data_1GBM # _model_server_result.job_id 7dsY5MElBQfO8wNlD0Zv5g _model_server_result.datetime_utc '2024-10-24 04:30:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1gbm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1}' # _entry.id 1GBM # _exptl.entry_id 1GBM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1GBM _cell.length_a 66.3 _cell.length_b 66.3 _cell.length_c 80.24 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1GBM _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 17 A CYS 42 1_555 A SG CYS 37 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 101 A CYS 137 1_555 A SG CYS 111 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? disulf ? disulf3 A SG CYS 137 A CYS 189 1_555 A SG CYS 170 A CYS 220 1_555 ? ? ? A ? ? ? ? ? ? ? ? 2.012 ? covale ? covale1 A OG SER 143 A SER 195 1_555 B B B2F 5 P B2F 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.406 ? covale ? covale2 B N B2F 5 P B2F 1 1_555 B C PRO 4 P PRO 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 330 n n S O2 SO4 doub 331 n n S O3 SO4 sing 332 n n S O4 SO4 sing 333 n n # _atom_sites.entry_id 1GBM _atom_sites.fract_transf_matrix[1][1] 0.015083 _atom_sites.fract_transf_matrix[1][2] 0.008708 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017416 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012463 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 A 1 1 1 SO4 SO4 . D 4 HOH A 1 246 2 HOH HOH . D 4 HOH A 2 247 3 HOH HOH . D 4 HOH A 3 248 4 HOH HOH . D 4 HOH A 4 249 5 HOH HOH . D 4 HOH A 5 250 6 HOH HOH . D 4 HOH A 6 251 7 HOH HOH . D 4 HOH A 7 252 8 HOH HOH . D 4 HOH A 8 253 9 HOH HOH . D 4 HOH A 9 254 10 HOH HOH . D 4 HOH A 10 255 11 HOH HOH . D 4 HOH A 11 256 12 HOH HOH . D 4 HOH A 12 257 13 HOH HOH . D 4 HOH A 13 258 14 HOH HOH . D 4 HOH A 14 259 15 HOH HOH . D 4 HOH A 15 260 16 HOH HOH . D 4 HOH A 16 261 17 HOH HOH . D 4 HOH A 17 262 18 HOH HOH . D 4 HOH A 18 263 19 HOH HOH . D 4 HOH A 19 264 20 HOH HOH . D 4 HOH A 20 265 21 HOH HOH . D 4 HOH A 21 266 22 HOH HOH . D 4 HOH A 22 267 23 HOH HOH . D 4 HOH A 23 268 24 HOH HOH . D 4 HOH A 24 269 25 HOH HOH . D 4 HOH A 25 270 26 HOH HOH . D 4 HOH A 26 271 27 HOH HOH . D 4 HOH A 27 272 28 HOH HOH . D 4 HOH A 28 273 29 HOH HOH . D 4 HOH A 29 274 30 HOH HOH . D 4 HOH A 30 275 31 HOH HOH . D 4 HOH A 31 276 32 HOH HOH . D 4 HOH A 32 277 33 HOH HOH . D 4 HOH A 33 278 34 HOH HOH . D 4 HOH A 34 279 35 HOH HOH . D 4 HOH A 35 280 36 HOH HOH . D 4 HOH A 36 281 37 HOH HOH . D 4 HOH A 37 282 38 HOH HOH . D 4 HOH A 38 283 39 HOH HOH . D 4 HOH A 39 284 40 HOH HOH . D 4 HOH A 40 285 41 HOH HOH . D 4 HOH A 41 286 42 HOH HOH . D 4 HOH A 42 287 43 HOH HOH . D 4 HOH A 43 288 44 HOH HOH . D 4 HOH A 44 289 45 HOH HOH . D 4 HOH A 45 290 46 HOH HOH . D 4 HOH A 46 291 47 HOH HOH . D 4 HOH A 47 292 48 HOH HOH . D 4 HOH A 48 293 49 HOH HOH . D 4 HOH A 49 294 50 HOH HOH . D 4 HOH A 50 295 51 HOH HOH . D 4 HOH A 51 296 52 HOH HOH . D 4 HOH A 52 297 53 HOH HOH . D 4 HOH A 53 298 55 HOH HOH . D 4 HOH A 54 299 56 HOH HOH . D 4 HOH A 55 300 57 HOH HOH . D 4 HOH A 56 301 58 HOH HOH . D 4 HOH A 