data_1GDK # _model_server_result.job_id rQEdsMsJB6bjkL4SwuW4uQ _model_server_result.datetime_utc '2025-06-23 19:19:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1gdk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":500}' # _entry.id 1GDK # _exptl.entry_id 1GDK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 129.159 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ISOQUINOLINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.8 _cell.angle_gamma 90 _cell.entry_id 1GDK _cell.length_a 92.9 _cell.length_b 51.93 _cell.length_c 38.24 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1GDK _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NE2 _struct_conn.ptnr1_label_comp_id HIS _struct_conn.ptnr1_label_seq_id 97 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id HIS _struct_conn.ptnr1_auth_seq_id 97 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 154 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.952 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C9 H7 N' _chem_comp.formula_weight 129.159 _chem_comp.id ISQ _chem_comp.mon_nstd_flag . _chem_comp.name ISOQUINOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N2 ISQ doub 242 n y C1 C8A ISQ sing 243 n y C1 H1 ISQ sing 244 n n N2 C3 ISQ sing 245 n y C3 C4 ISQ doub 246 n y C3 H3 ISQ sing 247 n n C4 C4A ISQ sing 248 n y C4 H4 ISQ sing 249 n n C4A C5 ISQ doub 250 n y C4A C8A ISQ sing 251 n y C5 C6 ISQ sing 252 n y C5 H5 ISQ sing 253 n n C6 C7 ISQ doub 254 n y C6 H6 ISQ sing 255 n n C7 C8 ISQ sing 256 n y C7 H7 ISQ sing 257 n n C8 C8A ISQ doub 258 n y C8 H8 ISQ sing 259 n n # _atom_sites.entry_id 1GDK _atom_sites.fract_transf_matrix[1][1] 0.010764 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001666 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019257 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026462 _atom_sites.fract_transf_vector[1] -0.25 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 154 154 HEM HEM . C 3 ISQ A 1 500 500 ISQ ISQ . D 4 HOH A 1 155 155 HOH HOH . D 4 HOH A 2 156 156 HOH HOH . D 4 HOH A 3 157 157 HOH HOH . D 4 HOH A 4 158 158 HOH HOH . D 4 HOH A 5 159 159 HOH HOH . D 4 HOH A 6 160 160 HOH HOH . D 4 HOH A 7 161 161 HOH HOH . D 4 HOH A 8 162 162 HOH HOH . D 4 HOH A 9 163 163 HOH HOH . D 4 HOH A 10 164 164 HOH HOH . D 4 HOH A 11 165 165 HOH HOH . D 4 HOH A 12 166 166 HOH HOH . D 4 HOH A 13 167 167 HOH HOH . D 4 HOH A 14 169 169 HOH HOH . D 4 HOH A 15 170 170 HOH HOH . D 4 HOH A 16 172 172 HOH HOH . D 4 HOH A 17 173 173 HOH HOH . D 4 HOH A 18 174 174 HOH HOH . D 4 HOH A 19 175 175 HOH HOH . D 4 HOH A 20 176 176 HOH HOH . D 4 HOH A 21 177 177 HOH HOH . D 4 HOH A 22 178 178 HOH HOH . D 4 HOH A 23 179 179 HOH HOH . D 4 HOH A 24 180 180 HOH HOH . D 4 HOH A 25 181 181 HOH HOH . D 4 HOH A 26 182 182 HOH HOH . D 4 HOH A 27 184 184 HOH HOH . D 4 HOH A 28 185 185 HOH HOH . D 4 HOH A 29 187 187 HOH HOH . D 4 HOH A 30 188 188 HOH HOH . D 4 HOH A 31 189 189 HOH HOH . D 4 HOH A 32 190 190 HOH HOH . D 4 HOH A 33 191 191 HOH HOH . D 4 HOH A 34 192 192 HOH HOH . D 4 HOH A 35 193 193 HOH HOH . D 4 HOH A 36 194 194 HOH HOH . D 4 HOH A 37 195 195 HOH HOH . D 4 HOH A 38 197 197 HOH HOH . D 4 HOH A 39 198 198 HOH HOH . D 4 HOH A 40 199 199 HOH HOH . D 4 HOH A 41 200 200 HOH HOH . D 4 HOH A 42 202 202 HOH HOH . D 4 HOH A 43 204 204 HOH HOH . D 4 HOH A 44 205 205 HOH HOH . D 4 HOH A 45 206 206 HOH HOH . D 4 HOH A 46 207 207 HOH HOH . D 4 HOH A 47 208 208 HOH HOH . D 4 HOH A 48 209 209 HOH HOH . D 4 HOH A 49 210 210 HOH HOH . D 4 HOH A 50 211 211 HOH HOH . D 4 HOH A 51 215 215 HOH HOH . D 4 HOH A 52 216 216 HOH HOH . D 4 HOH A 53 217 217 HOH HOH . D 4 HOH A 54 218 218 HOH HOH . D 4 HOH A 55 222 222 HOH HOH . D 4 HOH A 56 225 225 HOH HOH . D 4 HOH A 57 226 226 HOH HOH . D 4 HOH A 58 228 228 HOH HOH . D 4 HOH A 59 229 229 HOH HOH . D 4 HOH A 60 230 230 HOH HOH . D 4 HOH A 61 232 232 HOH HOH . D 4 HOH A 62 234 234 HOH HOH . D 4 HOH A 63 235 235 HOH HOH . D 4 HOH A 64 236 236 HOH HOH . D 4 HOH A 65 237 237 HOH HOH . D 4 HOH A 66 238 238 HOH HOH . D 4 HOH A 67 239 239 HOH HOH . D 4 HOH A 68 240 240 HOH HOH . D 4 HOH A 69 241 241 HOH HOH . D 4 HOH A 70 242 242 HOH HOH . D 4 HOH A 71 245 245 HOH HOH . D 4 HOH A 72 246 246 HOH HOH . D 4 HOH A 73 247 247 HOH HOH . D 4 HOH A 74 248 248 HOH HOH . D 4 HOH A 75 249 249 HOH HOH . D 4 HOH A 76 250 250 HOH HOH . D 4 HOH A 77 251 251 HOH HOH . D 4 HOH A 78 252 252 HOH HOH . D 4 HOH A 79 255 255 HOH HOH . D 4 HOH A 80 257 257 HOH HOH . D 4 HOH A 81 258 258 HOH HOH . D 4 HOH A 82 259 259 HOH HOH . D 4 HOH A 83 264 264 HOH HOH . D 4 HOH A 84 265 265 HOH HOH . D 4 HOH A 85 269 269 HOH HOH . D 4 HOH A 86 270 270 HOH HOH . D 4 HOH A 87 271 271 HOH HOH . D 4 HOH A 88 274 274 HOH HOH . D 4 HOH A 89 276 276 HOH HOH . D 4 HOH A 90 278 278 HOH HOH . D 4 HOH A 91 279 279 HOH HOH . D 4 HOH A 92 281 281 HOH HOH . D 4 HOH A 93 284 284 HOH HOH . D 4 HOH A 94 285 285 HOH HOH . D 4 HOH A 95 286 286 HOH HOH . D 4 HOH A 96 287 287 HOH HOH . D 4 HOH A 97 292 292 HOH HOH . D 4 HOH A 98 295 295 HOH HOH . D 4 HOH A 99 296 296 HOH HOH . D 4 HOH A 100 297 297 HOH HOH . D 4 HOH A 101 298 298 HOH HOH . D 4 HOH A 102 299 299 HOH HOH . D 4 HOH A 103 300 300 HOH HOH . D 4 HOH A 104 301 301 HOH HOH . D 4 HOH A 105 303 303 HOH HOH . D 4 HOH A 106 305 305 HOH HOH . D 4 HOH A 107 306 306 HOH HOH . D 4 HOH A 108 307 307 HOH HOH . D 4 HOH A 109 308 308 HOH HOH . D 4 HOH A 110 309 309 HOH HOH . D 4 HOH A 111 310 310 HOH HOH . D 4 HOH A 112 311 311 HOH HOH . D 4 HOH A 113 312 312 HOH HOH . D 4 HOH A 114 313 313 HOH HOH . D 4 HOH A 115 314 314 HOH HOH . D 4 HOH A 116 315 315 HOH HOH . D 4 HOH A 117 317 317 HOH HOH . D 4 HOH A 118 320 320 HOH HOH . D 4 HOH A 119 330 330 HOH HOH . D 4 HOH A 120 331 331 HOH HOH . D 4 HOH A 121 332 332 HOH HOH . D 4 HOH A 122 334 334 HOH HOH . D 4 HOH A 123 335 335 HOH HOH . D 4 HOH A 124 340 340 HOH HOH . D 4 HOH A 125 346 346 HOH HOH . D 4 HOH A 126 347 347 HOH HOH . D 4 HOH A 127 348 348 HOH HOH . D 4 HOH A 128 349 349 HOH HOH . D 4 HOH A 129 350 350 HOH HOH . D 4 HOH A 130 351 351 HOH HOH . D 4 HOH A 131 352 352 HOH HOH . D 4 HOH A 132 353 353 HOH HOH . D 4 HOH A 133 354 354 HOH HOH . D 4 HOH A 134 356 356 HOH HOH . D 4 HOH A 135 358 358 HOH HOH . D 4 HOH A 136 360 360 HOH HOH . D 4 HOH A 137 361 361 HOH HOH . D 4 HOH A 138 362 362 HOH HOH . D 4 HOH A 139 366 366 HOH HOH . D 4 HOH A 140 369 369 HOH HOH . D 4 HOH A 141 371 371 HOH HOH . D 4 HOH A 142 373 373 HOH HOH . D 4 HOH A 143 374 374 HOH HOH . D 4 HOH A 144 375 375 HOH HOH . D 4 HOH A 145 378 378 HOH HOH . D 4 HOH A 146 389 389 HOH HOH . D 4 HOH A 147 390 390 HOH HOH . D 4 HOH A 148 392 392 HOH HOH . D 4 HOH A 149 393 393 HOH HOH . D 4 HOH A 150 394 394 HOH HOH . D 4 HOH A 151 395 395 HOH HOH . D 4 HOH A 152 396 396 HOH HOH . D 4 HOH A 153 397 397 HOH HOH . D 4 HOH A 154 400 400 HOH HOH . D 4 HOH A 155 401 401 HOH HOH . D 4 HOH A 156 404 404 HOH HOH . D 4 HOH A 157 407 407 HOH HOH . D 4 HOH A 158 408 408 HOH HOH . D 4 HOH A 159 413 413 HOH HOH . D 4 HOH A 160 415 415 HOH HOH . D 4 HOH A 161 416 416 HOH HOH . D 4 HOH A 162 423 423 HOH HOH . D 4 HOH A 163 432 432 HOH HOH . D 4 HOH A 164 433 433 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ISQ . . . C 3 39.439 -29.994 26.784 1 12.76 ? C1 ISQ 500 A 1 HETATM 2 N N2 ISQ . . . C 3 40.044 -30.99 27.498 1 20.99 ? N2 ISQ 500 A 1 HETATM 3 C C3 ISQ . . . C 3 41.1 -31.707 27.025 1 20.73 ? C3 ISQ 500 A 1 HETATM 4 C C4 ISQ . . . C 3 41.586 -31.437 25.752 1 26.28 ? C4 ISQ 500 A 1 HETATM 5 C C4A ISQ . . . C 3 41.026 -30.394 25.032 1 23.72 ? C4A ISQ 500 A 1 HETATM 6 C C5 ISQ . . . C 3 41.57 -29.999 23.82 1 27.46 ? C5 ISQ 500 A 1 HETATM 7 C C6 ISQ . . . C 3 40.975 -29.007 23.031 1 23.21 ? C6 ISQ 500 A 1 HETATM 8 C C7 ISQ . . . C 3 39.827 -28.405 23.506 1 19.54 ? C7 ISQ 500 A 1 HETATM 9 C C8 ISQ . . . C 3 39.303 -28.787 24.69 1 17.9 ? C8 ISQ 500 A 1 HETATM 10 C C8A ISQ . . . C 3 39.905 -29.736 25.513 1 22.95 ? C8A ISQ 500 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #