH . E 3 HOH A 13 315 24 HOH HOH . E 3 HOH A 14 316 25 HOH HOH . E 3 HOH A 15 317 28 HOH HOH . E 3 HOH A 16 318 31 HOH HOH . E 3 HOH A 17 319 33 HOH HOH . E 3 HOH A 18 320 36 HOH HOH . E 3 HOH A 19 321 37 HOH HOH . E 3 HOH A 20 322 43 HOH HOH . E 3 HOH A 21 323 44 HOH HOH . E 3 HOH A 22 324 45 HOH HOH . E 3 HOH A 23 325 46 HOH HOH . E 3 HOH A 24 326 48 HOH HOH . E 3 HOH A 25 327 52 HOH HOH . E 3 HOH A 26 328 53 HOH HOH . E 3 HOH A 27 329 54 HOH HOH . E 3 HOH A 28 330 56 HOH HOH . E 3 HOH A 29 331 58 HOH HOH . E 3 HOH A 30 332 59 HOH HOH . E 3 HOH A 31 333 62 HOH HOH . E 3 HOH A 32 334 63 HOH HOH . E 3 HOH A 33 335 66 HOH HOH . E 3 HOH A 34 336 67 HOH HOH . E 3 HOH A 35 337 68 HOH HOH . E 3 HOH A 36 338 71 HOH HOH . E 3 HOH A 37 339 74 HOH HOH . E 3 HOH A 38 340 83 HOH HOH . E 3 HOH A 39 341 84 HOH HOH . E 3 HOH A 40 342 85 HOH HOH . E 3 HOH A 41 343 86 HOH HOH . E 3 HOH A 42 344 87 HOH HOH . E 3 HOH A 43 345 92 HOH HOH . E 3 HOH A 44 346 93 HOH HOH . E 3 HOH A 45 347 99 HOH HOH . E 3 HOH A 46 348 101 HOH HOH . E 3 HOH A 47 349 102 HOH HOH . E 3 HOH A 48 350 104 HOH HOH . E 3 HOH A 49 351 105 HOH HOH . E 3 HOH A 50 352 107 HOH HOH . E 3 HOH A 51 353 109 HOH HOH . E 3 HOH A 52 354 112 HOH HOH . E 3 HOH A 53 355 115 HOH HOH . E 3 HOH A 54 356 117 HOH HOH . E 3 HOH A 55 357 118 HOH HOH . E 3 HOH A 56 358 121 HOH HOH . E 3 HOH A 57 359 124 HOH HOH . E 3 HOH A 58 360 125 HOH HOH . E 3 HOH A 59 361 126 HOH HOH . E 3 HOH A 60 362 127 HOH HOH . E 3 HOH A 61 363 129 HOH HOH . E 3 HOH A 62 364 131 HOH HOH . E 3 HOH A 63 365 133 HOH HOH . E 3 HOH A 64 366 135 HOH HOH . E 3 HOH A 65 367 137 HOH HOH . F 3 HOH B 1 302 2 HOH HOH . F 3 HOH B 2 303 6 HOH HOH . F 3 HOH B 3 304 8 HOH HOH . F 3 HOH B 4 305 9 HOH HOH . F 3 HOH B 5 306 14 HOH HOH . F 3 HOH B 6 307 15 HOH HOH . F 3 HOH B 7 308 18 HOH HOH . F 3 HOH B 8 309 21 HOH HOH . F 3 HOH B 9 310 26 HOH HOH . F 3 HOH B 10 311 27 HOH HOH . F 3 HOH B 11 312 29 HOH HOH . F 3 HOH B 12 313 30 HOH HOH . F 3 HOH B 13 314 32 HOH HOH . F 3 HOH B 14 315 35 HOH HOH . F 3 HOH B 15 316 38 HOH HOH . F 3 HOH B 16 317 39 HOH HOH . F 3 HOH B 17 318 40 HOH HOH . F 3 HOH B 18 319 41 HOH HOH . F 3 HOH B 19 320 42 HOH HOH . F 3 HOH B 20 321 47 HOH HOH . F 3 HOH B 21 322 49 HOH HOH . F 3 HOH B 22 323 50 HOH HOH . F 3 HOH B 23 324 51 HOH HOH . F 3 HOH B 24 325 55 HOH HOH . F 3 HOH B 25 326 57 HOH HOH . F 3 HOH B 26 327 60 HOH HOH . F 3 HOH B 27 328 61 HOH HOH . F 3 HOH B 28 329 64 HOH HOH . F 3 HOH B 29 330 65 HOH HOH . F 3 HOH B 30 331 69 HOH HOH . F 3 HOH B 31 332 70 HOH HOH . F 3 HOH B 32 333 72 HOH HOH . F 3 HOH B 33 334 73 HOH HOH . F 3 HOH B 34 335 75 HOH HOH . F 3 HOH B 35 336 76 HOH HOH . F 3 HOH B 36 337 77 HOH HOH . F 3 HOH B 37 338 78 HOH HOH . F 3 HOH B 38 339 79 HOH HOH . F 3 HOH B 39 340 80 HOH HOH . F 3 HOH B 40 341 81 HOH HOH . F 3 HOH B 41 342 82 HOH HOH . F 3 HOH B 42 343 88 HOH HOH . F 3 HOH B 43 344 89 HOH HOH . F 3 HOH B 44 345 90 HOH HOH . F 3 HOH B 45 346 91 HOH HOH . F 3 HOH B 46 347 94 HOH HOH . F 3 HOH B 47 348 95 HOH HOH . F 3 HOH B 48 349 96 HOH HOH . F 3 HOH B 49 350 97 HOH HOH . F 3 HOH B 50 351 98 HOH HOH . F 3 HOH B 51 352 103 HOH HOH . F 3 HOH B 52 353 106 HOH HOH . F 3 HOH B 53 354 108 HOH HOH . F 3 HOH B 54 355 111 HOH HOH . F 3 HOH B 55 356 113 HOH HOH . F 3 HOH B 56 357 114 HOH HOH . F 3 HOH B 57 358 116 HOH HOH . F 3 HOH B 58 359 119 HOH HOH . F 3 HOH B 59 360 120 HOH HOH . F 3 HOH B 60 361 122 HOH HOH . F 3 HOH B 61 362 123 HOH HOH . F 3 HOH B 62 363 128 HOH HOH . F 3 HOH B 63 364 130 HOH HOH . F 3 HOH B 64 365 132 HOH HOH . F 3 HOH B 65 366 134 HOH HOH . F 3 HOH B 66 367 136 HOH HOH . F 3 HOH B 67 368 138 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol GD _atom_site.label_atom_id GD _atom_site.label_comp_id GD3 _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 32.073 _atom_site.Cartn_y 35.029 _atom_site.Cartn_z 12.722 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 42.28 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id GD _atom_site.auth_comp_id GD3 _atom_site.auth_seq_id 301 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #