data_1GAL # _model_server_result.job_id K1JteMhLTqhlWjy42YiO2A _model_server_result.datetime_utc '2024-11-24 01:31:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1gal # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":604}' # _entry.id 1GAL # _exptl.entry_id 1GAL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1GAL _cell.length_a 66.5 _cell.length_b 66.5 _cell.length_c 214.5 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1GAL _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 2 5 4 MAN MAN C1 O1 . O2 HO2 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG ? 601 NAG 2 n B NAG 2 B 2 NAG ? 602 NAG 2 n B BMA 3 B 3 BMA ? 613 MAN 2 n B MAN 4 B 4 MAN ? 615 MAN 2 n B MAN 5 B 5 MAN ? 616 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 164 A CYS 164 1_555 A SG CYS 206 A CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? covale ? covale1 A ND2 ASN 89 A ASN 89 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.392 ? covale ? covale2 A ND2 ASN 161 A ASN 161 1_555 E C1 NAG . A NAG 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.393 ? covale ? covale3 A ND2 ASN 168 A ASN 168 1_555 F C1 NAG . A NAG 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale4 A ND2 ASN 355 A ASN 355 1_555 C C1 NAG . A NAG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.403 ? covale ? covale5 A ND2 ASN 388 A ASN 388 1_555 D C1 NAG . A NAG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale6 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.404 ? covale ? covale7 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.385 ? covale ? covale8 B O3 BMA . B BMA 3 1_555 B C1 MAN . B MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? covale ? covale9 B O2 MAN . B MAN 4 1_555 B C1 MAN . B MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 376 n n C1 O1 NAG sing 377 n n C1 O5 NAG sing 378 n n C1 H1 NAG sing 379 n n C2 C3 NAG sing 380 n n C2 N2 NAG sing 381 n n C2 H2 NAG sing 382 n n C3 C4 NAG sing 383 n n C3 O3 NAG sing 384 n n C3 H3 NAG sing 385 n n C4 C5 NAG sing 386 n n C4 O4 NAG sing 387 n n C4 H4 NAG sing 388 n n C5 C6 NAG sing 389 n n C5 O5 NAG sing 390 n n C5 H5 NAG sing 391 n n C6 O6 NAG sing 392 n n C6 H61 NAG sing 393 n n C6 H62 NAG sing 394 n n C7 C8 NAG sing 395 n n C7 N2 NAG sing 396 n n C7 O7 NAG doub 397 n n C8 H81 NAG sing 398 n n C8 H82 NAG sing 399 n n C8 H83 NAG sing 400 n n N2 HN2 NAG sing 401 n n O1 HO1 NAG sing 402 n n O3 HO3 NAG sing 403 n n O4 HO4 NAG sing 404 n n O6 HO6 NAG sing 405 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1GAL _atom_sites.fract_transf_matrix[1][1] 0.015038 _atom_sites.fract_transf_matrix[1][2] 0.008682 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017364 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004662 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 604 604 NAG NAG . D 3 NAG A 1 605 605 NAG NAG . E 3 NAG A 1 608 608 NAG NAG . F 3 NAG A 1 609 609 NAG NAG . G 4 FAD A 1 600 600 FAD FAD . H 5 HOH A 1 700 700 HOH HOH . H 5 HOH A 2 701 701 HOH HOH . H 5 HOH A 3 702 702 HOH HOH . H 5 HOH A 4 703 703 HOH HOH . H 5 HOH A 5 704 704 HOH HOH . H 5 HOH A 6 705 705 HOH HOH . H 5 HOH A 7 706 706 HOH HOH . H 5 HOH A 8 707 707 HOH HOH . H 5 HOH A 9 708 708 HOH HOH . H 5 HOH A 10 709 709 HOH HOH . H 5 HOH A 11 710 710 HOH HOH . H 5 HOH A 12 711 711 HOH HOH . H 5 HOH A 13 712 712 HOH HOH . H 5 HOH A 14 713 713 HOH HOH . H 5 HOH A 15 714 714 HOH HOH . H 5 HOH A 16 715 715 HOH HOH . H 5 HOH A 17 716 716 HOH HOH . H 5 HOH A 18 717 717 HOH HOH . H 5 HOH A 19 718 718 HOH HOH . H 5 HOH A 20 719 719 HOH HOH . H 5 HOH A 21 720 720 HOH HOH . H 5 HOH A 22 721 721 HOH HOH . H 5 HOH A 23 722 722 HOH HOH . H 5 HOH A 24 723 723 HOH HOH . H 5 HOH A 25 724 724 HOH HOH . H 5 HOH A 26 725 725 HOH HOH . H 5 HOH A 27 726 726 HOH HOH . H 5 HOH A 28 727 727 HOH HOH . H 5 HOH A 29 728 728 HOH HOH . H 5 HOH A 30 729 729 HOH HOH . H 5 HOH A 31 730 730 HOH HOH . H 5 HOH A 32 731 731 HOH HOH . H 5 HOH A 33 732 732 HOH HOH . H 5 HOH A 34 733 733 HOH HOH . H 5 HOH A 35 734 734 HOH HOH . H 5 HOH A 36 735 735 HOH HOH . H 5 HOH A 37 736 736 HOH HOH . H 5 HOH A 38 737 737 HOH HOH . H 5 HOH A 39 738 738 HOH HOH . H 5 HOH A 40 739 739 HOH HOH . H 5 HOH A 41 740 740 HOH HOH . H 5 HOH A 42 741 741 HOH HOH . H 5 HOH A 43 742 742 HOH HOH . H 5 HOH A 44 743 743 HOH HOH . H 5 HOH A 45 744 744 HOH HOH . H 5 HOH A 46 745 745 HOH HOH . H 5 HOH A 47 746 746 HOH HOH . H 5 HOH A 48 747 747 HOH HOH . H 5 HOH A 49 748 748 HOH HOH . H 5 HOH A 50 749 749 HOH HOH . H 5 HOH A 51 750 750 HOH HOH . H 5 HOH A 52 751 751 HOH HOH . H 5 HOH A 53 752 752 HOH HOH . H 5 HOH A 54 753 753 HOH HOH . H 5 HOH A 55 754 754 HOH HOH . H 5 HOH A 56 756 756 HOH HOH . H 5 HOH A 57 757 757 HOH HOH . H 5 HOH A 58 758 758 HOH HOH . H 5 HOH A 59 759 759 HOH HOH . H 5 HOH A 60 760 760 HOH HOH . H 5 HOH A 61 761 761 HOH HOH . H 5 HOH A 62 762 762 HOH HOH . H 5 HOH A 63 763 763 HOH HOH . H 5 HOH A 64 764 764 HOH HOH . H 5 HOH A 65 765 765 HOH HOH . H 5 HOH A 66 766 766 HOH HOH . H 5 HOH A 67 767 767 HOH HOH . H 5 HOH A 68 768 768 HOH HOH . H 5 HOH A 69 769 769 HOH HOH . H 5 HOH A 70 770 770 HOH HOH . H 5 HOH A 71 771 771 HOH HOH . H 5 HOH A 72 772 772 HOH HOH . H 5 HOH A 73 773 773 HOH HOH . H 5 HOH A 74 774 774 HOH HOH . H 5 HOH A 75 775 775 HOH HOH . H 5 HOH A 76 776 776 HOH HOH . H 5 HOH A 77 777 777 HOH HOH . H 5 HOH A 78 778 778 HOH HOH . H 5 HOH A 79 779 779 HOH HOH . H 5 HOH A 80 780 780 HOH HOH . H 5 HOH A 81 781 781 HOH HOH . H 5 HOH A 82 782 782 HOH HOH . H 5 HOH A 83 783 783 HOH HOH . H 5 HOH A 84 784 784 HOH HOH . H 5 HOH A 85 785 785 HOH HOH . H 5 HOH A 86 786 786 HOH HOH . H 5 HOH A 87 787 787 HOH HOH . H 5 HOH A 88 788 788 HOH HOH . H 5 HOH A 89 789 789 HOH HOH . H 5 HOH A 90 790 790 HOH HOH . H 5 HOH A 91 791 791 HOH HOH . H 5 HOH A 92 793 793 HOH HOH . H 5 HOH A 93 794 794 HOH HOH . H 5 HOH A 94 796 796 HOH HOH . H 5 HOH A 95 797 797 HOH HOH . H 5 HOH A 96 798 798 HOH HOH . H 5 HOH A 97 799 799 HOH HOH . H 5 HOH A 98 800 800 HOH HOH . H 5 HOH A 99 801 801 HOH HOH . H 5 HOH A 100 802 802 HOH HOH . H 5 HOH A 101 803 803 HOH HOH . H 5 HOH A 102 804 804 HOH HOH . H 5 HOH A 103 805 805 HOH HOH . H 5 HOH A 104 806 806 HOH HOH . H 5 HOH A 105 807 807 HOH HOH . H 5 HOH A 106 808 808 HOH HOH . H 5 HOH A 107 810 810 HOH HOH . H 5 HOH A 108 811 811 HOH HOH . H 5 HOH A 109 812 812 HOH HOH . H 5 HOH A 110 813 813 HOH HOH . H 5 HOH A 111 814 814 HOH HOH . H 5 HOH A 112 815 815 HOH HOH . H 5 HOH A 113 816 816 HOH HOH . H 5 HOH A 114 817 817 HOH HOH . H 5 HOH A 115 818 818 HOH HOH . H 5 HOH A 116 819 819 HOH HOH . H 5 HOH A 117 820 820 HOH HOH . H 5 HOH A 118 821 821 HOH HOH . H 5 HOH A 119 822 822 HOH HOH . H 5 HOH A 120 823 823 HOH HOH . H 5 HOH A 121 824 824 HOH HOH . H 5 HOH A 122 825 825 HOH HOH . H 5 HOH A 123 826 826 HOH HOH . H 5 HOH A 124 827 827 HOH HOH . H 5 HOH A 125 828 828 HOH HOH . H 5 HOH A 126 829 829 HOH HOH . H 5 HOH A 127 830 830 HOH HOH . H 5 HOH A 128 831 831 HOH HOH . H 5 HOH A 129 832 832 HOH HOH . H 5 HOH A 130 833 833 HOH HOH . H 5 HOH A 131 834 834 HOH HOH . H 5 HOH A 132 835 835 HOH HOH . H 5 HOH A 133 836 836 HOH HOH . H 5 HOH A 134 837 837 HOH HOH . H 5 HOH A 135 838 838 HOH HOH . H 5 HOH A 136 839 839 HOH HOH . H 5 HOH A 137 840 840 HOH HOH . H 5 HOH A 138 841 841 HOH HOH . H 5 HOH A 139 842 842 HOH HOH . H 5 HOH A 140 843 843 HOH HOH . H 5 HOH A 141 844 844 HOH HOH . H 5 HOH A 142 845 845 HOH HOH . H 5 HOH A 143 846 846 HOH HOH . H 5 HOH A 144 847 847 HOH HOH . H 5 HOH A 145 848 848 HOH HOH . H 5 HOH A 146 849 849 HOH HOH . H 5 HOH A 147 850 850 HOH HOH . H 5 HOH A 148 851 851 HOH HOH . H 5 HOH A 149 852 852 HOH HOH . H 5 HOH A 150 853 853 HOH HOH . H 5 HOH A 151 854 854 HOH HOH . H 5 HOH A 152 855 855 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . C 3 62.594 9.636 39.552 1 23.86 ? C1 NAG 604 A 1 HETATM 2 C C2 NAG . . . C 3 62.65 10.363 38.216 1 23.86 ? C2 NAG 604 A 1 HETATM 3 C C3 NAG . . . C 3 62.704 9.318 37.106 1 23.86 ? C3 NAG 604 A 1 HETATM 4 C C4 NAG . . . C 3 63.971 8.472 37.352 1 23.86 ? C4 NAG 604 A 1 HETATM 5 C C5 NAG . . . C 3 64.089 7.992 38.808 1 23.86 ? C5 NAG 604 A 1 HETATM 6 C C6 NAG . . . C 3 65.48 7.408 38.939 1 23.86 ? C6 NAG 604 A 1 HETATM 7 C C7 NAG . . . C 3 60.354 11.395 37.946 1 23.86 ? C7 NAG 604 A 1 HETATM 8 C C8 NAG . . . C 3 59.774 12.746 37.824 1 23.86 ? C8 NAG 604 A 1 HETATM 9 N N2 NAG . . . C 3 61.682 11.446 38.097 1 23.86 ? N2 NAG 604 A 1 HETATM 10 O O3 NAG . . . C 3 62.889 9.848 35.77 1 23.86 ? O3 NAG 604 A 1 HETATM 11 O O4 NAG . . . C 3 64.045 7.251 36.594 1 23.86 ? O4 NAG 604 A 1 HETATM 12 O O5 NAG . . . C 3 63.931 9.052 39.725 1 23.86 ? O5 NAG 604 A 1 HETATM 13 O O6 NAG . . . C 3 65.801 7.371 40.281 1 23.86 ? O6 NAG 604 A 1 HETATM 14 O O7 NAG . . . C 3 59.773 10.397 37.914 1 23.86 ? O7 NAG 604 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 14 #