data_1GAF
#
_model_server_result.job_id            pK9mdND8tBAVaGfGDW1XFg 
_model_server_result.datetime_utc      '2024-11-23 03:39:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1gaf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":218}' 
#
_entry.id    1GAF 
#
_exptl.entry_id    1GAF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              302.197 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '5-(PARA-NITROPHENYL PHOSPHONATE)-PENTANOIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          121.55 
_cell.angle_gamma         90 
_cell.entry_id            1GAF 
_cell.length_a            140.26 
_cell.length_b            44.85 
_cell.length_c            85.45 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1GAF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 23 L CYS 23 1_555 A SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf2 A SG CYS 134 L CYS 134 1_555 A SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf3 A SG CYS 214 L CYS 214 1_555 B SG CYS 217 H CYS 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf5 B SG CYS 141 H CYS 141 1_555 B SG CYS 197 H CYS 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
#
_chem_comp.formula           'C11 H13 N O7 P -1' 
_chem_comp.formula_weight    302.197 
_chem_comp.id                NPE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '5-(PARA-NITROPHENYL PHOSPHONATE)-PENTANOIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 N1 NPE sing 237 n n 
C1 C2 NPE doub 238 n y 
C1 C6 NPE sing 239 n y 
N1 O1N NPE sing 240 n n 
N1 O2N NPE doub 241 n n 
C2 C3 NPE sing 242 n y 
C2 H2 NPE sing 243 n n 
C3 C4 NPE doub 244 n y 
C3 H3 NPE sing 245 n n 
C4 C5 NPE sing 246 n y 
C4 O3P NPE sing 247 n n 
C5 C6 NPE doub 248 n y 
C5 H5 NPE sing 249 n n 
C6 H6 NPE sing 250 n n 
O3P P NPE sing 251 n n 
P O1P NPE doub 252 n n 
P O2P NPE sing 253 n n 
P C7 NPE sing 254 n n 
C7 C8 NPE sing 255 n n 
C7 H71 NPE sing 256 n n 
C7 H72 NPE sing 257 n n 
C8 C9 NPE sing 258 n n 
C8 H81 NPE sing 259 n n 
C8 H82 NPE sing 260 n n 
C9 C10 NPE sing 261 n n 
C9 H91 NPE sing 262 n n 
C9 H92 NPE sing 263 n n 
C10 C11 NPE sing 264 n n 
C10 H101 NPE sing 265 n n 
C10 H102 NPE sing 266 n n 
C11 O1 NPE doub 267 n n 
C11 O2 NPE sing 268 n n 
O2 HO2 NPE sing 269 n n 
#
_atom_sites.entry_id                     1GAF 
_atom_sites.fract_transf_matrix[1][1]    0.00713 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004378 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.022297 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013733 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NPE H 1 218 1 NPE NPE . 
D 4 HOH L 1 215 3 HOH HOH . 
D 4 HOH L 2 216 4 HOH HOH . 
D 4 HOH L 3 217 5 HOH HOH . 
D 4 HOH L 4 218 6 HOH HOH . 
D 4 HOH L 5 219 7 HOH HOH . 
D 4 HOH L 6 220 8 HOH HOH . 
D 4 HOH L 7 221 9 HOH HOH . 
D 4 HOH L 8 222 10 HOH HOH . 
D 4 HOH L 9 223 11 HOH HOH . 
D 4 HOH L 10 224 12 HOH HOH . 
D 4 HOH L 11 225 13 HOH HOH . 
D 4 HOH L 12 226 15 HOH HOH . 
D 4 HOH L 13 227 16 HOH HOH . 
D 4 HOH L 14 228 17 HOH HOH . 
D 4 HOH L 15 229 18 HOH HOH . 
D 4 HOH L 16 230 19 HOH HOH . 
D 4 HOH L 17 231 24 HOH HOH . 
D 4 HOH L 18 232 25 HOH HOH . 
D 4 HOH L 19 233 26 HOH HOH . 
D 4 HOH L 20 234 31 HOH HOH . 
D 4 HOH L 21 235 32 HOH HOH . 
D 4 HOH L 22 236 35 HOH HOH . 
D 4 HOH L 23 237 36 HOH HOH . 
D 4 HOH L 24 238 40 HOH HOH . 
D 4 HOH L 25 239 41 HOH HOH . 
D 4 HOH L 26 240 45 HOH HOH . 
D 4 HOH L 27 241 50 HOH HOH . 
D 4 HOH L 28 242 53 HOH HOH . 
D 4 HOH L 29 243 55 HOH HOH . 
D 4 HOH L 30 244 57 HOH HOH . 
D 4 HOH L 31 245 58 HOH HOH . 
D 4 HOH L 32 246 62 HOH HOH . 
D 4 HOH L 33 247 64 HOH HOH . 
D 4 HOH L 34 248 65 HOH HOH . 
D 4 HOH L 35 249 68 HOH HOH . 
D 4 HOH L 36 250 69 HOH HOH . 
D 4 HOH L 37 251 71 HOH HOH . 
D 4 HOH L 38 252 73 HOH HOH . 
D 4 HOH L 39 253 77 HOH HOH . 
D 4 HOH L 40 254 80 HOH HOH . 
D 4 HOH L 41 255 81 HOH HOH . 
D 4 HOH L 42 256 82 HOH HOH . 
D 4 HOH L 43 257 84 HOH HOH . 
D 4 HOH L 44 258 88 HOH HOH . 
D 4 HOH L 45 259 93 HOH HOH . 
D 4 HOH L 46 260 96 HOH HOH . 
D 4 HOH L 47 261 101 HOH HOH . 
D 4 HOH L 48 262 102 HOH HOH . 
D 4 HOH L 49 263 103 HOH HOH . 
D 4 HOH L 50 264 105 HOH HOH . 
D 4 HOH L 51 265 106 HOH HOH . 
D 4 HOH L 52 266 107 HOH HOH . 
D 4 HOH L 53 267 112 HOH HOH . 
D 4 HOH L 54 268 116 HOH HOH . 
D 4 HOH L 55 269 117 HOH HOH . 
D 4 HOH L 56 270 119 HOH HOH . 
D 4 HOH L 57 271 121 HOH HOH . 
D 4 HOH L 58 272 124 HOH HOH . 
D 4 HOH L 59 273 127 HOH HOH . 
D 4 HOH L 60 274 128 HOH HOH . 
D 4 HOH L 61 275 131 HOH HOH . 
D 4 HOH L 62 276 132 HOH HOH . 
D 4 HOH L 63 277 134 HOH HOH . 
D 4 HOH L 64 278 136 HOH HOH . 
D 4 HOH L 65 279 137 HOH HOH . 
D 4 HOH L 66 280 138 HOH HOH . 
D 4 HOH L 67 281 139 HOH HOH . 
D 4 HOH L 68 282 140 HOH HOH . 
D 4 HOH L 69 283 141 HOH HOH . 
D 4 HOH L 70 284 143 HOH HOH . 
D 4 HOH L 71 285 145 HOH HOH . 
D 4 HOH L 72 286 147 HOH HOH . 
D 4 HOH L 73 287 151 HOH HOH . 
E 4 HOH H 1 219 1 HOH HOH . 
E 4 HOH H 2 220 2 HOH HOH . 
E 4 HOH H 3 221 14 HOH HOH . 
E 4 HOH H 4 222 20 HOH HOH . 
E 4 HOH H 5 223 21 HOH HOH . 
E 4 HOH H 6 224 22 HOH HOH . 
E 4 HOH H 7 225 23 HOH HOH . 
E 4 HOH H 8 226 27 HOH HOH . 
E 4 HOH H 9 227 28 HOH HOH . 
E 4 HOH H 10 228 29 HOH HOH . 
E 4 HOH H 11 229 30 HOH HOH . 
E 4 HOH H 12 230 33 HOH HOH . 
E 4 HOH H 13 231 34 HOH HOH . 
E 4 HOH H 14 232 37 HOH HOH . 
E 4 HOH H 15 233 38 HOH HOH . 
E 4 HOH H 16 234 39 HOH HOH . 
E 4 HOH H 17 235 42 HOH HOH . 
E 4 HOH H 18 236 43 HOH HOH . 
E 4 HOH H 19 237 44 HOH HOH . 
E 4 HOH H 20 238 46 HOH HOH . 
E 4 HOH H 21 239 47 HOH HOH . 
E 4 HOH H 22 240 48 HOH HOH . 
E 4 HOH H 23 241 49 HOH HOH . 
E 4 HOH H 24 242 51 HOH HOH . 
E 4 HOH H 25 243 52 HOH HOH . 
E 4 HOH H 26 244 54 HOH HOH . 
E 4 HOH H 27 245 56 HOH HOH . 
E 4 HOH H 28 246 59 HOH HOH . 
E 4 HOH H 29 247 60 HOH HOH . 
E 4 HOH H 30 248 61 HOH HOH . 
E 4 HOH H 31 249 63 HOH HOH . 
E 4 HOH H 32 250 66 HOH HOH . 
E 4 HOH H 33 251 67 HOH HOH . 
E 4 HOH H 34 252 70 HOH HOH . 
E 4 HOH H 35 253 72 HOH HOH . 
E 4 HOH H 36 254 74 HOH HOH . 
E 4 HOH H 37 255 75 HOH HOH . 
E 4 HOH H 38 256 76 HOH HOH . 
E 4 HOH H 39 257 78 HOH HOH . 
E 4 HOH H 40 258 79 HOH HOH . 
E 4 HOH H 41 259 83 HOH HOH . 
E 4 HOH H 42 260 85 HOH HOH . 
E 4 HOH H 43 261 86 HOH HOH . 
E 4 HOH H 44 262 87 HOH HOH . 
E 4 HOH H 45 263 89 HOH HOH . 
E 4 HOH H 46 264 90 HOH HOH . 
E 4 HOH H 47 265 91 HOH HOH . 
E 4 HOH H 48 266 92 HOH HOH . 
E 4 HOH H 49 267 94 HOH HOH . 
E 4 HOH H 50 268 95 HOH HOH . 
E 4 HOH H 51 269 97 HOH HOH . 
E 4 HOH H 52 270 98 HOH HOH . 
E 4 HOH H 53 271 99 HOH HOH . 
E 4 HOH H 54 272 100 HOH HOH . 
E 4 HOH H 55 273 104 HOH HOH . 
E 4 HOH H 56 274 108 HOH HOH . 
E 4 HOH H 57 275 109 HOH HOH . 
E 4 HOH H 58 276 110 HOH HOH . 
E 4 HOH H 59 277 111 HOH HOH . 
E 4 HOH H 60 278 113 HOH HOH . 
E 4 HOH H 61 279 114 HOH HOH . 
E 4 HOH H 62 280 115 HOH HOH . 
E 4 HOH H 63 281 118 HOH HOH . 
E 4 HOH H 64 282 120 HOH HOH . 
E 4 HOH H 65 283 122 HOH HOH . 
E 4 HOH H 66 284 123 HOH HOH . 
E 4 HOH H 67 285 125 HOH HOH . 
E 4 HOH H 68 286 126 HOH HOH . 
E 4 HOH H 69 287 129 HOH HOH . 
E 4 HOH H 70 288 130 HOH HOH . 
E 4 HOH H 71 289 133 HOH HOH . 
E 4 HOH H 72 290 135 HOH HOH . 
E 4 HOH H 73 291 142 HOH HOH . 
E 4 HOH H 74 292 144 HOH HOH . 
E 4 HOH H 75 293 146 HOH HOH . 
E 4 HOH H 76 294 148 HOH HOH . 
E 4 HOH H 77 295 149 HOH HOH . 
E 4 HOH H 78 296 150 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NPE . . . C 3 56.627 -8.876 14.951 1 18.89 ? C1 NPE 218 H 1 
HETATM 2 N N1 NPE . . . C 3 55.822 -9.034 16.133 1 12.03 ? N1 NPE 218 H 1 
HETATM 3 O O1N NPE . . . C 3 54.728 -8.171 16.252 1 16.49 ? O1N NPE 218 H 1 
HETATM 4 O O2N NPE . . . C 3 56.228 -10.026 17.034 1 16.52 ? O2N NPE 218 H 1 
HETATM 5 C C2 NPE . . . C 3 57.769 -9.705 14.761 1 16.85 ? C2 NPE 218 H 1 
HETATM 6 C C3 NPE . . . C 3 58.561 -9.575 13.602 1 14.97 ? C3 NPE 218 H 1 
HETATM 7 C C4 NPE . . . C 3 58.22 -8.622 12.623 1 16.22 ? C4 NPE 218 H 1 
HETATM 8 C C5 NPE . . . C 3 57.088 -7.79 12.792 1 16.29 ? C5 NPE 218 H 1 
HETATM 9 C C6 NPE . . . C 3 56.294 -7.911 13.95 1 17.3 ? C6 NPE 218 H 1 
HETATM 10 O O3P NPE . . . C 3 58.999 -8.568 11.452 1 18.28 ? O3P NPE 218 H 1 
HETATM 11 P P NPE . . . C 3 60.121 -7.601 11.12 1 13.32 ? P NPE 218 H 1 
HETATM 12 O O1P NPE . . . C 3 60.015 -7.319 9.728 1 15.56 ? O1P NPE 218 H 1 
HETATM 13 O O2P NPE . . . C 3 59.922 -6.384 11.845 1 10.23 ? O2P NPE 218 H 1 
HETATM 14 C C7 NPE . . . C 3 61.685 -8.303 11.603 1 17.92 ? C7 NPE 218 H 1 
HETATM 15 C C8 NPE . . . C 3 61.818 -9.705 11.03 1 26.47 ? C8 NPE 218 H 1 
HETATM 16 C C9 NPE . . . C 3 63.258 -10.196 11.201 1 32.1 ? C9 NPE 218 H 1 
HETATM 17 C C10 NPE . . . C 3 63.259 -11.666 11.624 1 39.93 ? C10 NPE 218 H 1 
HETATM 18 C C11 NPE . . . C 3 64.7 -12.087 11.902 1 45.89 ? C11 NPE 218 H 1 
HETATM 19 O O1 NPE . . . C 3 65.166 -12.223 12.996 1 45.47 ? O1 NPE 218 H 1 
HETATM 20 O O2 NPE . . . C 3 65.334 -12.273 10.72 1 48.42 ? O2 NPE 218 H 1 
HETATM 21 H H2 NPE . . . C 3 58.164 -10.261 15.59 1 0 ? H2 NPE 218 H 1 
HETATM 22 H H3 NPE . . . C 3 59.6 -9.831 13.682 1 0 ? H3 NPE 218 H 1 
HETATM 23 H H5 NPE . . . C 3 56.992 -6.908 12.188 1 0 ? H5 NPE 218 H 1 
HETATM 24 H H6 NPE . . . C 3 55.502 -7.205 14.125 1 0 ? H6 NPE 218 H 1 
HETATM 25 H H71 NPE . . . C 3 61.729 -8.35 12.68 1 0 ? H71 NPE 218 H 1 
HETATM 26 H H72 NPE . . . C 3 62.479 -7.675 11.232 1 0 ? H72 NPE 218 H 1 
HETATM 27 H H81 NPE . . . C 3 61.564 -9.676 9.98 1 0 ? H81 NPE 218 H 1 
HETATM 28 H H82 NPE . . . C 3 61.133 -10.364 11.543 1 0 ? H82 NPE 218 H 1 
HETATM 29 H H91 NPE . . . C 3 63.766 -9.607 11.95 1 0 ? H91 NPE 218 H 1 
HETATM 30 H H92 NPE . . . C 3 63.784 -10.104 10.263 1 0 ? H92 NPE 218 H 1 
HETATM 31 H H101 NPE . . . C 3 62.848 -12.278 10.834 1 0 ? H101 NPE 218 H 1 
HETATM 32 H H102 NPE . . . C 3 62.675 -11.79 12.522 1 0 ? H102 NPE 218 H 1 
#
_model_server_stats.io_time_ms              66 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           271 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           32 
#