data_1GCW # _model_server_result.job_id gOfENdDNtq2CkLtvCl3IHA _model_server_result.datetime_utc '2025-07-19 20:15:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1gcw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":141}' # _entry.id 1GCW # _exptl.entry_id 1GCW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1GCW _cell.length_a 66.7 _cell.length_b 80.45 _cell.length_c 114.83 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1GCW _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N ? 3 I N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 87 A HIS 87 1_555 E FE HEM . A HEM 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc2 E FE HEM . A HEM 141 1_555 F C CMO . A CMO 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? metalc ? metalc3 B NE2 HIS 82 B HIS 82 1_555 G FE HEM . B HEM 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc4 G FE HEM . B HEM 136 1_555 H C CMO . B CMO 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.868 ? metalc ? metalc5 C NE2 HIS 87 C HIS 87 1_555 I FE HEM . C HEM 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc6 I FE HEM . C HEM 141 1_555 J C CMO . C CMO 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.906 ? metalc ? metalc7 D NE2 HIS 82 D HIS 82 1_555 K FE HEM . D HEM 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc8 K FE HEM . D HEM 136 1_555 L C CMO . D CMO 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.911 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 130 n n CHA C4D HEM doub 131 n n CHA HHA HEM sing 132 n n CHB C4A HEM sing 133 n n CHB C1B HEM doub 134 n n CHB HHB HEM sing 135 n n CHC C4B HEM sing 136 n n CHC C1C HEM doub 137 n n CHC HHC HEM sing 138 n n CHD C4C HEM doub 139 n n CHD C1D HEM sing 140 n n CHD HHD HEM sing 141 n n C1A C2A HEM doub 142 n y C1A NA HEM sing 143 n y C2A C3A HEM sing 144 n y C2A CAA HEM sing 145 n n C3A C4A HEM doub 146 n y C3A CMA HEM sing 147 n n C4A NA HEM sing 148 n y CMA HMA HEM sing 149 n n CMA HMAA HEM sing 150 n n CMA HMAB HEM sing 151 n n CAA CBA HEM sing 152 n n CAA HAA HEM sing 153 n n CAA HAAA HEM sing 154 n n CBA CGA HEM sing 155 n n CBA HBA HEM sing 156 n n CBA HBAA HEM sing 157 n n CGA O1A HEM doub 158 n n CGA O2A HEM sing 159 n n C1B C2B HEM sing 160 n n C1B NB HEM sing 161 n n C2B C3B HEM doub 162 n n C2B CMB HEM sing 163 n n C3B C4B HEM sing 164 n n C3B CAB HEM sing 165 n n C4B NB HEM doub 166 n n CMB HMB HEM sing 167 n n CMB HMBA HEM sing 168 n n CMB HMBB HEM sing 169 n n CAB CBB HEM doub 170 n n CAB HAB HEM sing 171 n n CBB HBB HEM sing 172 n n CBB HBBA HEM sing 173 n n C1C C2C HEM sing 174 n y C1C NC HEM sing 175 n y C2C C3C HEM doub 176 n y C2C CMC HEM sing 177 n n C3C C4C HEM sing 178 n y C3C CAC HEM sing 179 n n C4C NC HEM sing 180 n y CMC HMC HEM sing 181 n n CMC HMCA HEM sing 182 n n CMC HMCB HEM sing 183 n n CAC CBC HEM doub 184 n n CAC HAC HEM sing 185 n n CBC HBC HEM sing 186 n n CBC HBCA HEM sing 187 n n C1D C2D HEM sing 188 n n C1D ND HEM doub 189 n n C2D C3D HEM doub 190 n n C2D CMD HEM sing 191 n n C3D C4D HEM sing 192 n n C3D CAD HEM sing 193 n n C4D ND HEM sing 194 n n CMD HMD HEM sing 195 n n CMD HMDA HEM sing 196 n n CMD HMDB HEM sing 197 n n CAD CBD HEM sing 198 n n CAD HAD HEM sing 199 n n CAD HADA HEM sing 200 n n CBD CGD HEM sing 201 n n CBD HBD HEM sing 202 n n CBD HBDA HEM sing 203 n n CGD O1D HEM doub 204 n n CGD O2D HEM sing 205 n n O2A H2A HEM sing 206 n n O2D H2D HEM sing 207 n n FE NA HEM sing 208 n n FE NB HEM sing 209 n n FE NC HEM sing 210 n n FE ND HEM sing 211 n n # _atom_sites.entry_id 1GCW _atom_sites.fract_transf_matrix[1][1] 0.014993 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01243 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008709 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 HEM A 1 141 141 HEM HEM . F 4 CMO A 1 142 142 CMO CMO . G 3 HEM B 1 136 134 HEM HEM . H 4 CMO B 1 137 135 CMO CMO . I 3 HEM C 1 141 141 HEM HEM . J 4 CMO C 1 142 142 CMO CMO . K 3 HEM D 1 136 134 HEM HEM . L 4 CMO D 1 137 135 CMO CMO . M 5 HOH A 1 1001 1001 HOH HOH . M 5 HOH A 2 1002 1002 HOH HOH . M 5 HOH A 3 1003 1003 HOH HOH . M 5 HOH A 4 1004 1004 HOH HOH . M 5 HOH A 5 1005 1005 HOH HOH . M 5 HOH A 6 1006 1006 HOH HOH . M 5 HOH A 7 1007 1007 HOH HOH . M 5 HOH A 8 1008 1008 HOH HOH . M 5 HOH A 9 1010 1010 HOH HOH . M 5 HOH A 10 1012 1012 HOH HOH . M 5 HOH A 11 1013 1013 HOH HOH . M 5 HOH A 12 1014 1014 HOH HOH . M 5 HOH A 13 1015 1015 HOH HOH . M 5 HOH A 14 1029 1029 HOH HOH . M 5 HOH A 15 1030 1030 HOH HOH . M 5 HOH A 16 1031 1031 HOH HOH . M 5 HOH A 17 1032 1032 HOH HOH . M 5 HOH A 18 1033 1033 HOH HOH . M 5 HOH A 19 1034 1034 HOH HOH . M 5 HOH A 20 1035 1035 HOH HOH . M 5 HOH A 21 1038 1038 HOH HOH . M 5 HOH A 22 1039 1039 HOH HOH . N 5 HOH B 1 1011 1011 HOH HOH . N 5 HOH B 2 1016 1016 HOH HOH . N 5 HOH B 3 1017 1017 HOH HOH . N 5 HOH B 4 1018 1018 HOH HOH . N 5 HOH B 5 1019 1019 HOH HOH . N 5 HOH B 6 1020 1020 HOH HOH . N 5 HOH B 7 1040 1040 HOH HOH . N 5 HOH B 8 1041 1041 HOH HOH . N 5 HOH B 9 1042 1042 HOH HOH . N 5 HOH B 10 1043 1043 HOH HOH . N 5 HOH B 11 1044 1044 HOH HOH . N 5 HOH B 12 1045 1045 HOH HOH . N 5 HOH B 13 1046 1046 HOH HOH . N 5 HOH B 14 1047 1047 HOH HOH . N 5 HOH B 15 1049 1049 HOH HOH . N 5 HOH B 16 1050 1050 HOH HOH . N 5 HOH B 17 1051 1051 HOH HOH . N 5 HOH B 18 1052 1052 HOH HOH . O 5 HOH C 1 1021 1021 HOH HOH . O 5 HOH C 2 1022 1022 HOH HOH . O 5 HOH C 3 1023 1023 HOH HOH . O 5 HOH C 4 1024 1024 HOH HOH . O 5 HOH C 5 1025 1025 HOH HOH . O 5 HOH C 6 1026 1026 HOH HOH . O 5 HOH C 7 1048 1048 HOH HOH . O 5 HOH C 8 1053 1053 HOH HOH . O 5 HOH C 9 1055 1055 HOH HOH . O 5 HOH C 10 1056 1056 HOH HOH . O 5 HOH C 11 1058 1058 HOH HOH . O 5 HOH C 12 1059 1059 HOH HOH . O 5 HOH C 13 1060 1060 HOH HOH . O 5 HOH C 14 1062 1062 HOH HOH . O 5 HOH C 15 1063 1063 HOH HOH . P 5 HOH D 1 1009 1009 HOH HOH . P 5 HOH D 2 1027 1027 HOH HOH . P 5 HOH D 3 1028 1028 HOH HOH . P 5 HOH D 4 1036 1036 HOH HOH . P 5 HOH D 5 1037 1037 HOH HOH . P 5 HOH D 6 1054 1054 HOH HOH . P 5 HOH D 7 1057 1057 HOH HOH . P 5 HOH D 8 1061 1061 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . I 3 20.227 46.654 61.499 1 44.49 ? CHA HEM 141 C 1 HETATM 2 C CHB HEM . . . I 3 20.085 49.519 57.578 1 42.74 ? CHB HEM 141 C 1 HETATM 3 C CHC HEM . . . I 3 18.581 45.725 54.89 1 38.86 ? CHC HEM 141 C 1 HETATM 4 C CHD HEM . . . I 3 18.101 43.043 58.969 1 38.74 ? CHD HEM 141 C 1 HETATM 5 C C1A HEM . . . I 3 20.268 47.761 60.666 1 41.73 ? C1A HEM 141 C 1 HETATM 6 C C2A HEM . . . I 3 20.77 49.042 61.074 1 45 ? C2A HEM 141 C 1 HETATM 7 C C3A HEM . . . I 3 20.733 49.862 59.978 1 42.49 ? C3A HEM 141 C 1 HETATM 8 C C4A HEM . . . I 3 20.134 49.086 58.905 1 40.07 ? C4A HEM 141 C 1 HETATM 9 C CMA HEM . . . I 3 21.295 51.281 59.867 1 33.79 ? CMA HEM 141 C 1 HETATM 10 C CAA HEM . . . I 3 21.177 49.407 62.495 1 46.81 ? CAA HEM 141 C 1 HETATM 11 C CBA HEM . . . I 3 22.674 49.325 62.708 1 54.5 ? CBA HEM 141 C 1 HETATM 12 C CGA HEM . . . I 3 23.054 49.241 64.174 1 61.71 ? CGA HEM 141 C 1 HETATM 13 O O1A HEM . . . I 3 22.237 49.655 65.03 1 66.1 ? O1A HEM 141 C 1 HETATM 14 O O2A HEM . . . I 3 24.172 48.76 64.467 1 62.32 ? O2A HEM 141 C 1 HETATM 15 C C1B HEM . . . I 3 19.739 48.694 56.49 1 42.5 ? C1B HEM 141 C 1 HETATM 16 C C2B HEM . . . I 3 19.719 49.159 55.11 1 41.57 ? C2B HEM 141 C 1 HETATM 17 C C3B HEM . . . I 3 19.347 48.095 54.354 1 36.8 ? C3B HEM 141 C 1 HETATM 18 C C4B HEM . . . I 3 19.077 46.98 55.266 1 38.2 ? C4B HEM 141 C 1 HETATM 19 C CMB HEM . . . I 3 20.037 50.585 54.625 1 36.26 ? CMB HEM 141 C 1 HETATM 20 C CAB HEM . . . I 3 19.388 48.064 52.975 1 33.6 ? CAB HEM 141 C 1 HETATM 21 C CBB HEM . . . I 3 18.414 48.695 52.198 1 32.02 ? CBB HEM 141 C 1 HETATM 22 C C1C HEM . . . I 3 18.26 44.695 55.792 1 38.32 ? C1C HEM 141 C 1 HETATM 23 C C2C HEM . . . I 3 17.605 43.45 55.411 1 38.73 ? C2C HEM 141 C 1 HETATM 24 C C3C HEM . . . I 3 17.411 42.731 56.557 1 33.78 ? C3C HEM 141 C 1 HETATM 25 C C4C HEM . . . I 3 18.005 43.497 57.64 1 34.85 ? C4C HEM 141 C 1 HETATM 26 C CMC HEM . . . I 3 17.229 43 53.994 1 35.93 ? CMC HEM 141 C 1 HETATM 27 C CAC HEM . . . I 3 16.709 41.536 56.669 1 34.05 ? CAC HEM 141 C 1 HETATM 28 C CBC HEM . . . I 3 15.381 41.412 56.221 1 38.13 ? CBC HEM 141 C 1 HETATM 29 C C1D HEM . . . I 3 18.606 43.835 60.017 1 41.23 ? C1D HEM 141 C 1 HETATM 30 C C2D HEM . . . I 3 18.639 43.435 61.415 1 43.31 ? C2D HEM 141 C 1 HETATM 31 C C3D HEM . . . I 3 19.282 44.4 62.122 1 46.56 ? C3D HEM 141 C 1 HETATM 32 C C4D HEM . . . I 3 19.626 45.434 61.153 1 43.47 ? C4D HEM 141 C 1 HETATM 33 C CMD HEM . . . I 3 18.043 42.16 62.003 1 46.58 ? CMD HEM 141 C 1 HETATM 34 C CAD HEM . . . I 3 19.685 44.309 63.604 1 47.86 ? CAD HEM 141 C 1 HETATM 35 C CBD HEM . . . I 3 19.138 45.412 64.501 1 57.01 ? CBD HEM 141 C 1 HETATM 36 C CGD HEM . . . I 3 18.601 44.898 65.825 1 61 ? CGD HEM 141 C 1 HETATM 37 O O1D HEM . . . I 3 19.368 44.889 66.81 1 61.84 ? O1D HEM 141 C 1 HETATM 38 O O2D HEM . . . I 3 17.413 44.508 65.885 1 62.53 ? O2D HEM 141 C 1 HETATM 39 N NA HEM . . . I 3 19.871 47.776 59.324 1 39.87 ? NA HEM 141 C 1 HETATM 40 N NB HEM . . . I 3 19.355 47.349 56.581 1 40.45 ? NB HEM 141 C 1 HETATM 41 N NC HEM . . . I 3 18.478 44.735 57.176 1 37.82 ? NC HEM 141 C 1 HETATM 42 N ND HEM . . . I 3 19.164 45.107 59.867 1 42.19 ? ND HEM 141 C 1 HETATM 43 FE FE HEM . . . I 3 19.243 46.245 58.228 1 32.02 ? FE HEM 141 C 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #