data_1GA8 # _model_server_result.job_id iaJtZmWihryAMMHJXukKjg _model_server_result.datetime_utc '2024-11-24 20:17:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ga8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":400}' # _entry.id 1GA8 # _exptl.entry_id 1GA8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1GA8 _cell.length_a 39.975 _cell.length_b 76.158 _cell.length_c 87.228 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1GA8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 Z9D _pdbx_entity_branch_link.comp_id_2 BGC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B BGC 1 B 1 BGC ? 500 DEL 2 n B Z9D 2 B 2 Z9D ? 500 DEL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 1 A MSE 1 1_555 A N ASP 2 A ASP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A C GLY 144 A GLY 144 1_555 A N MSE 145 A MSE 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A C MSE 145 A MSE 145 1_555 A N ALA 146 A ALA 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 A C LYS 171 A LYS 171 1_555 A N MSE 172 A MSE 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 A C MSE 172 A MSE 172 1_555 A N SER 173 A SER 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale6 A C VAL 183 A VAL 183 1_555 A N MSE 184 A MSE 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale7 A C MSE 184 A MSE 184 1_555 A N GLN 185 A GLN 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale8 A C PHE 209 A PHE 209 1_555 A N MSE 210 A MSE 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale9 A C MSE 210 A MSE 210 1_555 A N PRO 211 A PRO 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale10 A C PHE 216 A PHE 216 1_555 A N MSE 217 A MSE 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale11 A C VAL 237 A VAL 237 1_555 A N MSE 238 A MSE 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale12 A C MSE 238 A MSE 238 1_555 A N PRO 239 A PRO 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? covale ? covale13 B O4 BGC . B BGC 1 1_555 B C1 Z9D . B Z9D 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 sing metalc ? metalc1 A OD1 ASP 103 A ASP 103 1_555 C MN MN . A MN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc2 A OD1 ASP 105 A ASP 105 1_555 C MN MN . A MN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc3 A OD2 ASP 105 A ASP 105 1_555 C MN MN . A MN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc4 A NE2 HIS 244 A HIS 244 1_555 C MN MN . A MN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc5 C MN MN . A MN 400 1_555 D O1A UPF . A UPF 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc6 C MN MN . A MN 400 1_555 D O1B UPF . A UPF 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1GA8 _atom_sites.fract_transf_matrix[1][1] 0.025016 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013131 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011464 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MN A 1 400 400 MN MN . D 4 UPF A 1 501 300 UPF UPF . E 5 HOH A 1 600 600 HOH HOH . E 5 HOH A 2 601 601 HOH HOH . E 5 HOH A 3 602 602 HOH HOH . E 5 HOH A 4 603 603 HOH HOH . E 5 HOH A 5 604 604 HOH HOH . E 5 HOH A 6 605 605 HOH HOH . E 5 HOH A 7 606 606 HOH HOH . E 5 HOH A 8 607 607 HOH HOH . E 5 HOH A 9 608 608 HOH HOH . E 5 HOH A 10 609 609 HOH HOH . E 5 HOH A 11 610 610 HOH HOH . E 5 HOH A 12 611 611 HOH HOH . E 5 HOH A 13 612 612 HOH HOH . E 5 HOH A 14 613 613 HOH HOH . E 5 HOH A 15 614 614 HOH HOH . E 5 HOH A 16 615 615 HOH HOH . E 5 HOH A 17 616 616 HOH HOH . E 5 HOH A 18 617 617 HOH HOH . E 5 HOH A 19 618 618 HOH HOH . E 5 HOH A 20 619 619 HOH HOH . E 5 HOH A 21 620 620 HOH HOH . E 5 HOH A 22 621 621 HOH HOH . E 5 HOH A 23 622 622 HOH HOH . E 5 HOH A 24 623 623 HOH HOH . E 5 HOH A 25 624 624 HOH HOH . E 5 HOH A 26 625 625 HOH HOH . E 5 HOH A 27 626 626 HOH HOH . E 5 HOH A 28 627 627 HOH HOH . E 5 HOH A 29 628 628 HOH HOH . E 5 HOH A 30 629 629 HOH HOH . E 5 HOH A 31 630 630 HOH HOH . E 5 HOH A 32 631 631 HOH HOH . E 5 HOH A 33 632 632 HOH HOH . E 5 HOH A 34 633 633 HOH HOH . E 5 HOH A 35 634 634 HOH HOH . E 5 HOH A 36 635 635 HOH HOH . E 5 HOH A 37 636 636 HOH HOH . E 5 HOH A 38 637 637 HOH HOH . E 5 HOH A 39 638 638 HOH HOH . E 5 HOH A 40 639 639 HOH HOH . E 5 HOH A 41 640 640 HOH HOH . E 5 HOH A 42 641 641 HOH HOH . E 5 HOH A 43 642 642 HOH HOH . E 5 HOH A 44 643 643 HOH HOH . E 5 HOH A 45 644 644 HOH HOH . E 5 HOH A 46 645 645 HOH HOH . E 5 HOH A 47 646 646 HOH HOH . E 5 HOH A 48 647 647 HOH HOH . E 5 HOH A 49 648 648 HOH HOH . E 5 HOH A 50 649 649 HOH HOH . E 5 HOH A 51 650 650 HOH HOH . E 5 HOH A 52 651 651 HOH HOH . E 5 HOH A 53 652 652 HOH HOH . E 5 HOH A 54 653 653 HOH HOH . E 5 HOH A 55 654 654 HOH HOH . E 5 HOH A 56 655 655 HOH HOH . E 5 HOH A 57 656 656 HOH HOH . E 5 HOH A 58 657 657 HOH HOH . E 5 HOH A 59 658 658 HOH HOH . E 5 HOH A 60 659 659 HOH HOH . E 5 HOH A 61 660 660 HOH HOH . E 5 HOH A 62 661 661 HOH HOH . E 5 HOH A 63 662 662 HOH HOH . E 5 HOH A 64 663 663 HOH HOH . E 5 HOH A 65 664 664 HOH HOH . E 5 HOH A 66 665 665 HOH HOH . E 5 HOH A 67 666 666 HOH HOH . E 5 HOH A 68 667 667 HOH HOH . E 5 HOH A 69 668 668 HOH HOH . E 5 HOH A 70 669 669 HOH HOH . E 5 HOH A 71 670 670 HOH HOH . E 5 HOH A 72 671 671 HOH HOH . E 5 HOH A 73 672 672 HOH HOH . E 5 HOH A 74 673 673 HOH HOH . E 5 HOH A 75 674 674 HOH HOH . E 5 HOH A 76 675 675 HOH HOH . E 5 HOH A 77 676 676 HOH HOH . E 5 HOH A 78 677 677 HOH HOH . E 5 HOH A 79 678 678 HOH HOH . E 5 HOH A 80 679 679 HOH HOH . E 5 HOH A 81 680 680 HOH HOH . E 5 HOH A 82 681 681 HOH HOH . E 5 HOH A 83 682 682 HOH HOH . E 5 HOH A 84 683 683 HOH HOH . E 5 HOH A 85 684 684 HOH HOH . E 5 HOH A 86 685 685 HOH HOH . E 5 HOH A 87 686 686 HOH HOH . E 5 HOH A 88 687 687 HOH HOH . E 5 HOH A 89 688 688 HOH HOH . E 5 HOH A 90 689 689 HOH HOH . E 5 HOH A 91 690 690 HOH HOH . E 5 HOH A 92 691 691 HOH HOH . E 5 HOH A 93 692 692 HOH HOH . E 5 HOH A 94 693 693 HOH HOH . E 5 HOH A 95 694 694 HOH HOH . E 5 HOH A 96 695 695 HOH HOH . E 5 HOH A 97 696 696 HOH HOH . E 5 HOH A 98 697 697 HOH HOH . E 5 HOH A 99 698 698 HOH HOH . E 5 HOH A 100 699 699 HOH HOH . E 5 HOH A 101 700 700 HOH HOH . E 5 HOH A 102 701 701 HOH HOH . E 5 HOH A 103 702 702 HOH HOH . E 5 HOH A 104 703 703 HOH HOH . E 5 HOH A 105 704 704 HOH