data_1GCZ # _model_server_result.job_id jigNkWXchv4gmlyUsBbnfw _model_server_result.datetime_utc '2024-11-22 19:56:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1gcz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":902}' # _entry.id 1GCZ # _exptl.entry_id 1GCZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 234.205 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '7-HYDROXY-2-OXO-CHROMENE-3-CARBOXYLIC ACID ETHYL ESTER' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1GCZ _cell.length_a 67.6 _cell.length_b 67.4 _cell.length_c 87.3 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1GCZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 K N N ? 4 N N N ? 4 S N N # _chem_comp.formula 'C12 H10 O5' _chem_comp.formula_weight 234.205 _chem_comp.id YZ9 _chem_comp.mon_nstd_flag . _chem_comp.name '7-HYDROXY-2-OXO-CHROMENE-3-CARBOXYLIC ACID ETHYL ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3 C11 YZ9 sing 400 n n C3 H31 YZ9 sing 401 n n C3 H32 YZ9 sing 402 n n C3 H33 YZ9 sing 403 n n C11 O2 YZ9 sing 404 n n C11 H111 YZ9 sing 405 n n C11 H112 YZ9 sing 406 n n O1 C12 YZ9 doub 407 n n O2 C12 YZ9 sing 408 n n C6 C2 YZ9 doub 409 n y C6 C10 YZ9 sing 410 n y C6 H6 YZ9 sing 411 n n C5 C2 YZ9 sing 412 n y C5 C9 YZ9 doub 413 n y C5 H5 YZ9 sing 414 n n C4 C1 YZ9 doub 415 n y C4 C8 YZ9 sing 416 n y C4 H4 YZ9 sing 417 n n O3 C1 YZ9 sing 418 n y O3 C7 YZ9 sing 419 n y C2 C1 YZ9 sing 420 n y C7 O5 YZ9 doub 421 n n C7 C9 YZ9 sing 422 n y C12 C9 YZ9 sing 423 n n O4 C8 YZ9 sing 424 n n O4 HO4 YZ9 sing 425 n n C10 C8 YZ9 doub 426 n y C10 H10 YZ9 sing 427 n n # _atom_sites.entry_id 1GCZ _atom_sites.fract_transf_matrix[1][1] 0.014793 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014837 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011455 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 SO4 A 1 553 553 SO4 SO4 . E 2 SO4 A 1 554 554 SO4 SO4 . F 2 SO4 A 1 557 557 SO4 SO4 . G 2 SO4 A 1 560 560 SO4 SO4 . H 2 SO4 A 1 561 561 SO4 SO4 . I 2 SO4 A 1 562 562 SO4 SO4 . J 3 CIT A 1 550 550 CIT CIT . K 4 YZ9 A 1 900 900 YZ9 YZ9 . L 2 SO4 B 1 556 556 SO4 SO4 . M 3 CIT B 1 551 551 CIT CIT . N 4 YZ9 B 1 902 902 YZ9 YZ9 . O 2 SO4 C 1 555 555 SO4 SO4 . P 2 SO4 C 1 558 558 SO4 SO4 . Q 2 SO4 C 1 559 559 SO4 SO4 . R 3 CIT C 1 552 552 CIT CIT . S 4 YZ9 C 1 901 901 YZ9 YZ9 . T 5 HOH A 1 563 563 HOH HOH . T 5 HOH A 2 565 565 HOH HOH . T 5 HOH A 3 591 591 HOH HOH . T 5 HOH A 4 592 592 HOH HOH . T 5 HOH A 5 594 594 HOH HOH . T 5 HOH A 6 597 597 HOH HOH . T 5 HOH A 7 599 599 HOH HOH . T 5 HOH A 8 602 602 HOH HOH . T 5 HOH A 9 604 604 HOH HOH . T 5 HOH A 10 607 607 HOH HOH . T 5 HOH A 11 615 615 HOH HOH . T 5 HOH A 12 616 616 HOH HOH . T 5 HOH A 13 618 618 HOH HOH . T 5 HOH A 14 623 623 HOH HOH . T 5 HOH A 15 629 629 HOH HOH . T 5 HOH A 16 636 636 HOH HOH . T 5 HOH A 17 639 639 HOH HOH . T 5 HOH A 18 645 645 HOH HOH . T 5 HOH A 19 646 646 HOH HOH . T 5 HOH A 20 649 649 HOH HOH . T 5 HOH A 21 650 650 HOH HOH . T 5 HOH A 22 652 652 HOH HOH . T 5 HOH A 23 655 655 HOH HOH . T 5 HOH A 24 656 656 HOH HOH . T 5 HOH A 25 660 660 HOH HOH . T 5 HOH A 26 665 665 HOH HOH . T 5 HOH A 27 666 666 HOH HOH . T 5 HOH A 28 668 668 HOH HOH . T 5 HOH A 29 669 669 HOH HOH . T 5 HOH A 30 676 676 HOH HOH . T 5 HOH A 31 680 680 HOH HOH . T 5 HOH A 32 686 686 HOH HOH . T 5 HOH A 33 688 688 HOH HOH . T 5 HOH A 34 694 694 HOH HOH . U 5 HOH B 1 564 564 HOH HOH . U 5 HOH B 2 566 566 HOH HOH . U 5 HOH B 3 568 568 HOH HOH . U 5 HOH B 4 569 569 HOH HOH . U 5 HOH B 5 572 572 HOH HOH . U 5 HOH B 6 576 576 HOH HOH . U 5 HOH B 7 577 577 HOH HOH . U 5 HOH B 8 578 578 HOH HOH . U 5 HOH B 9 580 580 HOH HOH . U 5 HOH B 10 582 582 HOH HOH . U 5 HOH B 11 583 583 HOH HOH . U 5 HOH B 12 585 585 HOH HOH . U 5 HOH B 13 587 587 HOH HOH . U 5 HOH B 14 588 588 HOH HOH . U 5 HOH B 15 593 593 HOH HOH . U 5 HOH B 16 610 610 HOH HOH . U 5 HOH B 17 611 611 HOH HOH . U 5 HOH B 18 612 612 HOH HOH . U 5 HOH B 19 617 617 HOH HOH . U 5 HOH B 20 619 619 HOH HOH . U 5 HOH B 21 620 620 HOH HOH . U 5 HOH B 22 624 624 HOH HOH . U 5 HOH B 23 626 626 HOH HOH . U 5 HOH B 24 627 627 HOH HOH . U 5 HOH B 25 628 628 HOH HOH . U 5 HOH B 26 630 630 HOH HOH . U 5 HOH B 27 631 631 HOH HOH . U 5 HOH B 28 632 632 HOH HOH . U 5 HOH B 29 633 633 HOH HOH . U 5 HOH B 30 634 634 HOH HOH . U 5 HOH B 31 635 635 HOH HOH . U 5 HOH B 32 637 637 HOH HOH . U 5 HOH B 33 638 638 HOH HOH . U 5 HOH B 34 640 640 HOH HOH . U 5 HOH B 35 641 641 HOH HOH . U 5 HOH B 36 643 643 HOH HOH . U 5 HOH B 37 647 647 HOH HOH . U 5 HOH B 38 654 654 HOH HOH . U 5 HOH B 39 657 657 HOH HOH . U 5 HOH B 40 658 658 HOH HOH . U 5 HOH B 41 661 661 HOH HOH . U 5 HOH B 42 662 662 HOH HOH . U 5 HOH B 43 663 663 HOH HOH . U 5 HOH B 44 667 667 HOH HOH . U 5 HOH B 45 670 670 HOH HOH . U 5 HOH B 46 671 671 HOH HOH . U 5 HOH B 47 673 673 HOH HOH . U 5 HOH B 48 675 675 HOH HOH . U 5 HOH B 49 677 677 HOH HOH . U 5 HOH B 50 678 678 HOH HOH . U 5 HOH B 51 687 687 HOH HOH . U 5 HOH B 52 689 689 HOH HOH . U 5 HOH B 53 693 693 HOH HOH . U 5 HOH B 54 695 695 HOH HOH . U 5 HOH B 55 696 696 HOH HOH . U 5 HOH B 56 697 697 HOH HOH . V 5 HOH C 1 567 567 HOH HOH . V 5 HOH C 2 570 570 HOH HOH . V 5 HOH C 3 571 571 HOH HOH . V 5 HOH C 4 573 573 HOH HOH . V 5 HOH C 5 574 574 HOH HOH . V 5 HOH C 6 575 575 HOH HOH . V 5 HOH C 7 579 579 HOH HOH . V 5 HOH C 8 581 581 HOH HOH . V 5 HOH C 9 584 584 HOH HOH . V 5 HOH C 10 586 586 HOH HOH . V 5 HOH C 11 589 589 HOH HOH . V 5 HOH C 12 590 590 HOH HOH . V 5 HOH C 13 595 595 HOH HOH . V 5 HOH C 14 596 596 HOH HOH . V 5 HOH C 15 598 598 HOH HOH . V 5 HOH C 16 600 600 HOH HOH . V 5 HOH C 17 601 601 HOH HOH . V 5 HOH C 18 603 603 HOH HOH . V 5 HOH C 19 605 605 HOH HOH . V 5 HOH C 20 606 606 HOH HOH . V 5 HOH C 21 608 608 HOH HOH . V 5 HOH C 22 609 609 HOH HOH . V 5 HOH C 23 613 613 HOH HOH . V 5 HOH C 24 614 614 HOH HOH . V 5 HOH C 25 621 621 HOH HOH . V 5 HOH C 26 622 622 HOH HOH . V 5 HOH C 27 625 625 HOH HOH . V 5 HOH C 28 642 642 HOH HOH . V 5 HOH C 29 644 644 HOH HOH . V 5 HOH C 30 648 648 HOH HOH . V 5 HOH C 31 651 651 HOH HOH . V 5 HOH C 32 653 653 HOH HOH . V 5 HOH C 33 659 659 HOH HOH . V 5 HOH C 34 664 664 HOH HOH . V 5 HOH C 35 672 672 HOH HOH . V 5 HOH C 36 674 674 HOH HOH . V 5 HOH C 37 679 679 HOH HOH . V 5 HOH C 38 681 681 HOH HOH . V 5 HOH C 39 682 682 HOH HOH . V 5 HOH C 40 683 683 HOH HOH . V 5 HOH C 41 684 684 HOH HOH . V 5 HOH C 42 685 685 HOH HOH . V 5 HOH C 43 690 690 HOH HOH . V 5 HOH C 44 691 691 HOH HOH . V 5 HOH C 45 692 692 HOH HOH . V 5 HOH C 46 698 698 HOH HOH . V 5 HOH C 47 699 699 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C3 YZ9 . . . N 4 45.413 34.814 -5.47 1 38.55 ? C3 YZ9 902 B 1 HETATM 2 C C11 YZ9 . . . N 4 46.604 33.824 -5.34 1 41.29 ? C11 YZ9 902 B 1 HETATM 3 O O1 YZ9 . . . N 4 45.942 34.522 -3.006 1 37.52 ? O1 YZ9 902 B 1 HETATM 4 O O2 YZ9 . . . N 4 47.656 34.181 -4.346 1 37.46 ? O2 YZ9 902 B 1 HETATM 5 C C6 YZ9 . . . N 4 48.124 35.011 1.622 1 26.56 ? C6 YZ9 902 B 1 HETATM 6 C C5 YZ9 . . . N 4 47.618 34.978 -0.8 1 28.92 ? C5 YZ9 902 B 1 HETATM 7 C C4 YZ9 . . . N 4 50.855 35.914 0.968 1 27.65 ? C4 YZ9 902 B 1 HETATM 8 O O3 YZ9 . . . N 4 50.258 35.857 -1.378 1 30.2 ? O3 YZ9 902 B 1 HETATM 9 C C2 YZ9 . . . N 4 48.542 35.224 0.296 1 27.14 ? C2 YZ9 902 B 1 HETATM 10 C C1 YZ9 . . . N 4 49.88 35.671 -0.042 1 28.74 ? C1 YZ9 902 B 1 HETATM 11 C C7 YZ9 . . . N 4 49.469 35.52 -2.389 1 31.01 ? C7 YZ9 902 B 1 HETATM 12 C C12 YZ9 . . . N 4 47.138 34.552 -3.187 1 35.21 ? C12 YZ9 902 B 1 HETATM 13 O O4 YZ9 . . . N 4 51.25 35.876 3.273 1 24.08 ? O4 YZ9 902 B 1 HETATM 14 O O5 YZ9 . . . N 4 49.894 35.626 -3.482 1 29.09 ? O5 YZ9 902 B 1 HETATM 15 C C10 YZ9 . . . N 4 49.062 35.234 2.644 1 25.21 ? C10 YZ9 902 B 1 HETATM 16 C C9 YZ9 . . . N 4 48.057 35.009 -2.089 1 31.51 ? C9 YZ9 902 B 1 HETATM 17 C C8 YZ9 . . . N 4 50.374 35.67 2.282 1 26.16 ? C8 YZ9 902 B 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 251 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 17 #