data_1GEI # _model_server_result.job_id pF3XQM1HtXsii_mgfSVuPQ _model_server_result.datetime_utc '2024-10-12 12:23:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1gei # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 1GEI # _exptl.entry_id 1GEI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 83.132 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-BUTYL ISOCYANIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1GEI _cell.length_a 54.75 _cell.length_b 81.64 _cell.length_c 86.23 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1GEI _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 352 A CYS 352 1_555 B FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc2 B FE HEM . A HEM 501 1_555 C C NBN . A NBN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.849 ? metalc ? metalc3 B FE HEM . A HEM 501 1_555 C N NBN . A NBN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.931 ? # _chem_comp.formula 'C5 H9 N' _chem_comp.formula_weight 83.132 _chem_comp.id NBN _chem_comp.mon_nstd_flag . _chem_comp.name 'N-BUTYL ISOCYANIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C N NBN trip 319 n n N C1 NBN sing 320 n n C1 C2 NBN sing 321 n n C1 H11 NBN sing 322 n n C1 H12 NBN sing 323 n n C2 C3 NBN sing 324 n n C2 H21 NBN sing 325 n n C2 H22 NBN sing 326 n n C3 C4 NBN sing 327 n n C3 H31 NBN sing 328 n n C3 H32 NBN sing 329 n n C4 H41 NBN sing 330 n n C4 H42 NBN sing 331 n n C4 H43 NBN sing 332 n n # _atom_sites.entry_id 1GEI _atom_sites.fract_transf_matrix[1][1] 0.018265 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012249 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011597 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 501 501 HEM HEM . C 3 NBN A 1 502 502 NBN NBN . D 4 HOH A 1 503 1 HOH HOH . D 4 HOH A 2 504 2 HOH HOH . D 4 HOH A 3 505 3 HOH HOH . D 4 HOH A 4 506 4 HOH HOH . D 4 HOH A 5 507 5 HOH HOH . D 4 HOH A 6 508 6 HOH HOH . D 4 HOH A 7 509 7 HOH HOH . D 4 HOH A 8 510 8 HOH HOH . D 4 HOH A 9 511 9 HOH HOH . D 4 HOH A 10 512 10 HOH HOH . D 4 HOH A 11 513 11 HOH HOH . D 4 HOH A 12 514 12 HOH HOH . D 4 HOH A 13 515 13 HOH HOH . D 4 HOH A 14 516 14 HOH HOH . D 4 HOH A 15 517 15 HOH HOH . D 4 HOH A 16 518 16 HOH HOH . D 4 HOH A 17 519 17 HOH HOH . D 4 HOH A 18 520 18 HOH HOH . D 4 HOH A 19 521 19 HOH HOH . D 4 HOH A 20 522 20 HOH HOH . D 4 HOH A 21 523 21 HOH HOH . D 4 HOH A 22 524 22 HOH HOH . D 4 HOH A 23 525 23 HOH HOH . D 4 HOH A 24 526 24 HOH HOH . D 4 HOH A 25 527 25 HOH HOH . D 4 HOH A 26 528 26 HOH HOH . D 4 HOH A 27 529 27 HOH HOH . D 4 HOH A 28 530 28 HOH HOH . D 4 HOH A 29 531 29 HOH HOH . D 4 HOH A 30 532 30 HOH HOH . D 4 HOH A 31 533 31 HOH HOH . D 4 HOH A 32 534 32 HOH HOH . D 4 HOH A 33 535 33 HOH HOH . D 4 HOH A 34 536 34 HOH HOH . D 4 HOH A 35 537 35 HOH HOH . D 4 HOH A 36 538 36 HOH HOH . D 4 HOH A 37 539 37 HOH HOH . D 4 HOH A 38 540 38 HOH HOH . D 4 HOH A 39 541 39 HOH HOH . D 4 HOH A 40 542 40 HOH HOH . D 4 HOH A 41 543 41 HOH HOH . D 4 HOH A 42 544 42 HOH HOH . D 4 HOH A 43 545 43 HOH HOH . D 4 HOH A 44 546 44 HOH HOH . D 4 HOH A 45 547 45 HOH HOH . D 4 HOH A 46 548 46 HOH HOH . D 4 HOH A 47 549 47 HOH HOH . D 4 HOH A 48 550 48 HOH HOH . D 4 HOH A 49 551 49 HOH HOH . D 4 HOH A 50 552 50 HOH HOH . D 4 HOH A 51 553 51 HOH HOH . D 4 HOH A 52 554 52 HOH HOH . D 4 HOH A 53 555 53 HOH HOH . D 4 HOH A 54 556 54 HOH HOH . D 4 HOH A 55 557 55 HOH HOH . D 4 HOH A 56 558 56 HOH HOH . D 4 HOH A 57 559 57 HOH HOH . D 4 HOH A 58 560 58 HOH HOH . D 4 HOH A 59 561 59 HOH HOH . D 4 HOH A 60 562 60 HOH HOH . D 4 HOH A 61 563 61 HOH HOH . D 4 HOH A 62 564 62 HOH HOH . D 4 HOH A 63 565 63 HOH HOH . D 4 HOH A 64 566 64 HOH HOH . D 4 HOH A 65 567 65 HOH HOH . D 4 HOH A 66 568 66 HOH HOH . D 4 HOH A 67 569 67 HOH HOH . D 4 HOH A 68 570 68 HOH HOH . D 4 HOH A 69 571 69 HOH HOH . D 4 HOH A 70 572 70 HOH HOH . D 4 HOH A 71 573 71 HOH HOH . D 4 HOH A 72 574 72 HOH HOH . D 4 HOH A 73 575 73 HOH HOH . D 4 HOH A 74 576 74 HOH HOH . D 4 HOH A 75 577 75 HOH HOH . D 4 HOH A 76 578 76 HOH HOH . D 4 HOH A 77 579 77 HOH HOH . D 4 HOH A 78 580 78 HOH HOH . D 4 HOH A 79 581 79 HOH HOH . D 4 HOH A 80 582 80 HOH HOH . D 4 HOH A 81 583 81 HOH HOH . D 4 HOH A 82 584 82 HOH HOH . D 4 HOH A 83 585 83 HOH HOH . D 4 HOH A 84 586 84 HOH HOH . D 4 HOH A 85 587 85 HOH HOH . D 4 HOH A 86 588 86 HOH HOH . D 4 HOH A 87 589 87 HOH HOH . D 4 HOH A 88 590 88 HOH HOH . D 4 HOH A 89 591 89 HOH HOH . D 4 HOH A 90 592 90 HOH HOH . D 4 HOH A 91 593 91 HOH HOH . D 4 HOH A 92 594 92 HOH HOH . D 4 HOH A 93 595 93 HOH HOH . D 4 HOH A 94 596 94 HOH HOH . D 4 HOH A 95 597 95 HOH HOH . D 4 HOH A 96 598 96 HOH HOH . D 4 HOH A 97 599 97 HOH HOH . D 4 HOH A 98 600 98 HOH HOH . D 4 HOH A 99 601 99 HOH HOH . D 4 HOH A 100 602 100 HOH HOH . D 4 HOH A 101 603 101 HOH HOH . D 4 HOH A 102 604 102 HOH HOH . D 4 HOH A 103 605 103 HOH HOH . D 4 HOH A 104 606 104 HOH HOH . D 4 HOH A 105 607 105 HOH HOH . D 4 HOH A 106 608 106 HOH HOH . D 4 HOH A 107 609 107 HOH HOH . D 4 HOH A 108 610 108 HOH HOH . D 4 HOH A 109 611 109 HOH HOH . D 4 HOH A 110 612 110 HOH HOH . D 4 HOH A 111 613 111 HOH HOH . D 4 HOH A 112 614 112 HOH HOH . D 4 HOH A 113 615 113 HOH HOH . D 4 HOH A 114 616 114 HOH HOH . D 4 HOH A 115 617 115 HOH HOH . D 4 HOH A 116 618 116 HOH HOH . D 4 HOH A 117 619 117 HOH HOH . D 4 HOH A 118 620 118 HOH HOH . D 4 HOH A 119 621 119 HOH HOH . D 4 HOH A 120 622 120 HOH HOH . D 4 HOH A 121 623 121 HOH HOH . D 4 HOH A 122 624 122 HOH HOH . D 4 HOH A 123 625 123 HOH HOH . D 4 HOH A 124 626 124 HOH HOH . D 4 HOH A 125 627 125 HOH HOH . D 4 HOH A 126 628 126 HOH HOH . D 4 HOH A 127 629 127 HOH HOH . D 4 HOH A 128 630 128 HOH HOH . D 4 HOH A 129 631 129 HOH HOH . D 4 HOH A 130 632 130 HOH HOH . D 4 HOH A 131 633 131 HOH HOH . D 4 HOH A 132 634 132 HOH HOH . D 4 HOH A 133 635 133 HOH HOH . D 4 HOH A 134 636 134 HOH HOH . D 4 HOH A 135 637 135 HOH HOH . D 4 HOH A 136 638 136 HOH HOH . D 4 HOH A 137 639 137 HOH HOH . D 4 HOH A 138 640 138 HOH HOH . D 4 HOH A 139 641 139 HOH HOH . D 4 HOH A 140 642 140 HOH HOH . D 4 HOH A 141 643 141 HOH HOH . D 4 HOH A 142 644 142 HOH HOH . D 4 HOH A 143 645 143 HOH HOH . D 4 HOH A 144 646 144 HOH HOH . D 4 HOH A 145 647 145 HOH HOH . D 4 HOH A 146 648 146 HOH HOH . D 4 HOH A 147 649 147 HOH HOH . D 4 HOH A 148 650 148 HOH HOH . D 4 HOH A 149 651 149 HOH HOH . D 4 HOH A 150 652 150 HOH HOH . D 4 HOH A 151 653 151 HOH HOH . D 4 HOH A 152 654 152 HOH HOH . D 4 HOH A 153 655 153 HOH HOH . D 4 HOH A 154 656 154 HOH HOH . D 4 HOH A 155 657 155 HOH HOH . D 4 HOH A 156 658 156 HOH HOH . D 4 HOH A 157 659 157 HOH HOH . D 4 HOH A 158 660 158 HOH HOH . D 4 HOH A 159 661 159 HOH HOH . D 4 HOH A 160 662 160 HOH HOH . D 4 HOH A 161 663 161 HOH HOH . D 4 HOH A 162 664 162 HOH HOH . D 4 HOH A 163 665 163 HOH HOH . D 4 HOH A 164 666 164 HOH HOH . D 4 HOH A 165 667 165 HOH HOH . D 4 HOH A 166 668 166 HOH HOH . D 4 HOH A 167 669 167 HOH HOH . D 4 HOH A 168 670 168 HOH HOH . D 4 HOH A 169 671 169 HOH HOH . D 4 HOH A 170 672 170 HOH HOH . D 4 HOH A 171 673 171 HOH HOH . D 4 HOH A 172 674 172 HOH HOH . D 4 HOH A 173 675 173 HOH HOH . D 4 HOH A 174 676 174 HOH HOH . D 4 HOH A 175 677 175 HOH HOH . D 4 HOH A 176 678 176 HOH HOH . D 4 HOH A 177 679 177 HOH HOH . D 4 HOH A 178 680 178 HOH HOH . D 4 HOH A 179 681 179 HOH HOH . D 4 HOH A 180 682 180 HOH HOH . D 4 HOH A 181 683 181 HOH HOH . D 4 HOH A 182 684 182 HOH HOH . D 4 HOH A 183 685 183 HOH HOH . D 4 HOH A 184 686 184 HOH HOH . D 4 HOH A 185 687 185 HOH HOH . D 4 HOH A 186 688 186 HOH HOH . D 4 HOH A 187 689 187 HOH HOH . D 4 HOH A 188 690 188 HOH HOH . D 4 HOH A 189 691 189 HOH HOH . D 4 HOH A 190 692 190 HOH HOH . D 4 HOH A 191 693 191 HOH HOH . D 4 HOH A 192 694 192 HOH HOH . D 4 HOH A 193 695 193 HOH HOH . D 4 HOH A 194 696 194 HOH HOH . D 4 HOH A 195 697 195 HOH HOH . D 4 HOH A 196 698 196 HOH HOH . D 4 HOH A 197 699 197 HOH HOH . D 4 HOH A 198 700 198 HOH HOH . D 4 HOH A 199 701 199 HOH HOH . D 4 HOH A 200 702 200 HOH HOH . D 4 HOH A 201 703 201 HOH HOH . D 4 HOH A 202 704 202 HOH HOH . D 4 HOH A 203 705 203 HOH HOH . D 4 HOH A 204 706 204 HOH HOH . D 4 HOH A 205 707 205 HOH HOH . D 4 HOH A 206 708 206 HOH HOH . D 4 HOH A 207 709 207 HOH HOH . D 4 HOH A 208 710 208 HOH HOH . D 4 HOH A 209 711 209 HOH HOH . D 4 HOH A 210 712 210 HOH HOH . D 4 HOH A 211 713 211 HOH HOH . D 4 HOH A 212 714 212 HOH HOH . D 4 HOH A 213 715 213 HOH HOH . D 4 HOH A 214 716 214 HOH HOH . D 4 HOH A 215 717 215 HOH HOH . D 4 HOH A 216 718 216 HOH HOH . D 4 HOH A 217 719 217 HOH HOH . D 4 HOH A 218 720 218 HOH HOH . D 4 HOH A 219 721 219 HOH HOH . D 4 HOH A 220 722 220 HOH HOH . D 4 HOH A 221 723 221 HOH HOH . D 4 HOH A 222 724 222 HOH HOH . D 4 HOH A 223 725 223 HOH HOH . D 4 HOH A 224 726 224 HOH HOH . D 4 HOH A 225 727 225 HOH HOH . D 4 HOH A 226 728 226 HOH HOH . D 4 HOH A 227 729 227 HOH HOH . D 4 HOH A 228 730 228 HOH HOH . D 4 HOH A 229 731 229 HOH HOH . D 4 HOH A 230 732 230 HOH HOH . D 4 HOH A 231 733 231 HOH HOH . D 4 HOH A 232 734 232 HOH HOH . D 4 HOH A 233 735 233 HOH HOH . D 4 HOH A 234 736 234 HOH HOH . D 4 HOH A 235 737 235 HOH HOH . D 4 HOH A 236 738 236 HOH HOH . D 4 HOH A 237 739 237 HOH HOH . D 4 HOH A 238 740 238 HOH HOH . D 4 HOH A 239 741 239 HOH HOH . D 4 HOH A 240 742 240 HOH HOH . D 4 HOH A 241 743 241 HOH HOH . D 4 HOH A 242 744 242 HOH HOH . D 4 HOH A 243 745 243 HOH HOH . D 4 HOH A 244 746 244 HOH HOH . D 4 HOH A 245 747 245 HOH HOH . D 4 HOH A 246 748 246 HOH HOH . D 4 HOH A 247 749 247 HOH HOH . D 4 HOH A 248 750 248 HOH HOH . D 4 HOH A 249 751 249 HOH HOH . D 4 HOH A 250 752 250 HOH HOH . D 4 HOH A 251 753 251 HOH HOH . D 4 HOH A 252 754 252 HOH HOH . D 4 HOH A 253 755 253 HOH HOH . D 4 HOH A 254 756 254 HOH HOH . D 4 HOH A 255 757 255 HOH HOH . D 4 HOH A 256 758 256 HOH HOH . D 4 HOH A 257 759 257 HOH HOH . D 4 HOH A 258 760 258 HOH HOH . D 4 HOH A 259 761 259 HOH HOH . D 4 HOH A 260 762 260 HOH HOH . D 4 HOH A 261 763 261 HOH HOH . D 4 HOH A 262 764 262 HOH HOH . D 4 HOH A 263 765 263 HOH HOH . D 4 HOH A 264 766 264 HOH HOH . D 4 HOH A 265 767 265 HOH HOH . D 4 HOH A 266 768 266 HOH HOH . D 4 HOH A 267 769 267 HOH HOH . D 4 HOH A 268 770 268 HOH HOH . D 4 HOH A 269 771 269 HOH HOH . D 4 HOH A 270 772 270 HOH HOH . D 4 HOH A 271 773 271 HOH HOH . D 4 HOH A 272 774 272 HOH HOH . D 4 HOH A 273 775 273 HOH HOH . D 4 HOH A 274 776 274 HOH HOH . D 4 HOH A 275 777 275 HOH HOH . D 4 HOH A 276 778 276 HOH HOH . D 4 HOH A 277 779 277 HOH HOH . D 4 HOH A 278 780 278 HOH HOH . D 4 HOH A 279 781 279 HOH HOH . D 4 HOH A 280 782 280 HOH HOH . D 4 HOH A 281 783 281 HOH HOH . D 4 HOH A 282 784 282 HOH HOH . D 4 HOH A 283 785 283 HOH HOH . D 4 HOH A 284 786 284 HOH HOH . D 4 HOH A 285 787 285 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C NBN . . . C 3 52.147 9.286 20.871 1 17.73 ? C NBN 502 A 1 HETATM 2 N N NBN . . . C 3 52.251 8.223 21.061 1 14.61 ? N NBN 502 A 1 HETATM 3 C C1 NBN . . . C 3 51.427 6.913 21.278 1 17.55 ? C1 NBN 502 A 1 HETATM 4 C C2 NBN . . . C 3 50.405 7.069 22.394 1 16.38 ? C2 NBN 502 A 1 HETATM 5 C C3 NBN . . . C 3 51.05 7.252 23.713 1 17.63 ? C3 NBN 502 A 1 HETATM 6 C C4 NBN . . . C 3 50.043 7.711 24.729 1 16.8 ? C4 NBN 502 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #