data_1GBF # _model_server_result.job_id 5eTSIEMPNXq7RpxfD8QdcA _model_server_result.datetime_utc '2024-11-21 23:45:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1gbf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2}' # _entry.id 1GBF # _exptl.entry_id 1GBF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1GBF _cell.length_a 66.2 _cell.length_b 66.2 _cell.length_c 80.18 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1GBF _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 17 A CYS 42 1_555 A SG CYS 37 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 101 A CYS 137 1_555 A SG CYS 111 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? disulf ? disulf3 A SG CYS 137 A CYS 189 1_555 A SG CYS 170 A CYS 220 1_555 ? ? ? A ? ? ? ? ? ? ? ? 2.008 ? covale ? covale1 A OG SER 143 A SER 195 1_555 B B B2A 5 P B2A 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.395 ? covale ? covale2 B N B2A 5 P B2A 1 1_555 B C PRO 4 P PRO 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 319 n n S O2 SO4 doub 320 n n S O3 SO4 sing 321 n n S O4 SO4 sing 322 n n # _atom_sites.entry_id 1GBF _atom_sites.fract_transf_matrix[1][1] 0.015106 _atom_sites.fract_transf_matrix[1][2] 0.008721 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017443 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012472 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 A 1 1 1 SO4 SO4 . D 3 SO4 A 1 2 2 SO4 SO4 . E 4 HOH A 1 246 246 HOH HOH . E 4 HOH A 2 247 247 HOH HOH . E 4 HOH A 3 248 248 HOH HOH . E 4 HOH A 4 249 249 HOH HOH . E 4 HOH A 5 250 250 HOH HOH . E 4 HOH A 6 251 251 HOH HOH . E 4 HOH A 7 252 252 HOH HOH . E 4 HOH A 8 253 253 HOH HOH . E 4 HOH A 9 254 254 HOH HOH . E 4 HOH A 10 255 255 HOH HOH . E 4 HOH A 11 256 256 HOH HOH . E 4 HOH A 12 257 257 HOH HOH . E 4 HOH A 13 258 258 HOH HOH . E 4 HOH A 14 259 259 HOH HOH . E 4 HOH A 15 260 260 HOH HOH . E 4 HOH A 16 261 261 HOH HOH . E 4 HOH A 17 262 262 HOH HOH . E 4 HOH A 18 263 263 HOH HOH . E 4 HOH A 19 264 264 HOH HOH . E 4 HOH A 20 265 265 HOH HOH . E 4 HOH A 21 266 266 HOH HOH . E 4 HOH A 22 267 267 HOH HOH . E 4 HOH A 23 268 268 HOH HOH . E 4 HOH A 24 269 269 HOH HOH . E 4 HOH A 25 270 270 HOH HOH . E 4 HOH A 26 271 271 HOH HOH . E 4 HOH A 27 272 272 HOH HOH . E 4 HOH A 28 273 273 HOH HOH . E 4 HOH A 29 274 274 HOH HOH . E 4 HOH A 30 275 275 HOH HOH . E 4 HOH A 31 276 276 HOH HOH . E 4 HOH A 32 277 277 HOH HOH . E 4 HOH A 33 278 278 HOH HOH . E 4 HOH A 34 279 279 HOH HOH . E 4 HOH A 35 280 280 HOH HOH . E 4 HOH A 36 281 281 HOH HOH . E 4 HOH A 37 282 282 HOH HOH . E 4 HOH A 38 283 283 HOH HOH . E 4 HOH A 39 284 284 HOH HOH . E 4 HOH A 40 285 285 HOH HOH . E 4 HOH A 41 286 286 HOH HOH . E 4 HOH A 42 287 287 HOH HOH . E 4 HOH A 43 288 288 HOH HOH . E 4 HOH A 44 289 289 HOH HOH . E 4 HOH A 45 290 290 HOH HOH . E 4 HOH A 46 291 291 HOH HOH . E 4 HOH A 47 292 292 HOH HOH . E 4 HOH A 48 293 293 HOH HOH . E 4 HOH A 49 294 294 HOH HOH . E 4 HOH A 50 295 295 HOH HOH . E 4 HOH A 51 296 296 HOH HOH . E 4 HOH A 52 297 297 HOH HOH . E 4 HOH A 53 298 298 HOH HOH . E 4 HOH A 54 299 299 HOH HOH . E 4 HOH A 55 300 300 HOH HOH . E 4 HOH A 56 301 301 HOH HOH . E 4 HOH A 57 302 302 HOH HOH . E 4 HOH A 58 303 303 HOH HOH . E 4 HOH A 59 304 304 HOH HOH . E 4 HOH A 60 305 305 HOH HOH . E 4 HOH A 61 306 306 HOH HOH . E 4 HOH A 62 307 307 HOH HOH . E 4 HOH A 63 308 308 HOH HOH . E 4 HOH A 64 309 309 HOH HOH . E 4 HOH A 65 310 310 HOH HOH . E 4 HOH A 66 311 311 HOH HOH . E 4 HOH A 67 312 312 HOH HOH . E 4 HOH A 68 313 313 HOH HOH . E 4 HOH A 69 314 314 HOH HOH . E 4 HOH A 70 315 315 HOH HOH . E 4 HOH A 71 316 316 HOH HOH . E 4 HOH A 72 317 317 HOH HOH . E 4 HOH A 73 318 318 HOH HOH . E 4 HOH A 74 319 319 HOH HOH . E 4 HOH A 75 320 320 HOH HOH . E 4 HOH A 76 321 321 HOH HOH . E 4 HOH A 77 322 322 HOH HOH . E 4 HOH A 78 323 323 HOH HOH . E 4 HOH A 79 324 324 HOH HOH . E 4 HOH A 80 325 325 HOH HOH . E 4 HOH A 81 326 326 HOH HOH . E 4 HOH A 82 327 327 HOH HOH . E 4 HOH A 83 328 328 HOH HOH . E 4 HOH A 84 329 329 HOH HOH . E 4 HOH A 85 330 330 HOH HOH . E 4 HOH A 86 331 331 HOH HOH . E 4 HOH A 87 332 332 HOH HOH . E 4 HOH A 88 333 333 HOH HOH . E 4 HOH A 89 334 334 HOH HOH . E 4 HOH A 90 335 335 HOH HOH . E 4 HOH A 91 336 336 HOH HOH . E 4 HOH A 92 337 337 HOH HOH . E 4 HOH A 93 338 338 HOH HOH . E 4 HOH A 94 339 339 HOH HOH . E 4 HOH A 95 340 340 HOH HOH . E 4 HOH A 96 341 341 HOH HOH . E 4 HOH A 97 342 342 HOH HOH . E 4 HOH A 98 343 343 HOH HOH . E 4 HOH A 99 344 344 HOH HOH . E 4 HOH A 100 345 345 HOH HOH . E 4 HOH A 101 346 346 HOH HOH . E 4 HOH A 102 347 347 HOH HOH . E 4 HOH A 103 348 348 HOH HOH . E 4 HOH A 104 349 349 HOH HOH . E 4 HOH A 105 350 350 HOH HOH . E 4 HOH A 106 351 351 HOH HOH . E 4 HOH A 107 352 352 HOH HOH . E 4 HOH A 108 353 353 HOH HOH . E 4 HOH A 109 354 354 HOH HOH . E 4 HOH A 110 355 355 HOH HOH . E 4 HOH A 111 356 356 HOH HOH . E 4 HOH A 112 357 357 HOH HOH . E 4 HOH A 113 358 358 HOH HOH . E 4 HOH A 114 359 359 HOH HOH . E 4 HOH A 115 360 360 HOH HOH . E 4 HOH A 116 361 361 HOH HOH . E 4 HOH A 117 362 362 HOH HOH . E 4 HOH A 118 363 363 HOH HOH . E 4 HOH A 119 364 364 HOH HOH . E 4 HOH A 120 365 365 HOH HOH . E 4 HOH A 121 366 366 HOH HOH . E 4 HOH A 122 367 367 HOH HOH . E 4 HOH A 123 368 368 HOH HOH . E 4 HOH A 124 369 369 HOH HOH . E 4 HOH A 125 370 370 HOH HOH . E 4 HOH A 126 371 371 HOH HOH . E 4 HOH A 127 372 372 HOH HOH . E 4 HOH A 128 373 373 HOH HOH . E 4 HOH A 129 374 374 HOH HOH . E 4 HOH A 130 375 375 HOH HOH . E 4 HOH A 131 376 376 HOH HOH . E 4 HOH A 132 377 377 HOH HOH . E 4 HOH A 133 378 378 HOH HOH . E 4 HOH A 134 379 379 HOH HOH . E 4 HOH A 135 380 380 HOH HOH . E 4 HOH A 136 381 381 HOH HOH . E 4 HOH A 137 382 382 HOH HOH . E 4 HOH A 138 383 383 HOH HOH . E 4 HOH A 139 384 384 HOH HOH . E 4 HOH A 140 385 385 HOH HOH . E 4 HOH A 141 386 386 HOH HOH . E 4 HOH A 142 387 387 HOH HOH . E 4 HOH A 143 388 388 HOH HOH . E 4 HOH A 144 389 389 HOH HOH . E 4 HOH A 145 390 390 HOH HOH . E 4 HOH A 146 391 391 HOH HOH . E 4 HOH A 147 392 392 HOH HOH . E 4 HOH A 148 393 393 HOH HOH . E 4 HOH A 149 394 394 HOH HOH . E 4 HOH A 150 395 395 HOH HOH . E 4 HOH A 151 396 396 HOH HOH . E 4 HOH A 152 397 397 HOH HOH . E 4 HOH A 153 398 398 HOH HOH . E 4 HOH A 154 399 399 HOH HOH . E 4 HOH A 155 400 400 HOH HOH . E 4 HOH A 156 401 401 HOH HOH . E 4 HOH A 157 402 402 HOH HOH . E 4 HOH A 158 403 403 HOH HOH . E 4 HOH A 159 404 404 HOH HOH . E 4 HOH A 160 405 405 HOH HOH . E 4 HOH A 161 406 406 HOH HOH . E 4 HOH A 162 407 407 HOH HOH . E 4 HOH A 163 408 408 HOH HOH . E 4 HOH A 164 409 409 HOH HOH . E 4 HOH A 165 410 410 HOH HOH . F 4 HOH P 1 145 145 HOH HOH . F 4 HOH P 2 147 147 HOH HOH . F 4 HOH P 3 152 152 HOH HOH . F 4 HOH P 4 160 160 HOH HOH . F 4 HOH P 5 162 162 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . D 3 32.763 30.893 28.854 1 58.35 ? S SO4 2 A 1 HETATM 2 O O1 SO4 . . . D 3 33.366 31.055 30.136 1 58.19 ? O1 SO4 2 A 1 HETATM 3 O O2 SO4 . . . D 3 31.829 31.932 28.658 1 58.33 ? O2 SO4 2 A 1 HETATM 4 O O3 SO4 . . . D 3 33.716 30.84 27.801 1 58.93 ? O3 SO4 2 A 1 HETATM 5 O O4 SO4 . . . D 3 32.089 29.642 28.851 1 59.74 ? O4 SO4 2 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 5 #