data_1GC3 # _model_server_result.job_id vBWaN6yPeMEm9WljPk7Glw _model_server_result.datetime_utc '2024-11-02 05:26:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1gc3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":2914}' # _entry.id 1GC3 # _exptl.entry_id 1GC3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 204.225 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description TRYPTOPHAN _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.53 _cell.angle_gamma 90 _cell.entry_id 1GC3 _cell.length_a 81.5 _cell.length_b 98.4 _cell.length_c 187 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1GC3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,I,J,K,L 1 1 C,D,M,N,O,P 2 1 E,F,Q,R,S,T 3 1 G,H,U,V,W,X 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 J N N ? 2 M N N ? 2 O N N ? 2 Q N N ? 2 R N N ? 2 U N N ? 2 W N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 K C4A PLP . A PLP 413 1_555 I N TRP . A TRP 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.485 ? covale ? covale2 J N TRP . A TRP 914 1_555 L C4A PLP . B PLP 913 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.503 ? covale ? covale3 N C4A PLP . C PLP 1413 1_555 M N TRP . C TRP 1414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? covale ? covale4 P C4A PLP . D PLP 1913 1_555 O N TRP . D TRP 1914 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.581 ? covale ? covale5 S C4A PLP . E PLP 2413 1_555 Q N TRP . E TRP 2414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.418 ? covale ? covale6 R N TRP . E TRP 2914 1_555 T C4A PLP . F PLP 2913 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.496 ? covale ? covale7 V C4A PLP . G PLP 3413 1_555 U N TRP . G TRP 3414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.575 ? covale ? covale8 X C4A PLP . H PLP 3913 1_555 W N TRP . H TRP 3914 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.538 ? # _chem_comp.formula 'C11 H12 N2 O2' _chem_comp.formula_weight 204.225 _chem_comp.id TRP _chem_comp.mon_nstd_flag y _chem_comp.name TRYPTOPHAN _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA TRP sing 330 n n N H TRP sing 331 n n N H2 TRP sing 332 n n CA C TRP sing 333 n n CA CB TRP sing 334 n n CA HA TRP sing 335 n n C O TRP doub 336 n n C OXT TRP sing 337 n n CB CG TRP sing 338 n n CB HB2 TRP sing 339 n n CB HB3 TRP sing 340 n n CG CD1 TRP doub 341 n y CG CD2 TRP sing 342 n y CD1 NE1 TRP sing 343 n y CD1 HD1 TRP sing 344 n n CD2 CE2 TRP doub 345 n y CD2 CE3 TRP sing 346 n y NE1 CE2 TRP sing 347 n y NE1 HE1 TRP sing 348 n n CE2 CZ2 TRP sing 349 n y CE3 CZ3 TRP doub 350 n y CE3 HE3 TRP sing 351 n n CZ2 CH2 TRP doub 352 n y CZ2 HZ2 TRP sing 353 n n CZ3 CH2 TRP sing 354 n y CZ3 HZ3 TRP sing 355 n n CH2 HH2 TRP sing 356 n n OXT HXT TRP sing 357 n n # _atom_sites.entry_id 1GC3 _atom_sites.fract_transf_matrix[1][1] 0.01227 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000328 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010163 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00535 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 TRP A 1 414 414 TRP TRP . J 2 TRP A 1 914 914 TRP TRP . K 3 PLP A 1 413 413 PLP PLP . L 3 PLP B 1 913 913 PLP PLP . M 2 TRP C 1 1414 1414 TRP TRP . N 3 PLP C 1 1413 1413 PLP PLP . O 2 TRP D 1 1914 1914 TRP TRP . P 3 PLP D 1 1913 1913 PLP PLP . Q 2 TRP E 1 2414 2414 TRP TRP . R 2 TRP E 1 2914 2914 TRP TRP . S 3 PLP E 1 2413 2413 PLP PLP . T 3 PLP F 1 2913 2913 PLP PLP . U 2 TRP G 1 3414 3414 TRP TRP . V 3 PLP G 1 3413 3413 PLP PLP . W 2 TRP H 1 3914 3914 TRP TRP . X 3 PLP H 1 3913 3913 PLP PLP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N TRP . . . R 2 10.548 51.139 149.579 1 33.16 ? N TRP 2914 E 1 HETATM 2 C CA TRP . . . R 2 10.318 49.73 149.803 1 38.66 ? CA TRP 2914 E 1 HETATM 3 C C TRP . . . R 2 9.067 48.862 150.175 1 38.82 ? C TRP 2914 E 1 HETATM 4 O O TRP . . . R 2 8.024 49.338 150.73 1 29.02 ? O TRP 2914 E 1 HETATM 5 C CB TRP . . . R 2 11.557 49.245 150.55 1 46.16 ? CB TRP 2914 E 1 HETATM 6 C CG TRP . . . R 2 11.759 47.877 150.548 1 61.83 ? CG TRP 2914 E 1 HETATM 7 C CD1 TRP . . . R 2 11.262 47.058 151.36 1 66.2 ? CD1 TRP 2914 E 1 HETATM 8 C CD2 TRP . . . R 2 12.6 47.144 149.6 1 70.65 ? CD2 TRP 2914 E 1 HETATM 9 N NE1 TRP . . . R 2 11.723 45.752 151.064 1 72.13 ? NE1 TRP 2914 E 1 HETATM 10 C CE2 TRP . . . R 2 12.559 45.801 149.962 1 70.38 ? CE2 TRP 2914 E 1 HETATM 11 C CE3 TRP . . . R 2 13.436 47.571 148.535 1 76.55 ? CE3 TRP 2914 E 1 HETATM 12 C CZ2 TRP . . . R 2 13.347 44.794 149.164 1 71.43 ? CZ2 TRP 2914 E 1 HETATM 13 C CZ3 TRP . . . R 2 14.171 46.694 147.762 1 77.05 ? CZ3 TRP 2914 E 1 HETATM 14 C CH2 TRP . . . R 2 14.181 45.322 148.064 1 73.3 ? CH2 TRP 2914 E 1 HETATM 15 O OXT TRP . . . R 2 8.978 47.684 149.613 1 46.57 ? OXT TRP 2914 E 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 15 #