data_1GE6 # _model_server_result.job_id 3cCbq4FvKKl9H0rFiAVvbQ _model_server_result.datetime_utc '2024-11-22 10:30:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ge6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":900}' # _entry.id 1GE6 # _exptl.entry_id 1GE6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description alpha-D-mannopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1GE6 _cell.length_a 58.65 _cell.length_b 58.65 _cell.length_c 145.18 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1GE6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 5 A CYS 5 1_555 A SG CYS 75 A CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 A SG CYS 77 A CYS 77 1_555 A SG CYS 97 A CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? covale ? covale1 A OG1 THR 42 A THR 42 1_555 B C1 MAN . A MAN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.484 ? metalc ? metalc1 A NE2 HIS 117 A HIS 117 1_555 C ZN ZN . A ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc2 A NE2 HIS 121 A HIS 121 1_555 C ZN ZN . A ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc3 A OD1 ASP 130 A ASP 130 1_555 C ZN ZN . A ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc4 A OD2 ASP 130 A ASP 130 1_555 C ZN ZN . A ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.65 ? metalc ? metalc5 C ZN ZN . A ZN 200 1_555 D O HOH . A HOH 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc6 C ZN ZN . A ZN 200 1_555 D O HOH . A HOH 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id MAN _chem_comp.mon_nstd_flag . _chem_comp.name alpha-D-mannopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms alpha-D-mannose;D-mannose;mannose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MAN sing 218 n n C1 O1 MAN sing 219 n n C1 O5 MAN sing 220 n n C1 H1 MAN sing 221 n n C2 C3 MAN sing 222 n n C2 O2 MAN sing 223 n n C2 H2 MAN sing 224 n n C3 C4 MAN sing 225 n n C3 O3 MAN sing 226 n n C3 H3 MAN sing 227 n n C4 C5 MAN sing 228 n n C4 O4 MAN sing 229 n n C4 H4 MAN sing 230 n n C5 C6 MAN sing 231 n n C5 O5 MAN sing 232 n n C5 H5 MAN sing 233 n n C6 O6 MAN sing 234 n n C6 H61 MAN sing 235 n n C6 H62 MAN sing 236 n n O1 HO1 MAN sing 237 n n O2 HO2 MAN sing 238 n n O3 HO3 MAN sing 239 n n O4 HO4 MAN sing 240 n n O6 HO6 MAN sing 241 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version MAN DManpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 MAN a-D-mannopyranose 'COMMON NAME' GMML 1 MAN a-D-Manp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 MAN Man 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1GE6 _atom_sites.fract_transf_matrix[1][1] 0.01705 _atom_sites.fract_transf_matrix[1][2] 0.009844 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019688 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006888 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MAN A 1 900 900 MAN MAN . C 3 ZN A 1 200 200 ZN ZN . D 4 HOH A 1 301 301 HOH WAT . D 4 HOH A 2 302 302 HOH WAT . D 4 HOH A 3 303 303 HOH WAT . D 4 HOH A 4 304 304 HOH WAT . D 4 HOH A 5 305 305 HOH WAT . D 4 HOH A 6 306 306 HOH WAT . D 4 HOH A 7 307 307 HOH WAT . D 4 HOH A 8 308 308 HOH WAT . D 4 HOH A 9 309 309 HOH WAT . D 4 HOH A 10 310 310 HOH WAT . D 4 HOH A 11 311 311 HOH WAT . D 4 HOH A 12 312 312 HOH WAT . D 4 HOH A 13 313 313 HOH WAT . D 4 HOH A 14 314 314 HOH WAT . D 4 HOH A 15 315 315 HOH WAT . D 4 HOH A 16 318 318 HOH WAT . D 4 HOH A 17 319 319 HOH WAT . D 4 HOH A 18 320 320 HOH WAT . D 4 HOH A 19 321 321 HOH WAT . D 4 HOH A 20 322 322 HOH WAT . D 4 HOH A 21 323 323 HOH WAT . D 4 HOH A 22 324 324 HOH WAT . D 4 HOH A 23 326 326 HOH WAT . D 4 HOH A 24 327 327 HOH WAT . D 4 HOH A 25 328 328 HOH WAT . D 4 HOH A 26 330 330 HOH WAT . D 4 HOH A 27 331 331 HOH WAT . D 4 HOH A 28 332 332 HOH WAT . D 4 HOH A 29 333 333 HOH WAT . D 4 HOH A 30 334 334 HOH WAT . D 4 HOH A 31 335 335 HOH WAT . D 4 HOH A 32 336 336 HOH WAT . D 4 HOH A 33 338 338 HOH WAT . D 4 HOH A 34 340 340 HOH WAT . D 4 HOH A 35 341 341 HOH WAT . D 4 HOH A 36 343 343 HOH WAT . D 4 HOH A 37 344 344 HOH WAT . D 4 HOH A 38 345 345 HOH WAT . D 4 HOH A 39 346 346 HOH WAT . D 4 HOH A 40 347 347 HOH WAT . D 4 HOH A 41 348 348 HOH WAT . D 4 HOH A 42 350 350 HOH WAT . D 4 HOH A 43 351 351 HOH WAT . D 4 HOH A 44 353 353 HOH WAT . D 4 HOH A 45 354 354 HOH WAT . D 4 HOH A 46 355 355 HOH WAT . D 4 HOH A 47 356 356 HOH WAT . D 4 HOH A 48 357 357 HOH WAT . D 4 HOH A 49 360 360 HOH WAT . D 4 HOH A 50 361 361 HOH WAT . D 4 HOH A 51 362 362 HOH WAT . D 4 HOH A 52 364 364 HOH WAT . D 4 HOH A 53 365 365 HOH WAT . D 4 HOH A 54 366 366 HOH WAT . D 4 HOH A 55 367 367 HOH WAT . D 4 HOH A 56 368 368 HOH WAT . D 4 HOH A 57 371 371 HOH WAT . D 4 HOH A 58 372 372 HOH WAT . D 4 HOH A 59 375 375 HOH WAT . D 4 HOH A 60 377 377 HOH WAT . D 4 HOH A 61 378 378 HOH WAT . D 4 HOH A 62 380 380 HOH WAT . D 4 HOH A 63 381 381 HOH WAT . D 4 HOH A 64 384 384 HOH WAT . D 4 HOH A 65 385 385 HOH WAT . D 4 HOH A 66 386 386 HOH WAT . D 4 HOH A 67 387 387 HOH WAT . D 4 HOH A 68 391 391 HOH WAT . D 4 HOH A 69 393 393 HOH WAT . D 4 HOH A 70 395 395 HOH WAT . D 4 HOH A 71 396 396 HOH WAT . D 4 HOH A 72 401 401 HOH WAT . D 4 HOH A 73 404 404 HOH WAT . D 4 HOH A 74 407 407 HOH WAT . D 4 HOH A 75 408 408 HOH WAT . D 4 HOH A 76 409 409 HOH WAT . D 4 HOH A 77 410 410 HOH WAT . D 4 HOH A 78 413 413 HOH WAT . D 4 HOH A 79 415 415 HOH WAT . D 4 HOH A 80 416 416 HOH WAT . D 4 HOH A 81 421 421 HOH WAT . D 4 HOH A 82 425 425 HOH WAT . D 4 HOH A 83 427 427 HOH WAT . D 4 HOH A 84 431 431 HOH WAT . D 4 HOH A 85 432 432 HOH WAT . D 4 HOH A 86 433 433 HOH WAT . D 4 HOH A 87 436 436 HOH WAT . D 4 HOH A 88 440 440 HOH WAT . D 4 HOH A 89 441 441 HOH WAT . D 4 HOH A 90 442 442 HOH WAT . D 4 HOH A 91 444 444 HOH WAT . D 4 HOH A 92 445 445 HOH WAT . D 4 HOH A 93 446 446 HOH WAT . D 4 HOH A 94 447 447 HOH WAT . D 4 HOH A 95 451 451 HOH WAT . D 4 HOH A 96 456 456 HOH WAT . D 4 HOH A 97 463 463 HOH WAT . D 4 HOH A 98 471 471 HOH WAT . D 4 HOH A 99 478 478 HOH WAT . D 4 HOH A 100 479 479 HOH WAT . D 4 HOH A 101 480 480 HOH WAT . D 4 HOH A 102 483 483 HOH WAT . D 4 HOH A 103 489 489 HOH WAT . D 4 HOH A 104 490 490 HOH WAT . D 4 HOH A 105 493 493 HOH WAT . D 4 HOH A 106 498 498 HOH WAT . D 4 HOH A 107 506 506 HOH WAT . D 4 HOH A 108 509 509 HOH WAT . D 4 HOH A 109 510 510 HOH WAT . D 4 HOH A 110 511 511 HOH WAT . D 4 HOH A 111 513 513 HOH WAT . D 4 HOH A 112 514 514 HOH WAT . D 4 HOH A 113 516 516 HOH WAT . D 4 HOH A 114 520 520 HOH WAT . D 4 HOH A 115 521 521 HOH WAT . D 4 HOH A 116 522 522 HOH WAT . D 4 HOH A 117 524 524 HOH WAT . D 4 HOH A 118 525 525 HOH WAT . D 4 HOH A 119 528 528 HOH WAT . D 4 HOH A 120 529 529 HOH WAT . D 4 HOH A 121 531 531 HOH WAT . D 4 HOH A 122 533 533 HOH WAT . D 4 HOH A 123 535 535 HOH WAT . D 4 HOH A 124 536 536 HOH WAT . D 4 HOH A 125 602 602 HOH WAT . D 4 HOH A 126 605 605 HOH WAT . D 4 HOH A 127 606 606 HOH WAT . D 4 HOH A 128 607 607 HOH WAT . D 4 HOH A 129 616 616 HOH WAT . D 4 HOH A 130 618 618 HOH WAT . D 4 HOH A 131 624 624 HOH WAT . D 4 HOH A 132 625 625 HOH WAT . D 4 HOH A 133 626 626 HOH WAT . D 4 HOH A 134 627 627 HOH WAT . D 4 HOH A 135 630 630 HOH WAT . D 4 HOH A 136 638 638 HOH WAT . D 4 HOH A 137 639 639 HOH WAT . D 4 HOH A 138 641 641 HOH WAT . D 4 HOH A 139 644 644 HOH WAT . D 4 HOH A 140 647 647 HOH WAT . D 4 HOH A 141 657 657 HOH WAT . D 4 HOH A 142 658 658 HOH WAT . D 4 HOH A 143 659 659 HOH WAT . D 4 HOH A 144 660 660 HOH WAT . D 4 HOH A 145 663 663 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MAN . . . B 2 17.689 6.828 -1.619 1 24.74 ? C1 MAN 900 A 1 HETATM 2 C C2 MAN . . . B 2 17.198 5.447 -1.464 1 25.76 ? C2 MAN 900 A 1 HETATM 3 C C3 MAN . . . B 2 18.291 4.494 -0.835 1 26.62 ? C3 MAN 900 A 1 HETATM 4 C C4 MAN . . . B 2 19.706 4.683 -1.47 1 26.96 ? C4 MAN 900 A 1 HETATM 5 C C5 MAN . . . B 2 20 6.095 -1.949 1 27.01 ? C5 MAN 900 A 1 HETATM 6 C C6 MAN . . . B 2 21.05 6.236 -3.05 1 27.55 ? C6 MAN 900 A 1 HETATM 7 O O2 MAN . . . B 2 16.822 4.954 -2.762 1 26.53 ? O2 MAN 900 A 1 HETATM 8 O O3 MAN . . . B 2 17.913 3.12 -0.979 1 27.04 ? O3 MAN 900 A 1 HETATM 9 O O4 MAN . . . B 2 20.717 4.346 -0.525 1 27.75 ? O4 MAN 900 A 1 HETATM 10 O O5 MAN . . . B 2 18.838 6.816 -2.511 1 26.16 ? O5 MAN 900 A 1 HETATM 11 O O6 MAN . . . B 2 21.498 7.569 -3.327 1 28.58 ? O6 MAN 900 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 11 #