57 302 59 HOH HOH . D 4 HOH A 58 303 60 HOH HOH . D 4 HOH A 59 304 61 HOH HOH . D 4 HOH A 60 305 62 HOH HOH . D 4 HOH A 61 306 63 HOH HOH . D 4 HOH A 62 307 64 HOH HOH . D 4 HOH A 63 308 65 HOH HOH . D 4 HOH A 64 309 66 HOH HOH . D 4 HOH A 65 310 67 HOH HOH . D 4 HOH A 66 311 68 HOH HOH . D 4 HOH A 67 312 69 HOH HOH . D 4 HOH A 68 313 70 HOH HOH . D 4 HOH A 69 314 71 HOH HOH . D 4 HOH A 70 315 72 HOH HOH . D 4 HOH A 71 316 73 HOH HOH . D 4 HOH A 72 317 74 HOH HOH . D 4 HOH A 73 318 75 HOH HOH . D 4 HOH A 74 319 76 HOH HOH . D 4 HOH A 75 320 77 HOH HOH . D 4 HOH A 76 321 78 HOH HOH . D 4 HOH A 77 322 79 HOH HOH . D 4 HOH A 78 323 80 HOH HOH . D 4 HOH A 79 324 81 HOH HOH . D 4 HOH A 80 325 82 HOH HOH . D 4 HOH A 81 326 83 HOH HOH . D 4 HOH A 82 327 84 HOH HOH . D 4 HOH A 83 328 85 HOH HOH . D 4 HOH A 84 329 86 HOH HOH . D 4 HOH A 85 330 88 HOH HOH . D 4 HOH A 86 331 89 HOH HOH . D 4 HOH A 87 332 91 HOH HOH . D 4 HOH A 88 333 92 HOH HOH . D 4 HOH A 89 334 93 HOH HOH . D 4 HOH A 90 335 94 HOH HOH . D 4 HOH A 91 336 95 HOH HOH . D 4 HOH A 92 337 96 HOH HOH . D 4 HOH A 93 338 97 HOH HOH . D 4 HOH A 94 339 98 HOH HOH . D 4 HOH A 95 340 99 HOH HOH . D 4 HOH A 96 341 100 HOH HOH . D 4 HOH A 97 342 101 HOH HOH . D 4 HOH A 98 343 102 HOH HOH . D 4 HOH A 99 344 105 HOH HOH . D 4 HOH A 100 345 106 HOH HOH . D 4 HOH A 101 346 107 HOH HOH . D 4 HOH A 102 347 108 HOH HOH . D 4 HOH A 103 348 109 HOH HOH . D 4 HOH A 104 349 110 HOH HOH . D 4 HOH A 105 350 111 HOH HOH . D 4 HOH A 106 351 112 HOH HOH . D 4 HOH A 107 352 113 HOH HOH . D 4 HOH A 108 353 114 HOH HOH . D 4 HOH A 109 354 115 HOH HOH . D 4 HOH A 110 355 116 HOH HOH . D 4 HOH A 111 356 117 HOH HOH . D 4 HOH A 112 357 118 HOH HOH . D 4 HOH A 113 358 119 HOH HOH . D 4 HOH A 114 359 120 HOH HOH . D 4 HOH A 115 360 121 HOH HOH . D 4 HOH A 116 361 122 HOH HOH . D 4 HOH A 117 362 123 HOH HOH . D 4 HOH A 118 363 124 HOH HOH . D 4 HOH A 119 364 125 HOH HOH . D 4 HOH A 120 365 126 HOH HOH . D 4 HOH A 121 366 127 HOH HOH . D 4 HOH A 122 367 128 HOH HOH . D 4 HOH A 123 368 129 HOH HOH . D 4 HOH A 124 369 130 HOH HOH . D 4 HOH A 125 370 131 HOH HOH . D 4 HOH A 126 371 132 HOH HOH . D 4 HOH A 127 372 133 HOH HOH . D 4 HOH A 128 373 134 HOH HOH . D 4 HOH A 129 374 135 HOH HOH . D 4 HOH A 130 375 136 HOH HOH . D 4 HOH A 131 376 137 HOH HOH . D 4 HOH A 132 377 138 HOH HOH . D 4 HOH A 133 378 139 HOH HOH . D 4 HOH A 134 379 140 HOH HOH . D 4 HOH A 135 380 141 HOH HOH . D 4 HOH A 136 381 142 HOH HOH . D 4 HOH A 137 382 143 HOH HOH . E 4 HOH P 1 54 54 HOH HOH . E 4 HOH P 2 87 87 HOH HOH . E 4 HOH P 3 90 90 HOH HOH . E 4 HOH P 4 103 103 HOH HOH . E 4 HOH P 5 104 104 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . C 3 32.84 31.067 28.901 1 33.96 ? S SO4 1 A 1 HETATM 2 O O1 SO4 . . . C 3 33.468 31.273 30.184 1 37.16 ? O1 SO4 1 A 1 HETATM 3 O O2 SO4 . . . C 3 31.9 32.116 28.693 1 33.43 ? O2 SO4 1 A 1 HETATM 4 O O3 SO4 . . . C 3 33.787 30.983 27.827 1 34.58 ? O3 SO4 1 A 1 HETATM 5 O O4 SO4 . . . C 3 32.142 29.818 28.984 1 44.03 ? O4 SO4 1 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 5 #