HOH . E 5 HOH A 106 705 705 HOH HOH . E 5 HOH A 107 706 706 HOH HOH . E 5 HOH A 108 707 707 HOH HOH . E 5 HOH A 109 708 708 HOH HOH . E 5 HOH A 110 709 709 HOH HOH . E 5 HOH A 111 710 710 HOH HOH . E 5 HOH A 112 711 711 HOH HOH . E 5 HOH A 113 712 712 HOH HOH . E 5 HOH A 114 713 713 HOH HOH . E 5 HOH A 115 714 714 HOH HOH . E 5 HOH A 116 715 715 HOH HOH . E 5 HOH A 117 716 716 HOH HOH . E 5 HOH A 118 717 717 HOH HOH . E 5 HOH A 119 718 718 HOH HOH . E 5 HOH A 120 719 719 HOH HOH . E 5 HOH A 121 720 720 HOH HOH . E 5 HOH A 122 721 721 HOH HOH . E 5 HOH A 123 722 722 HOH HOH . E 5 HOH A 124 723 723 HOH HOH . E 5 HOH A 125 724 724 HOH HOH . E 5 HOH A 126 725 725 HOH HOH . E 5 HOH A 127 726 726 HOH HOH . E 5 HOH A 128 727 727 HOH HOH . E 5 HOH A 129 728 728 HOH HOH . E 5 HOH A 130 729 729 HOH HOH . E 5 HOH A 131 730 730 HOH HOH . E 5 HOH A 132 731 731 HOH HOH . E 5 HOH A 133 732 732 HOH HOH . E 5 HOH A 134 733 733 HOH HOH . E 5 HOH A 135 734 734 HOH HOH . E 5 HOH A 136 735 735 HOH HOH . E 5 HOH A 137 736 736 HOH HOH . E 5 HOH A 138 737 737 HOH HOH . E 5 HOH A 139 738 738 HOH HOH . E 5 HOH A 140 739 739 HOH HOH . E 5 HOH A 141 740 740 HOH HOH . E 5 HOH A 142 741 741 HOH HOH . E 5 HOH A 143 742 742 HOH HOH . E 5 HOH A 144 743 743 HOH HOH . E 5 HOH A 145 744 744 HOH HOH . E 5 HOH A 146 745 745 HOH HOH . E 5 HOH A 147 746 746 HOH HOH . E 5 HOH A 148 747 747 HOH HOH . E 5 HOH A 149 748 748 HOH HOH . E 5 HOH A 150 749 749 HOH HOH . E 5 HOH A 151 750 750 HOH HOH . E 5 HOH A 152 751 751 HOH HOH . E 5 HOH A 153 752 752 HOH HOH . E 5 HOH A 154 753 753 HOH HOH . E 5 HOH A 155 754 754 HOH HOH . E 5 HOH A 156 755 755 HOH HOH . E 5 HOH A 157 756 756 HOH HOH . E 5 HOH A 158 757 757 HOH HOH . E 5 HOH A 159 758 758 HOH HOH . E 5 HOH A 160 759 759 HOH HOH . E 5 HOH A 161 760 760 HOH HOH . E 5 HOH A 162 761 761 HOH HOH . E 5 HOH A 163 762 762 HOH HOH . E 5 HOH A 164 763 763 HOH HOH . E 5 HOH A 165 764 764 HOH HOH . E 5 HOH A 166 765 765 HOH HOH . E 5 HOH A 167 766 766 HOH HOH . E 5 HOH A 168 767 767 HOH HOH . E 5 HOH A 169 768 768 HOH HOH . E 5 HOH A 170 769 769 HOH HOH . E 5 HOH A 171 770 770 HOH HOH . E 5 HOH A 172 771 771 HOH HOH . E 5 HOH A 173 772 772 HOH HOH . E 5 HOH A 174 773 773 HOH HOH . E 5 HOH A 175 774 774 HOH HOH . E 5 HOH A 176 775 775 HOH HOH . E 5 HOH A 177 776 776 HOH HOH . E 5 HOH A 178 777 777 HOH HOH . E 5 HOH A 179 778 778 HOH HOH . E 5 HOH A 180 779 779 HOH HOH . E 5 HOH A 181 780 780 HOH HOH . E 5 HOH A 182 781 781 HOH HOH . E 5 HOH A 183 782 782 HOH HOH . E 5 HOH A 184 783 783 HOH HOH . E 5 HOH A 185 784 784 HOH HOH . E 5 HOH A 186 785 785 HOH HOH . E 5 HOH A 187 786 786 HOH HOH . E 5 HOH A 188 787 787 HOH HOH . E 5 HOH A 189 788 788 HOH HOH . E 5 HOH A 190 789 789 HOH HOH . E 5 HOH A 191 790 790 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 29.042 _atom_site.Cartn_y 50.755 _atom_site.Cartn_z 62.739 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 11.28 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 400 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 33 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #