data_1GFE # _model_server_result.job_id q7JEuo0jyz-NgGf3JSUISw _model_server_result.datetime_utc '2024-11-09 02:23:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1gfe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 1GFE # _exptl.entry_id 1GFE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1GFE _cell.length_a 56.5 _cell.length_b 61.56 _cell.length_c 32.4 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1GFE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 128 A CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 116 A CYS 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf3 A SG CYS 65 A CYS 65 1_555 A SG CYS 81 A CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 77 A CYS 77 1_555 A SG CYS 95 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc1 A O SER 61 A SER 61 1_554 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc2 A O CYS 65 A CYS 65 1_554 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc3 A O VAL 74 A VAL 74 1_554 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc4 C O HOH . A HOH 172 1_554 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc5 C O HOH . A HOH 224 1_554 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1GFE _atom_sites.fract_transf_matrix[1][1] 0.017699 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016244 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.030864 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 601 601 NA NA . C 3 HOH A 1 131 131 HOH H2O . C 3 HOH A 2 132 132 HOH H2O . C 3 HOH A 3 133 133 HOH H2O . C 3 HOH A 4 134 134 HOH H2O . C 3 HOH A 5 135 135 HOH H2O . C 3 HOH A 6 136 136 HOH H2O . C 3 HOH A 7 137 137 HOH H2O . C 3 HOH A 8 138 138 HOH H2O . C 3 HOH A 9 139 139 HOH H2O . C 3 HOH A 10 140 140 HOH H2O . C 3 HOH A 11 141 141 HOH H2O . C 3 HOH A 12 142 142 HOH H2O . C 3 HOH A 13 143 143 HOH H2O . C 3 HOH A 14 144 144 HOH H2O . C 3 HOH A 15 145 145 HOH H2O . C 3 HOH A 16 146 146 HOH H2O . C 3 HOH A 17 147 147 HOH H2O . C 3 HOH A 18 148 148 HOH H2O . C 3 HOH A 19 149 149 HOH H2O . C 3 HOH A 20 150 150 HOH H2O . C 3 HOH A 21 151 151 HOH H2O . C 3 HOH A 22 152 152 HOH H2O . C 3 HOH A 23 153 153 HOH H2O . C 3 HOH A 24 154 154 HOH H2O . C 3 HOH A 25 155 155 HOH H2O . C 3 HOH A 26 156 156 HOH H2O . C 3 HOH A 27 157 157 HOH H2O . C 3 HOH A 28 158 158 HOH H2O . C 3 HOH A 29 159 159 HOH H2O . C 3 HOH A 30 160 160 HOH H2O . C 3 HOH A 31 161 161 HOH H2O . C 3 HOH A 32 162 162 HOH H2O . C 3 HOH A 33 163 163 HOH H2O . C 3 HOH A 34 164 164 HOH H2O . C 3 HOH A 35 165 165 HOH H2O . C 3 HOH A 36 166 166 HOH H2O . C 3 HOH A 37 167 167 HOH H2O . C 3 HOH A 38 168 168 HOH H2O . C 3 HOH A 39 169 169 HOH H2O . C 3 HOH A 40 170 170 HOH H2O . C 3 HOH A 41 171 171 HOH H2O . C 3 HOH A 42 172 172 HOH H2O . C 3 HOH A 43 173 173 HOH H2O . C 3 HOH A 44 174 174 HOH H2O . C 3 HOH A 45 175 175 HOH H2O . C 3 HOH A 46 176 176 HOH H2O . C 3 HOH A 47 177 177 HOH H2O . C 3 HOH A 48 178 178 HOH H2O . C 3 HOH A 49 179 179 HOH H2O . C 3 HOH A 50 180 180 HOH H2O . C 3 HOH A 51 181 181 HOH H2O . C 3 HOH A 52 182 182 HOH H2O . C 3 HOH A 53 183 183 HOH H2O . C 3 HOH A 54 184 184 HOH H2O . C 3 HOH A 55 185 185 HOH H2O . C 3 HOH A 56 186 186 HOH H2O . C 3 HOH A 57 187 187 HOH H2O . C 3 HOH A 58 188 188 HOH H2O . C 3 HOH A 59 189 189 HOH H2O . C 3 HOH A 60 190 190 HOH H2O . C 3 HOH A 61 191 191 HOH H2O . C 3 HOH A 62 192 192 HOH H2O . C 3 HOH A 63 193 193 HOH H2O . C 3 HOH A 64 194 194 HOH H2O . C 3 HOH A 65 195 195 HOH H2O . C 3 HOH A 66 196 196 HOH H2O . C 3 HOH A 67 197 197 HOH H2O . C 3 HOH A 68 198 198 HOH H2O . C 3 HOH A 69 199 199 HOH H2O . C 3 HOH A 70 200 200 HOH H2O . C 3 HOH A 71 201 201 HOH H2O . C 3 HOH A 72 202 202 HOH H2O . C 3 HOH A 73 203 203 HOH H2O . C 3 HOH A 74 204 204 HOH H2O . C 3 HOH A 75 205 205 HOH H2O . C 3 HOH A 76 206 206 HOH H2O . C 3 HOH A 77 207 207 HOH H2O . C 3 HOH A 78 208 208 HOH H2O . C 3 HOH A 79 209 209 HOH H2O . C 3 HOH A 80 210 210 HOH H2O . C 3 HOH A 81 211 211 HOH H2O . C 3 HOH A 82 212 212 HOH H2O . C 3 HOH A 83 213 213 HOH H2O . C 3 HOH A 84 214 214 HOH H2O . C 3 HOH A 85 215 215 HOH H2O . C 3 HOH A 86 216 216 HOH H2O . C 3 HOH A 87 217 217 HOH H2O . C 3 HOH A 88 218 218 HOH H2O . C 3 HOH A 89 219 219 HOH H2O . C 3 HOH A 90 220 220 HOH H2O . C 3 HOH A 91 221 221 HOH H2O . C 3 HOH A 92 222 222 HOH H2O . C 3 HOH A 93 223 223 HOH H2O . C 3 HOH A 94 224 224 HOH H2O . C 3 HOH A 95 225 225 HOH H2O . C 3 HOH A 96 226 226 HOH H2O . C 3 HOH A 97 227 227 HOH H2O . C 3 HOH A 98 228 228 HOH H2O . C 3 HOH A 99 229 229 HOH H2O . C 3 HOH A 100 230 230 HOH H2O . C 3 HOH A 101 231 231 HOH H2O . C 3 HOH A 102 232 232 HOH H2O . C 3 HOH A 103 233 233 HOH H2O . C 3 HOH A 104 234 234 HOH H2O . C 3 HOH A 105 235 235 HOH H2O . C 3 HOH A 106 236 236 HOH H2O . C 3 HOH A 107 237 237 HOH H2O . C 3 HOH A 108 238 238 HOH H2O . C 3 HOH A 109 239 239 HOH H2O . C 3 HOH A 110 240 240 HOH H2O . C 3 HOH A 111 241 241 HOH H2O . C 3 HOH A 112 242 242 HOH H2O . C 3 HOH A 113 243 243 HOH H2O . C 3 HOH A 114 244 244 HOH H2O . C 3 HOH A 115 245 245 HOH H2O . C 3 HOH A 116 246 246 HOH H2O . C 3 HOH A 117 247 247 HOH H2O . C 3 HOH A 118 248 248 HOH H2O . C 3 HOH A 119 249 249 HOH H2O . C 3 HOH A 120 250 250 HOH H2O . C 3 HOH A 121 251 251 HOH H2O . C 3 HOH A 122 252 252 HOH H2O . C 3 HOH A 123 253 253 HOH H2O . C 3 HOH A 124 254 254 HOH H2O . C 3 HOH A 125 255 255 HOH H2O . C 3 HOH A 126 256 256 HOH H2O . C 3 HOH A 127 257 257 HOH H2O . C 3 HOH A 128 258 258 HOH H2O . C 3 HOH A 129 259 259 HOH H2O . C 3 HOH A 130 260 260 HOH H2O . C 3 HOH A 131 261 261 HOH H2O . C 3 HOH A 132 262 262 HOH H2O . C 3 HOH A 133 263 263 HOH H2O . C 3 HOH A 134 264 264 HOH H2O . C 3 HOH A 135 265 265 HOH H2O . C 3 HOH A 136 266 266 HOH H2O . C 3 HOH A 137 267 267 HOH H2O . C 3 HOH A 138 268 268 HOH H2O . C 3 HOH A 139 269 269 HOH H2O . C 3 HOH A 140 270 270 HOH H2O . C 3 HOH A 141 271 271 HOH H2O . C 3 HOH A 142 272 272 HOH H2O . C 3 HOH A 143 273 273 HOH H2O . C 3 HOH A 144 274 274 HOH H2O . C 3 HOH A 145 275 275 HOH H2O . C 3 HOH A 146 276 276 HOH H2O . C 3 HOH A 147 277 277 HOH H2O . C 3 HOH A 148 278 278 HOH H2O . C 3 HOH A 149 279 279 HOH H2O . C 3 HOH A 150 280 280 HOH H2O . C 3 HOH A 151 281 281 HOH H2O . C 3 HOH A 152 282 282 HOH H2O . C 3 HOH A 153 283 283 HOH H2O . C 3 HOH A 154 284 284 HOH H2O . C 3 HOH A 155 285 285 HOH H2O . C 3 HOH A 156 286 286 HOH H2O . C 3 HOH A 157 287 287 HOH H2O . C 3 HOH A 158 288 288 HOH H2O . C 3 HOH A 159 289 289 HOH H2O . C 3 HOH A 160 290 290 HOH H2O . C 3 HOH A 161 291 291 HOH H2O . C 3 HOH A 162 292 292 HOH H2O . C 3 HOH A 163 293 293 HOH H2O . C 3 HOH A 164 294 294 HOH H2O . C 3 HOH A 165 295 295 HOH H2O . C 3 HOH A 166 296 296 HOH H2O . C 3 HOH A 167 298 298 HOH H2O . C 3 HOH A 168 299 299 HOH H2O . C 3 HOH A 169 300 300 HOH H2O . C 3 HOH A 170 301 301 HOH H2O . C 3 HOH A 171 302 302 HOH H2O . C 3 HOH A 172 303 303 HOH H2O . C 3 HOH A 173 304 304 HOH H2O . C 3 HOH A 174 305 305 HOH H2O . C 3 HOH A 175 306 306 HOH H2O . C 3 HOH A 176 307 307 HOH H2O . C 3 HOH A 177 308 308 HOH H2O . C 3 HOH A 178 309 309 HOH H2O . C 3 HOH A 179 310 310 HOH H2O . C 3 HOH A 180 311 311 HOH H2O . C 3 HOH A 181 312 312 HOH H2O . C 3 HOH A 182 313 313 HOH H2O . C 3 HOH A 183 314 314 HOH H2O . C 3 HOH A 184 315 315 HOH H2O . C 3 HOH A 185 316 316 HOH H2O . C 3 HOH A 186 317 317 HOH H2O . C 3 HOH A 187 318 318 HOH H2O . C 3 HOH A 188 319 319 HOH H2O . C 3 HOH A 189 320 320 HOH H2O . C 3 HOH A 190 321 321 HOH H2O . C 3 HOH A 191 322 322 HOH H2O . C 3 HOH A 192 323 323 HOH H2O . C 3 HOH A 193 324 324 HOH H2O . C 3 HOH A 194 325 325 HOH H2O . C 3 HOH A 195 326 326 HOH H2O . C 3 HOH A 196 327 327 HOH H2O . C 3 HOH A 197 328 328 HOH H2O . C 3 HOH A 198 329 329 HOH H2O . C 3 HOH A 199 330 330 HOH H2O . C 3 HOH A 200 331 331 HOH H2O . C 3 HOH A 201 332 332 HOH H2O . C 3 HOH A 202 333 333 HOH H2O . C 3 HOH A 203 334 334 HOH H2O . C 3 HOH A 204 335 335 HOH H2O . C 3 HOH A 205 336 336 HOH H2O . C 3 HOH A 206 337 337 HOH H2O . C 3 HOH A 207 338 338 HOH H2O . C 3 HOH A 208 339 339 HOH H2O . C 3 HOH A 209 340 340 HOH H2O . C 3 HOH A 210 341 341 HOH H2O . C 3 HOH A 211 342 342 HOH H2O . C 3 HOH A 212 343 343 HOH H2O . C 3 HOH A 213 344 344 HOH H2O . C 3 HOH A 214 345 345 HOH H2O . C 3 HOH A 215 346 346 HOH H2O . C 3 HOH A 216 347 347 HOH H2O . C 3 HOH A 217 348 348 HOH H2O . C 3 HOH A 218 349 349 HOH H2O . C 3 HOH A 219 350 350 HOH H2O . C 3 HOH A 220 351 351 HOH H2O . C 3 HOH A 221 352 352 HOH H2O . C 3 HOH A 222 353 353 HOH H2O . C 3 HOH A 223 354 354 HOH H2O . C 3 HOH A 224 355 355 HOH H2O . C 3 HOH A 225 356 356 HOH H2O . C 3 HOH A 226 357 357 HOH H2O . C 3 HOH A 227 358 358 HOH H2O . C 3 HOH A 228 359 359 HOH H2O . C 3 HOH A 229 360 360 HOH H2O . C 3 HOH A 230 361 361 HOH H2O . C 3 HOH A 231 362 362 HOH H2O . C 3 HOH A 232 363 363 HOH H2O . C 3 HOH A 233 364 364 HOH H2O . C 3 HOH A 234 365 365 HOH H2O . C 3 HOH A 235 366 366 HOH H2O . C 3 HOH A 236 367 367 HOH H2O . C 3 HOH A 237 368 368 HOH H2O . C 3 HOH A 238 369 369 HOH H2O . C 3 HOH A 239 370 370 HOH H2O . C 3 HOH A 240 371 371 HOH H2O . C 3 HOH A 241 372 372 HOH H2O . C 3 HOH A 242 373 373 HOH H2O . C 3 HOH A 243 374 374 HOH H2O . C 3 HOH A 244 375 375 HOH H2O . C 3 HOH A 245 376 376 HOH H2O . C 3 HOH A 246 377 377 HOH H2O . C 3 HOH A 247 378 378 HOH H2O . C 3 HOH A 248 379 379 HOH H2O . C 3 HOH A 249 380 380 HOH H2O . C 3 HOH A 250 381 381 HOH H2O . C 3 HOH A 251 382 382 HOH H2O . C 3 HOH A 252 383 383 HOH H2O . C 3 HOH A 253 384 384 HOH H2O . C 3 HOH A 254 385 385 HOH H2O . C 3 HOH A 255 386 386 HOH H2O . C 3 HOH A 256 387 387 HOH H2O . C 3 HOH A 257 388 388 HOH H2O . C 3 HOH A 258 389 389 HOH H2O . C 3 HOH A 259 390 390 HOH H2O . C 3 HOH A 260 391 391 HOH H2O . C 3 HOH A 261 392 392 HOH H2O . C 3 HOH A 262 393 393 HOH H2O . C 3 HOH A 263 394 394 HOH H2O . C 3 HOH A 264 395 395 HOH H2O . C 3 HOH A 265 396 396 HOH H2O . C 3 HOH A 266 397 397 HOH H2O . C 3 HOH A 267 398 398 HOH H2O . C 3 HOH A 268 399 399 HOH H2O . C 3 HOH A 269 400 400 HOH H2O . C 3 HOH A 270 401 401 HOH H2O . C 3 HOH A 271 402 402 HOH H2O . C 3 HOH A 272 403 403 HOH H2O . C 3 HOH A 273 404 404 HOH H2O . C 3 HOH A 274 405 405 HOH H2O . C 3 HOH A 275 406 406 HOH H2O . C 3 HOH A 276 407 407 HOH H2O . C 3 HOH A 277 408 408 HOH H2O . C 3 HOH A 278 409 409 HOH H2O . C 3 HOH A 279 410 410 HOH H2O . C 3 HOH A 280 411 411 HOH H2O . C 3 HOH A 281 412 412 HOH H2O . C 3 HOH A 282 413 413 HOH H2O . C 3 HOH A 283 414 414 HOH H2O . C 3 HOH A 284 415 415 HOH H2O . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 5.894 _atom_site.Cartn_y 6.679 _atom_site.Cartn_z 6.753 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 11.63 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 601 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #