data_1GCA # _model_server_result.job_id LDXzCpTjwYIvpuzB7LXpFA _model_server_result.datetime_utc '2025-01-02 19:38:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1gca # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":350}' # _entry.id 1GCA # _exptl.entry_id 1GCA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description beta-D-galactopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 123.18 _cell.angle_gamma 90 _cell.entry_id 1GCA _cell.length_a 119.57 _cell.length_b 37.39 _cell.length_c 80.14 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1GCA _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 134 A ASP 134 1_555 C CA CA . A CA 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc2 A OD1 ASN 136 A ASN 136 1_555 C CA CA . A CA 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc3 A OD1 ASP 138 A ASP 138 1_555 C CA CA . A CA 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc4 A O LYS 140 A LYS 140 1_555 C CA CA . A CA 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc5 A OE1 GLN 142 A GLN 142 1_555 C CA CA . A CA 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc6 A OE2 GLU 205 A GLU 205 1_555 C CA CA . A CA 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? metalc ? metalc7 A OE1 GLU 205 A GLU 205 1_555 C CA CA . A CA 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id GAL _chem_comp.mon_nstd_flag . _chem_comp.name beta-D-galactopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms beta-D-galactose;D-galactose;galactose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 GAL sing 70 n n C1 O1 GAL sing 71 n n C1 O5 GAL sing 72 n n C1 H1 GAL sing 73 n n C2 C3 GAL sing 74 n n C2 O2 GAL sing 75 n n C2 H2 GAL sing 76 n n C3 C4 GAL sing 77 n n C3 O3 GAL sing 78 n n C3 H3 GAL sing 79 n n C4 C5 GAL sing 80 n n C4 O4 GAL sing 81 n n C4 H4 GAL sing 82 n n C5 C6 GAL sing 83 n n C5 O5 GAL sing 84 n n C5 H5 GAL sing 85 n n C6 O6 GAL sing 86 n n C6 H61 GAL sing 87 n n C6 H62 GAL sing 88 n n O1 HO1 GAL sing 89 n n O2 HO2 GAL sing 90 n n O3 HO3 GAL sing 91 n n O4 HO4 GAL sing 92 n n O6 HO6 GAL sing 93 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version GAL DGalpb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 GAL b-D-galactopyranose 'COMMON NAME' GMML 1 GAL b-D-Galp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 GAL Gal 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1GCA _atom_sites.fract_transf_matrix[1][1] 0.008363 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005469 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026745 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014909 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GAL A 1 350 350 GAL GAL . C 3 CA A 1 351 1 CA CA . D 4 HOH A 1 352 2 HOH HOH . D 4 HOH A 2 353 3 HOH HOH . D 4 HOH A 3 354 4 HOH HOH . D 4 HOH A 4 355 5 HOH HOH . D 4 HOH A 5 356 6 HOH HOH . D 4 HOH A 6 357 7 HOH HOH . D 4 HOH A 7 358 8 HOH HOH . D 4 HOH A 8 359 9 HOH HOH . D 4 HOH A 9 360 10 HOH HOH . D 4 HOH A 10 361 11 HOH HOH . D 4 HOH A 11 362 12 HOH HOH . D 4 HOH A 12 363 13 HOH HOH . D 4 HOH A 13 364 14 HOH HOH . D 4 HOH A 14 365 15 HOH HOH . D 4 HOH A 15 366 16 HOH HOH . D 4 HOH A 16 367 17 HOH HOH . D 4 HOH A 17 368 18 HOH HOH . D 4 HOH A 18 369 19 HOH HOH . D 4 HOH A 19 370 20 HOH HOH . D 4 HOH A 20 371 21 HOH HOH . D 4 HOH A 21 372 22 HOH HOH . D 4 HOH A 22 373 23 HOH HOH . D 4 HOH A 23 374 24 HOH HOH . D 4 HOH A 24 375 25 HOH HOH . D 4 HOH A 25 376 26 HOH HOH . D 4 HOH A 26 377 27 HOH HOH . D 4 HOH A 27 378 28 HOH HOH . D 4 HOH A 28 379 29 HOH HOH . D 4 HOH A 29 380 30 HOH HOH . D 4 HOH A 30 381 31 HOH HOH . D 4 HOH A 31 382 32 HOH HOH . D 4 HOH A 32 383 33 HOH HOH . D 4 HOH A 33 384 34 HOH HOH . D 4 HOH A 34 385 35 HOH HOH . D 4 HOH A 35 386 36 HOH HOH . D 4 HOH A 36 387 37 HOH HOH . D 4 HOH A 37 388 38 HOH HOH . D 4 HOH A 38 389 39 HOH HOH . D 4 HOH A 39 390 40 HOH HOH . D 4 HOH A 40 391 41 HOH HOH . D 4 HOH A 41 392 42 HOH HOH . D 4 HOH A 42 393 43 HOH HOH . D 4 HOH A 43 394 44 HOH HOH . D 4 HOH A 44 395 45 HOH HOH . D 4 HOH A 45 396 46 HOH HOH . D 4 HOH A 46 397 47 HOH HOH . D 4 HOH A 47 398 48 HOH HOH . D 4 HOH A 48 399 49 HOH HOH . D 4 HOH A 49 400 50 HOH HOH . D 4 HOH A 50 401 51 HOH HOH . D 4 HOH A 51 402 52 HOH HOH . D 4 HOH A 52 403 53 HOH HOH . D 4 HOH A 53 404 54 HOH HOH . D 4 HOH A 54 405 55 HOH HOH . D 4 HOH A 55 406 56 HOH HOH . D 4 HOH A 56 407 57 HOH HOH . D 4 HOH A 57 408 58 HOH HOH . D 4 HOH A 58 409 59 HOH HOH . D 4 HOH A 59 410 60 HOH HOH . D 4 HOH A 60 411 61 HOH HOH . D 4 HOH A 61 412 62 HOH HOH . D 4 HOH A 62 413 63 HOH HOH . D 4 HOH A 63 414 64 HOH HOH . D 4 HOH A 64 415 65 HOH HOH . D 4 HOH A 65 416 66 HOH HOH . D 4 HOH A 66 417 67 HOH HOH . D 4 HOH A 67 418 68 HOH HOH . D 4 HOH A 68 419 69 HOH HOH . D 4 HOH A 69 420 70 HOH HOH . D 4 HOH A 70 421 71 HOH HOH . D 4 HOH A 71 422 72 HOH HOH . D 4 HOH A 72 423 73 HOH HOH . D 4 HOH A 73 424 74 HOH HOH . D 4 HOH A 74 425 75 HOH HOH . D 4 HOH A 75 426 76 HOH HOH . D 4 HOH A 76 427 77 HOH HOH . D 4 HOH A 77 428 78 HOH HOH . D 4 HOH A 78 429 79 HOH HOH . D 4 HOH A 79 430 80 HOH HOH . D 4 HOH A 80 431 81 HOH HOH . D 4 HOH A 81 432 82 HOH HOH . D 4 HOH A 82 433 83 HOH HOH . D 4 HOH A 83 434 84 HOH HOH . D 4 HOH A 84 435 85 HOH HOH . D 4 HOH A 85 436 86 HOH HOH . D 4 HOH A 86 437 87 HOH HOH . D 4 HOH A 87 438 88 HOH HOH . D 4 HOH A 88 439 89 HOH HOH . D 4 HOH A 89 440 90 HOH HOH . D 4 HOH A 90 441 91 HOH HOH . D 4 HOH A 91 442 92 HOH HOH . D 4 HOH A 92 443 93 HOH HOH . D 4 HOH A 93 444 94 HOH HOH . D 4 HOH A 94 445 95 HOH HOH . D 4 HOH A 95 446 96 HOH HOH . D 4 HOH A 96 447 97 HOH HOH . D 4 HOH A 97 448 98 HOH HOH . D 4 HOH A 98 449 99 HOH HOH . D 4 HOH A 99 450 100 HOH HOH . D 4 HOH A 100 451 101 HOH HOH . D 4 HOH A 101 452 102 HOH HOH . D 4 HOH A 102 453 103 HOH HOH . D 4 HOH A 103 454 104 HOH HOH . D 4 HOH A 104 455 105 HOH HOH . D 4 HOH A 105 456 106 HOH HOH . D 4 HOH A 106 457 107 HOH HOH . D 4 HOH A 107 458 108 HOH HOH . D 4 HOH A 108 459 109 HOH HOH . D 4 HOH A 109 460 110 HOH HOH . D 4 HOH A 110 461 111 HOH HOH . D 4 HOH A 111 462 112 HOH HOH . D 4 HOH A 112 463 113 HOH HOH . D 4 HOH A 113 464 114 HOH HOH . D 4 HOH A 114 465 115 HOH HOH . D 4 HOH A 115 466 116 HOH HOH . D 4 HOH A 116 467 117 HOH HOH . D 4 HOH A 117 468 118 HOH HOH . D 4 HOH A 118 469 119 HOH HOH . D 4 HOH A 119 470 120 HOH HOH . D 4 HOH A 120 471 121 HOH HOH . D 4 HOH A 121 472 122 HOH HOH . D 4 HOH A 122 473 123 HOH HOH . D 4 HOH A 123 474 124 HOH HOH . D 4 HOH A 124 475 125 HOH HOH . D 4 HOH A 125 476 126 HOH HOH . D 4 HOH A 126 477 127 HOH HOH . D 4 HOH A 127 478 128 HOH HOH . D 4 HOH A 128 479 129 HOH HOH . D 4 HOH A 129 480 130 HOH HOH . D 4 HOH A 130 481 131 HOH HOH . D 4 HOH A 131 482 132 HOH HOH . D 4 HOH A 132 483 133 HOH HOH . D 4 HOH A 133 484 134 HOH HOH . D 4 HOH A 134 485 135 HOH HOH . D 4 HOH A 135 486 136 HOH HOH . D 4 HOH A 136 487 137 HOH HOH . D 4 HOH A 137 488 138 HOH HOH . D 4 HOH A 138 489 139 HOH HOH . D 4 HOH A 139 490 140 HOH HOH . D 4 HOH A 140 491 141 HOH HOH . D 4 HOH A 141 492 142 HOH HOH . D 4 HOH A 142 493 143 HOH HOH . D 4 HOH A 143 494 144 HOH HOH . D 4 HOH A 144 495 145 HOH HOH . D 4 HOH A 145 496 146 HOH HOH . D 4 HOH A 146 497 147 HOH HOH . D 4 HOH A 147 498 148 HOH HOH . D 4 HOH A 148 499 149 HOH HOH . D 4 HOH A 149 500 150 HOH HOH . D 4 HOH A 150 501 151 HOH HOH . D 4 HOH A 151 502 152 HOH HOH . D 4 HOH A 152 503 153 HOH HOH . D 4 HOH A 153 504 154 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GAL . . . B 2 82.506 28.904 85.2 1 9.1 ? C1 GAL 350 A 1 HETATM 2 C C2 GAL . . . B 2 81.693 27.942 86.069 1 9.56 ? C2 GAL 350 A 1 HETATM 3 C C3 GAL . . . B 2 81.945 28.277 87.523 1 10.15 ? C3 GAL 350 A 1 HETATM 4 C C4 GAL . . . B 2 83.467 28.286 87.883 1 8.7 ? C4 GAL 350 A 1 HETATM 5 C C5 GAL . . . B 2 84.257 29.171 86.875 1 10.84 ? C5 GAL 350 A 1 HETATM 6 C C6 GAL . . . B 2 85.792 29.016 87.029 1 10.05 ? C6 GAL 350 A 1 HETATM 7 O O1 GAL . . . B 2 82.3 28.613 83.869 1 11.15 ? O1 GAL 350 A 1 HETATM 8 O O2 GAL . . . B 2 80.31 28.07 85.767 1 9.41 ? O2 GAL 350 A 1 HETATM 9 O O3 GAL . . . B 2 81.283 27.34 88.295 1 8.19 ? O3 GAL 350 A 1 HETATM 10 O O4 GAL . . . B 2 83.918 26.961 87.812 1 12.94 ? O4 GAL 350 A 1 HETATM 11 O O5 GAL . . . B 2 83.894 28.788 85.516 1 8.85 ? O5 GAL 350 A 1 HETATM 12 O O6 GAL . . . B 2 86.457 29.963 86.205 1 11.23 ? O6 GAL 350 A 1 HETATM 13 H H1 GAL . . . B 2 82.175 29.943 85.374 1 0 ? H1 GAL 350 A 1 HETATM 14 H H2 GAL . . . B 2 82.018 26.906 85.863 1 0 ? H2 GAL 350 A 1 HETATM 15 H H3 GAL . . . B 2 81.516 29.265 87.727 1 0 ? H3 GAL 350 A 1 HETATM 16 H H4 GAL . . . B 2 83.594 28.679 88.904 1 0 ? H4 GAL 350 A 1 HETATM 17 H H5 GAL . . . B 2 83.99 30.225 87.033 1 0 ? H5 GAL 350 A 1 HETATM 18 H H61 GAL . . . B 2 86.116 28.001 86.778 1 0 ? H61 GAL 350 A 1 HETATM 19 H H62 GAL . . . B 2 86.052 29.212 88.076 1 0 ? H62 GAL 350 A 1 HETATM 20 H HO1 GAL . . . B 2 82.821 29.204 83.337 1 0 ? HO1 GAL 350 A 1 HETATM 21 H HO2 GAL . . . B 2 79.873 27.175 85.622 1 0 ? HO2 GAL 350 A 1 HETATM 22 H HO3 GAL . . . B 2 80.374 27.289 88.007 1 0 ? HO3 GAL 350 A 1 HETATM 23 H HO4 GAL . . . B 2 84.847 26.947 88.03 1 0 ? HO4 GAL 350 A 1 HETATM 24 H HO6 GAL . . . B 2 87.025 29.525 85.591 1 0 ? HO6 GAL 350 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 24 #