data_1GEM # _model_server_result.job_id i8zb6cU6hNLRDzcHxgzDgw _model_server_result.datetime_utc '2024-10-18 16:23:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1gem # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":418}' # _entry.id 1GEM # _exptl.entry_id 1GEM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 83.132 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-BUTYL ISOCYANIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1GEM _cell.length_a 108.89 _cell.length_b 104.17 _cell.length_c 36.14 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1GEM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 358 A CYS 357 1_555 B FE HEM . A HEM 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc2 B FE HEM . A HEM 417 1_555 C C NBN . A NBN 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.822 ? metalc ? metalc3 B FE HEM . A HEM 417 1_555 C N NBN . A NBN 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.789 ? # _chem_comp.formula 'C5 H9 N' _chem_comp.formula_weight 83.132 _chem_comp.id NBN _chem_comp.mon_nstd_flag . _chem_comp.name 'N-BUTYL ISOCYANIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C N NBN trip 319 n n N C1 NBN sing 320 n n C1 C2 NBN sing 321 n n C1 H11 NBN sing 322 n n C1 H12 NBN sing 323 n n C2 C3 NBN sing 324 n n C2 H21 NBN sing 325 n n C2 H22 NBN sing 326 n n C3 C4 NBN sing 327 n n C3 H31 NBN sing 328 n n C3 H32 NBN sing 329 n n C4 H41 NBN sing 330 n n C4 H42 NBN sing 331 n n C4 H43 NBN sing 332 n n # _atom_sites.entry_id 1GEM _atom_sites.fract_transf_matrix[1][1] 0.009184 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0096 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02767 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 417 417 HEM HEM . C 3 NBN A 1 418 418 NBN NBN . D 4 HOH A 1 419 1 HOH HOH . D 4 HOH A 2 420 2 HOH HOH . D 4 HOH A 3 421 3 HOH HOH . D 4 HOH A 4 422 4 HOH HOH . D 4 HOH A 5 423 5 HOH HOH . D 4 HOH A 6 424 6 HOH HOH . D 4 HOH A 7 425 7 HOH HOH . D 4 HOH A 8 426 8 HOH HOH . D 4 HOH A 9 427 9 HOH HOH . D 4 HOH A 10 428 10 HOH HOH . D 4 HOH A 11 429 11 HOH HOH . D 4 HOH A 12 430 12 HOH HOH . D 4 HOH A 13 431 13 HOH HOH . D 4 HOH A 14 432 14 HOH HOH . D 4 HOH A 15 433 15 HOH HOH . D 4 HOH A 16 434 16 HOH HOH . D 4 HOH A 17 435 17 HOH HOH . D 4 HOH A 18 436 18 HOH HOH . D 4 HOH A 19 437 19 HOH HOH . D 4 HOH A 20 438 20 HOH HOH . D 4 HOH A 21 439 21 HOH HOH . D 4 HOH A 22 440 22 HOH HOH . D 4 HOH A 23 441 23 HOH HOH . D 4 HOH A 24 442 24 HOH HOH . D 4 HOH A 25 443 25 HOH HOH . D 4 HOH A 26 444 26 HOH HOH . D 4 HOH A 27 445 27 HOH HOH . D 4 HOH A 28 446 28 HOH HOH . D 4 HOH A 29 447 29 HOH HOH . D 4 HOH A 30 448 30 HOH HOH . D 4 HOH A 31 449 31 HOH HOH . D 4 HOH A 32 450 32 HOH HOH . D 4 HOH A 33 451 33 HOH HOH . D 4 HOH A 34 452 34 HOH HOH . D 4 HOH A 35 453 35 HOH HOH . D 4 HOH A 36 454 36 HOH HOH . D 4 HOH A 37 455 37 HOH HOH . D 4 HOH A 38 456 38 HOH HOH . D 4 HOH A 39 457 39 HOH HOH . D 4 HOH A 40 458 40 HOH HOH . D 4 HOH A 41 459 41 HOH HOH . D 4 HOH A 42 460 42 HOH HOH . D 4 HOH A 43 461 43 HOH HOH . D 4 HOH A 44 462 44 HOH HOH . D 4 HOH A 45 463 45 HOH HOH . D 4 HOH A 46 464 46 HOH HOH . D 4 HOH A 47 465 47 HOH HOH . D 4 HOH A 48 466 48 HOH HOH . D 4 HOH A 49 467 49 HOH HOH . D 4 HOH A 50 468 50 HOH HOH . D 4 HOH A 51 469 51 HOH HOH . D 4 HOH A 52 470 52 HOH HOH . D 4 HOH A 53 471 53 HOH HOH . D 4 HOH A 54 472 54 HOH HOH . D 4 HOH A 55 473 55 HOH HOH . D 4 HOH A 56 474 56 HOH HOH . D 4 HOH A 57 475 57 HOH HOH . D 4 HOH A 58 476 58 HOH HOH . D 4 HOH A 59 477 59 HOH HOH . D 4 HOH A 60 478 60 HOH HOH . D 4 HOH A 61 479 61 HOH HOH . D 4 HOH A 62 480 62 HOH HOH . D 4 HOH A 63 481 63 HOH HOH . D 4 HOH A 64 482 64 HOH HOH . D 4 HOH A 65 483 65 HOH HOH . D 4 HOH A 66 484 66 HOH HOH . D 4 HOH A 67 485 67 HOH HOH . D 4 HOH A 68 486 68 HOH HOH . D 4 HOH A 69 487 69 HOH HOH . D 4 HOH A 70 488 70 HOH HOH . D 4 HOH A 71 489 71 HOH HOH . D 4 HOH A 72 490 72 HOH HOH . D 4 HOH A 73 491 73 HOH HOH . D 4 HOH A 74 492 74 HOH HOH . D 4 HOH A 75 493 75 HOH HOH . D 4 HOH A 76 494 76 HOH HOH . D 4 HOH A 77 495 77 HOH HOH . D 4 HOH A 78 496 78 HOH HOH . D 4 HOH A 79 497 79 HOH HOH . D 4 HOH A 80 498 80 HOH HOH . D 4 HOH A 81 499 81 HOH HOH . D 4 HOH A 82 500 82 HOH HOH . D 4 HOH A 83 501 83 HOH HOH . D 4 HOH A 84 502 84 HOH HOH . D 4 HOH A 85 503 85 HOH HOH . D 4 HOH A 86 504 86 HOH HOH . D 4 HOH A 87 505 87 HOH HOH . D 4 HOH A 88 506 88 HOH HOH . D 4 HOH A 89 507 89 HOH HOH . D 4 HOH A 90 508 90 HOH HOH . D 4 HOH A 91 509 91 HOH HOH . D 4 HOH A 92 510 92 HOH HOH . D 4 HOH A 93 511 93 HOH HOH . D 4 HOH A 94 512 94 HOH HOH . D 4 HOH A 95 513 95 HOH HOH . D 4 HOH A 96 514 96 HOH HOH . D 4 HOH A 97 515 97 HOH HOH . D 4 HOH A 98 516 98 HOH HOH . D 4 HOH A 99 517 99 HOH HOH . D 4 HOH A 100 518 100 HOH HOH . D 4 HOH A 101 519 101 HOH HOH . D 4 HOH A 102 520 102 HOH HOH . D 4 HOH A 103 521 103 HOH HOH . D 4 HOH A 104 522 104 HOH HOH . D 4 HOH A 105 523 105 HOH HOH . D 4 HOH A 106 524 106 HOH HOH . D 4 HOH A 107 525 107 HOH HOH . D 4 HOH A 108 526 108 HOH HOH . D 4 HOH A 109 527 109 HOH HOH . D 4 HOH A 110 528 110 HOH HOH . D 4 HOH A 111 529 111 HOH HOH . D 4 HOH A 112 530 112 HOH HOH . D 4 HOH A 113 531 113 HOH HOH . D 4 HOH A 114 532 114 HOH HOH . D 4 HOH A 115 533 115 HOH HOH . D 4 HOH A 116 534 116 HOH HOH . D 4 HOH A 117 535 117 HOH HOH . D 4 HOH A 118 536 118 HOH HOH . D 4 HOH A 119 537 119 HOH HOH . D 4 HOH A 120 538 120 HOH HOH . D 4 HOH A 121 539 121 HOH HOH . D 4 HOH A 122 540 122 HOH HOH . D 4 HOH A 123 541 123 HOH HOH . D 4 HOH A 124 542 124 HOH HOH . D 4 HOH A 125 543 125 HOH HOH . D 4 HOH A 126 544 126 HOH HOH . D 4 HOH A 127 545 127 HOH HOH . D 4 HOH A 128 546 128 HOH HOH . D 4 HOH A 129 547 129 HOH HOH . D 4 HOH A 130 548 130 HOH HOH . D 4 HOH A 131 549 131 HOH HOH . D 4 HOH A 132 550 132 HOH HOH . D 4 HOH A 133 551 133 HOH HOH . D 4 HOH A 134 552 134 HOH HOH . D 4 HOH A 135 553 135 HOH HOH . D 4 HOH A 136 554 136 HOH HOH . D 4 HOH A 137 555 137 HOH HOH . D 4 HOH A 138 556 138 HOH HOH . D 4 HOH A 139 557 139 HOH HOH . D 4 HOH A 140 558 140 HOH HOH . D 4 HOH A 141 559 141 HOH HOH . D 4 HOH A 142 560 142 HOH HOH . D 4 HOH A 143 561 143 HOH HOH . D 4 HOH A 144 562 144 HOH HOH . D 4 HOH A 145 563 145 HOH HOH . D 4 HOH A 146 564 146 HOH HOH . D 4 HOH A 147 565 147 HOH HOH . D 4 HOH A 148 566 148 HOH HOH . D 4 HOH A 149 567 149 HOH HOH . D 4 HOH A 150 568 150 HOH HOH . D 4 HOH A 151 569 151 HOH HOH . D 4 HOH A 152 570 152 HOH HOH . D 4 HOH A 153 571 153 HOH HOH . D 4 HOH A 154 572 154 HOH HOH . D 4 HOH A 155 573 155 HOH HOH . D 4 HOH A 156 574 156 HOH HOH . D 4 HOH A 157 575 157 HOH HOH . D 4 HOH A 158 576 158 HOH HOH . D 4 HOH A 159 577 159 HOH HOH . D 4 HOH A 160 578 160 HOH HOH . D 4 HOH A 161 579 161 HOH HOH . D 4 HOH A 162 580 162 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C NBN . . . C 3 48.226 46.461 10.669 1 37.57 ? C NBN 418 A 1 HETATM 2 N N NBN . . . C 3 47.917 45.937 11.547 1 50.93 ? N NBN 418 A 1 HETATM 3 C C1 NBN . . . C 3 47.519 46.184 13.029 1 49.86 ? C1 NBN 418 A 1 HETATM 4 C C2 NBN . . . C 3 46.482 45.179 13.479 1 51.26 ? C2 NBN 418 A 1 HETATM 5 C C3 NBN . . . C 3 47.052 43.818 13.589 1 51.03 ? C3 NBN 418 A 1 HETATM 6 C C4 NBN . . . C 3 45.98 42.783 13.36 1 53.08 ? C4 NBN 418 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 353 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #