data_1GBT # _model_server_result.job_id HAe85Q87jauQIkh9sOq1vA _model_server_result.datetime_utc '2024-11-29 03:04:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1gbt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":704}' # _entry.id 1GBT # _exptl.entry_id 1GBT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 179.176 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-carbamimidamidobenzoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1GBT _cell.length_a 63.74 _cell.length_b 63.54 _cell.length_c 68.93 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1GBT _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 137 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? disulf ? disulf2 A SG CYS 25 A CYS 42 1_555 A SG CYS 41 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf3 A SG CYS 109 A CYS 128 1_555 A SG CYS 210 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? disulf ? disulf4 A SG CYS 116 A CYS 136 1_555 A SG CYS 183 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 A SG CYS 148 A CYS 168 1_555 A SG CYS 162 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? disulf ? disulf6 A SG CYS 173 A CYS 191 1_555 A SG CYS 197 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? covale ? covale1 A OG SER 177 A SER 195 1_555 E C6 GBS . A GBS 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.24 ? metalc ? metalc1 A OE1 GLU 52 A GLU 70 1_555 B CA CA . A CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc2 A O ASN 54 A ASN 72 1_555 B CA CA . A CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc3 A O VAL 57 A VAL 75 1_555 B CA CA . A CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc4 A OE2 GLU 62 A GLU 80 1_555 B CA CA . A CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc5 F O HOH . A HOH 274 1_555 B CA CA . A CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc6 F O HOH . A HOH 275 1_555 B CA CA . A CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? # _chem_comp.formula 'C8 H9 N3 O2' _chem_comp.formula_weight 179.176 _chem_comp.id GBS _chem_comp.mon_nstd_flag . _chem_comp.name '4-carbamimidamidobenzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Nafamostat, bound form' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C6 O GBS doub 83 n n C6 C5 GBS sing 84 n n C5 C GBS doub 85 n y C5 C4 GBS sing 86 n y C C1 GBS sing 87 n y C4 C3 GBS doub 88 n y C1 C2 GBS doub 89 n y C3 C2 GBS sing 90 n y C2 N2 GBS sing 91 n n N2 C18 GBS sing 92 n n C18 N4 GBS doub 93 n n C18 N3 GBS sing 94 n n C6 O1 GBS sing 95 n n C3 H1 GBS sing 96 n n C4 H2 GBS sing 97 n n C1 H3 GBS sing 98 n n N4 H4 GBS sing 99 n n N2 H5 GBS sing 100 n n N3 H6 GBS sing 101 n n N3 H7 GBS sing 102 n n C H8 GBS sing 103 n n O1 H9 GBS sing 104 n n # _atom_sites.entry_id 1GBT _atom_sites.fract_transf_matrix[1][1] 0.015689 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015738 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014507 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 701 701 CA CA . C 3 SO4 A 1 702 702 SO4 SO4 . D 3 SO4 A 1 703 703 SO4 SO4 . E 4 GBS A 1 704 195 GBS GBS . F 5 HOH A 1 246 246 HOH HOH . F 5 HOH A 2 247 247 HOH HOH . F 5 HOH A 3 250 250 HOH HOH . F 5 HOH A 4 251 251 HOH HOH . F 5 HOH A 5 252 252 HOH HOH . F 5 HOH A 6 253 253 HOH HOH . F 5 HOH A 7 254 254 HOH HOH . F 5 HOH A 8 255 255 HOH HOH . F 5 HOH A 9 256 256 HOH HOH . F 5 HOH A 10 257 257 HOH HOH . F 5 HOH A 11 258 258 HOH HOH . F 5 HOH A 12 259 259 HOH HOH . F 5 HOH A 13 260 260 HOH HOH . F 5 HOH A 14 261 261 HOH HOH . F 5 HOH A 15 262 262 HOH HOH . F 5 HOH A 16 264 264 HOH HOH . F 5 HOH A 17 265 265 HOH HOH . F 5 HOH A 18 266 266 HOH HOH . F 5 HOH A 19 267 267 HOH HOH . F 5 HOH A 20 268 268 HOH HOH . F 5 HOH A 21 269 269 HOH HOH . F 5 HOH A 22 270 270 HOH HOH . F 5 HOH A 23 271 271 HOH HOH . F 5 HOH A 24 272 272 HOH HOH . F 5 HOH A 25 273 273 HOH HOH . F 5 HOH A 26 274 274 HOH HOH . F 5 HOH A 27 275 275 HOH HOH . F 5 HOH A 28 276 276 HOH HOH . F 5 HOH A 29 277 277 HOH HOH . F 5 HOH A 30 278 278 HOH HOH . F 5 HOH A 31 279 279 HOH HOH . F 5 HOH A 32 280 280 HOH HOH . F 5 HOH A 33 281 281 HOH HOH . F 5 HOH A 34 283 283 HOH HOH . F 5 HOH A 35 284 284 HOH HOH . F 5 HOH A 36 285 285 HOH HOH . F 5 HOH A 37 287 287 HOH HOH . F 5 HOH A 38 288 288 HOH HOH . F 5 HOH A 39 289 289 HOH HOH . F 5 HOH A 40 290 290 HOH HOH . F 5 HOH A 41 291 291 HOH HOH . F 5 HOH A 42 292 292 HOH HOH . F 5 HOH A 43 293 293 HOH HOH . F 5 HOH A 44 294 294 HOH HOH . F 5 HOH A 45 295 295 HOH HOH . F 5 HOH A 46 296 296 HOH HOH . F 5 HOH A 47 297 297 HOH HOH . F 5 HOH A 48 298 298 HOH HOH . F 5 HOH A 49 299 299 HOH HOH . F 5 HOH A 50 300 300 HOH HOH . F 5 HOH A 51 302 302 HOH HOH . F 5 HOH A 52 304 304 HOH HOH . F 5 HOH A 53 306 306 HOH HOH . F 5 HOH A 54 308 308 HOH HOH . F 5 HOH A 55 309 309 HOH HOH . F 5 HOH A 56 310 310 HOH HOH . F 5 HOH A 57 311 311 HOH HOH . F 5 HOH A 58 312 312 HOH HOH . F 5 HOH A 59 313 313 HOH HOH . F 5 HOH A 60 315 315 HOH HOH . F 5 HOH A 61 316 316 HOH HOH . F 5 HOH A 62 317 317 HOH HOH . F 5 HOH A 63 318 318 HOH HOH . F 5 HOH A 64 319 319 HOH HOH . F 5 HOH A 65 320 320 HOH HOH . F 5 HOH A 66 321 321 HOH HOH . F 5 HOH A 67 322 322 HOH HOH . F 5 HOH A 68 323 323 HOH HOH . F 5 HOH A 69 324 324 HOH HOH . F 5 HOH A 70 325 325 HOH HOH . F 5 HOH A 71 326 326 HOH HOH . F 5 HOH A 72 327 327 HOH HOH . F 5 HOH A 73 328 328 HOH HOH . F 5 HOH A 74 329 329 HOH HOH . F 5 HOH A 75 330 330 HOH HOH . F 5 HOH A 76 331 331 HOH HOH . F 5 HOH A 77 332 332 HOH HOH . F 5 HOH A 78 333 333 HOH HOH . F 5 HOH A 79 334 334 HOH HOH . F 5 HOH A 80 335 335 HOH HOH . F 5 HOH A 81 336 336 HOH HOH . F 5 HOH A 82 337 337 HOH HOH . F 5 HOH A 83 338 338 HOH HOH . F 5 HOH A 84 339 339 HOH HOH . F 5 HOH A 85 340 340 HOH HOH . F 5 HOH A 86 341 341 HOH HOH . F 5 HOH A 87 342 342 HOH HOH . F 5 HOH A 88 343 343 HOH HOH . F 5 HOH A 89 344 344 HOH HOH . F 5 HOH A 90 345 345 HOH HOH . F 5 HOH A 91 347 347 HOH HOH . F 5 HOH A 92 348 348 HOH HOH . F 5 HOH A 93 349 349 HOH HOH . F 5 HOH A 94 353 353 HOH HOH . F 5 HOH A 95 355 355 HOH HOH . F 5 HOH A 96 356 356 HOH HOH . F 5 HOH A 97 357 357 HOH HOH . F 5 HOH A 98 358 358 HOH HOH . F 5 HOH A 99 359 359 HOH HOH . F 5 HOH A 100 360 360 HOH HOH . F 5 HOH A 101 361 361 HOH HOH . F 5 HOH A 102 362 362 HOH HOH . F 5 HOH A 103 363 363 HOH HOH . F 5 HOH A 104 364 364 HOH HOH . F 5 HOH A 105 365 365 HOH HOH . F 5 HOH A 106 366 366 HOH HOH . F 5 HOH A 107 367 367 HOH HOH . F 5 HOH A 108 801 801 HOH HOH . F 5 HOH A 109 802 802 HOH HOH . F 5 HOH A 110 803 803 HOH HOH . F 5 HOH A 111 804 804 HOH HOH . F 5 HOH A 112 805 805 HOH HOH . F 5 HOH A 113 806 806 HOH HOH . F 5 HOH A 114 807 807 HOH HOH . F 5 HOH A 115 808 808 HOH HOH . F 5 HOH A 116 901 901 HOH HOH . F 5 HOH A 117 902 902 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 GBS . . . E 4 43.692 -3.093 26.557 0.75 9.2 ? C2 GBS 704 A 1 HETATM 2 C C3 GBS . . . E 4 44.159 -3.285 27.851 0.75 9.42 ? C3 GBS 704 A 1 HETATM 3 C C4 GBS . . . E 4 44.464 -2.221 28.683 0.78 9.59 ? C4 GBS 704 A 1 HETATM 4 C C6 GBS . . . E 4 44.773 0.302 29.019 0.72 9.7 ? C6 GBS 704 A 1 HETATM 5 C C1 GBS . . . E 4 43.731 -1.815 26.004 1 8.04 ? C1 GBS 704 A 1 HETATM 6 N N4 GBS . . . E 4 43.359 -5.575 23.983 1 13.07 ? N4 GBS 704 A 1 HETATM 7 C C5 GBS . . . E 4 44.401 -0.91 28.186 0.84 9.18 ? C5 GBS 704 A 1 HETATM 8 C C18 GBS . . . E 4 43.751 -4.461 24.579 1 13.36 ? C18 GBS 704 A 1 HETATM 9 O O GBS . . . E 4 45.445 0.082 30.108 0.6 10.72 ? O GBS 704 A 1 HETATM 10 N N2 GBS . . . E 4 43.338 -4.216 25.817 1 10.93 ? N2 GBS 704 A 1 HETATM 11 N N3 GBS . . . E 4 44.53 -3.637 23.89 0.8 14.93 ? N3 GBS 704 A 1 HETATM 12 C C GBS . . . E 4 44.011 -0.726 26.847 1 7.84 ? C GBS 704 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #