data_1GFY # _model_server_result.job_id 9JCjSkPl6ATcPaC7hgegLw _model_server_result.datetime_utc '2024-10-12 19:21:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1gfy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 1GFY # _exptl.entry_id 1GFY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 287.312 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-(OXALYL-AMINO)-4,7-DIHYDRO-5H-THIENO[2,3-C]THIOPYRAN-3-CARBOXYLIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1GFY _cell.length_a 88.195 _cell.length_b 88.195 _cell.length_c 103.728 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1GFY _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H9 N O5 S2' _chem_comp.formula_weight 287.312 _chem_comp.id COL _chem_comp.mon_nstd_flag . _chem_comp.name '2-(OXALYL-AMINO)-4,7-DIHYDRO-5H-THIENO[2,3-C]THIOPYRAN-3-CARBOXYLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S1 C2 COL sing 70 n n S1 C6 COL sing 71 n n C2 C3 COL sing 72 n n C2 H21 COL sing 73 n n C2 H22A COL sing 74 n n C3 C4 COL doub 75 n y C3 S13 COL sing 76 n y C4 C5 COL sing 77 n n C4 C15 COL sing 78 n y C5 C6 COL sing 79 n n C5 H51 COL sing 80 n n C5 H52 COL sing 81 n n C6 H61 COL sing 82 n n C6 H62 COL sing 83 n n S13 C14 COL sing 84 n y C14 C15 COL doub 85 n y C14 N19 COL sing 86 n n C15 C16 COL sing 87 n n C16 O17 COL sing 88 n n C16 O18 COL doub 89 n n O17 H17 COL sing 90 n n N19 C20 COL sing 91 n n N19 H19 COL sing 92 n n C20 C21 COL sing 93 n n C20 O24 COL doub 94 n n C21 O22 COL sing 95 n n C21 O23 COL doub 96 n n O22 H22 COL sing 97 n n # _atom_sites.entry_id 1GFY _atom_sites.fract_transf_matrix[1][1] 0.011338 _atom_sites.fract_transf_matrix[1][2] 0.006546 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013092 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00964 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 COL A 1 301 1 COL COM . C 3 HOH A 1 302 1 HOH HOH . C 3 HOH A 2 303 2 HOH HOH . C 3 HOH A 3 304 3 HOH HOH . C 3 HOH A 4 305 4 HOH HOH . C 3 HOH A 5 306 5 HOH HOH . C 3 HOH A 6 307 6 HOH HOH . C 3 HOH A 7 308 7 HOH HOH . C 3 HOH A 8 309 8 HOH HOH . C 3 HOH A 9 310 9 HOH HOH . C 3 HOH A 10 311 10 HOH HOH . C 3 HOH A 11 312 11 HOH HOH . C 3 HOH A 12 313 12 HOH HOH . C 3 HOH A 13 314 13 HOH HOH . C 3 HOH A 14 315 14 HOH HOH . C 3 HOH A 15 316 15 HOH HOH . C 3 HOH A 16 317 17 HOH HOH . C 3 HOH A 17 318 18 HOH HOH . C 3 HOH A 18 319 19 HOH HOH . C 3 HOH A 19 320 20 HOH HOH . C 3 HOH A 20 321 21 HOH HOH . C 3 HOH A 21 322 22 HOH HOH . C 3 HOH A 22 323 23 HOH HOH . C 3 HOH A 23 324 24 HOH HOH . C 3 HOH A 24 325 25 HOH HOH . C 3 HOH A 25 326 26 HOH HOH . C 3 HOH A 26 327 27 HOH HOH . C 3 HOH A 27 328 29 HOH HOH . C 3 HOH A 28 329 30 HOH HOH . C 3 HOH A 29 330 31 HOH HOH . C 3 HOH A 30 331 32 HOH HOH . C 3 HOH A 31 332 33 HOH HOH . C 3 HOH A 32 333 34 HOH HOH . C 3 HOH A 33 334 35 HOH HOH . C 3 HOH A 34 335 36 HOH HOH . C 3 HOH A 35 336 37 HOH HOH . C 3 HOH A 36 337 38 HOH HOH . C 3 HOH A 37 338 39 HOH HOH . C 3 HOH A 38 339 40 HOH HOH . C 3 HOH A 39 340 41 HOH HOH . C 3 HOH A 40 341 42 HOH HOH . C 3 HOH A 41 342 43 HOH HOH . C 3 HOH A 42 343 44 HOH HOH . C 3 HOH A 43 344 45 HOH HOH . C 3 HOH A 44 345 46 HOH HOH . C 3 HOH A 45 346 47 HOH HOH . C 3 HOH A 46 347 48 HOH HOH . C 3 HOH A 47 348 49 HOH HOH . C 3 HOH A 48 349 50 HOH HOH . C 3 HOH A 49 350 51 HOH HOH . C 3 HOH A 50 351 52 HOH HOH . C 3 HOH A 51 352 53 HOH HOH . C 3 HOH A 52 353 54 HOH HOH . C 3 HOH A 53 354 55 HOH HOH . C 3 HOH A 54 355 56 HOH HOH . C 3 HOH A 55 356 57 HOH HOH . C 3 HOH A 56 357 58 HOH HOH . C 3 HOH A 57 358 59 HOH HOH . C 3 HOH A 58 359 60 HOH HOH . C 3 HOH A 59 360 62 HOH HOH . C 3 HOH A 60 361 63 HOH HOH . C 3 HOH A 61 362 64 HOH HOH . C 3 HOH A 62 363 65 HOH HOH . C 3 HOH A 63 364 66 HOH HOH . C 3 HOH A 64 365 67 HOH HOH . C 3 HOH A 65 366 68 HOH HOH . C 3 HOH A 66 367 69 HOH HOH . C 3 HOH A 67 368 70 HOH HOH . C 3 HOH A 68 369 71 HOH HOH . C 3 HOH A 69 370 72 HOH HOH . C 3 HOH A 70 371 73 HOH HOH . C 3 HOH A 71 372 74 HOH HOH . C 3 HOH A 72 373 75 HOH HOH . C 3 HOH A 73 374 76 HOH HOH . C 3 HOH A 74 375 77 HOH HOH . C 3 HOH A 75 376 78 HOH HOH . C 3 HOH A 76 377 79 HOH HOH . C 3 HOH A 77 378 80 HOH HOH . C 3 HOH A 78 379 81 HOH HOH . C 3 HOH A 79 380 82 HOH HOH . C 3 HOH A 80 381 83 HOH HOH . C 3 HOH A 81 382 84 HOH HOH . C 3 HOH A 82 383 85 HOH HOH . C 3 HOH A 83 384 86 HOH HOH . C 3 HOH A 84 385 87 HOH HOH . C 3 HOH A 85 386 88 HOH HOH . C 3 HOH A 86 387 89 HOH HOH . C 3 HOH A 87 388 90 HOH HOH . C 3 HOH A 88 389 91 HOH HOH . C 3 HOH A 89 390 92 HOH HOH . C 3 HOH A 90 391 93 HOH HOH . C 3 HOH A 91 392 94 HOH HOH . C 3 HOH A 92 393 95 HOH HOH . C 3 HOH A 93 394 96 HOH HOH . C 3 HOH A 94 395 97 HOH HOH . C 3 HOH A 95 396 98 HOH HOH . C 3 HOH A 96 397 99 HOH HOH . C 3 HOH A 97 398 100 HOH HOH . C 3 HOH A 98 399 101 HOH HOH . C 3 HOH A 99 400 102 HOH HOH . C 3 HOH A 100 401 103 HOH HOH . C 3 HOH A 101 402 104 HOH HOH . C 3 HOH A 102 403 105 HOH HOH . C 3 HOH A 103 404 106 HOH HOH . C 3 HOH A 104 405 107 HOH HOH . C 3 HOH A 105 406 108 HOH HOH . C 3 HOH A 106 407 109 HOH HOH . C 3 HOH A 107 408 110 HOH HOH . C 3 HOH A 108 409 111 HOH HOH . C 3 HOH A 109 410 112 HOH HOH . C 3 HOH A 110 411 113 HOH HOH . C 3 HOH A 111 412 114 HOH HOH . C 3 HOH A 112 413 115 HOH HOH . C 3 HOH A 113 414 116 HOH HOH . C 3 HOH A 114 415 117 HOH HOH . C 3 HOH A 115 416 118 HOH HOH . C 3 HOH A 116 417 119 HOH HOH . C 3 HOH A 117 418 120 HOH HOH . C 3 HOH A 118 419 121 HOH HOH . C 3 HOH A 119 420 122 HOH HOH . C 3 HOH A 120 421 123 HOH HOH . C 3 HOH A 121 422 124 HOH HOH . C 3 HOH A 122 423 125 HOH HOH . C 3 HOH A 123 424 126 HOH HOH . C 3 HOH A 124 425 127 HOH HOH . C 3 HOH A 125 426 128 HOH HOH . C 3 HOH A 126 427 129 HOH HOH . C 3 HOH A 127 428 130 HOH HOH . C 3 HOH A 128 429 131 HOH HOH . C 3 HOH A 129 430 132 HOH HOH . C 3 HOH A 130 431 133 HOH HOH . C 3 HOH A 131 432 134 HOH HOH . C 3 HOH A 132 433 135 HOH HOH . C 3 HOH A 133 434 136 HOH HOH . C 3 HOH A 134 435 137 HOH HOH . C 3 HOH A 135 436 138 HOH HOH . C 3 HOH A 136 437 139 HOH HOH . C 3 HOH A 137 438 140 HOH HOH . C 3 HOH A 138 439 141 HOH HOH . C 3 HOH A 139 440 142 HOH HOH . C 3 HOH A 140 441 143 HOH HOH . C 3 HOH A 141 442 144 HOH HOH . C 3 HOH A 142 443 145 HOH HOH . C 3 HOH A 143 444 146 HOH HOH . C 3 HOH A 144 445 147 HOH HOH . C 3 HOH A 145 446 148 HOH HOH . C 3 HOH A 146 447 149 HOH HOH . C 3 HOH A 147 448 150 HOH HOH . C 3 HOH A 148 449 151 HOH HOH . C 3 HOH A 149 450 152 HOH HOH . C 3 HOH A 150 451 153 HOH HOH . C 3 HOH A 151 452 154 HOH HOH . C 3 HOH A 152 453 155 HOH HOH . C 3 HOH A 153 454 156 HOH HOH . C 3 HOH A 154 455 157 HOH HOH . C 3 HOH A 155 456 158 HOH HOH . C 3 HOH A 156 457 159 HOH HOH . C 3 HOH A 157 458 160 HOH HOH . C 3 HOH A 158 459 161 HOH HOH . C 3 HOH A 159 460 162 HOH HOH . C 3 HOH A 160 461 163 HOH HOH . C 3 HOH A 161 462 164 HOH HOH . C 3 HOH A 162 463 165 HOH HOH . C 3 HOH A 163 464 166 HOH HOH . C 3 HOH A 164 465 167 HOH HOH . C 3 HOH A 165 466 168 HOH HOH . C 3 HOH A 166 467 169 HOH HOH . C 3 HOH A 167 468 170 HOH HOH . C 3 HOH A 168 469 171 HOH HOH . C 3 HOH A 169 470 172 HOH HOH . C 3 HOH A 170 471 173 HOH HOH . C 3 HOH A 171 472 174 HOH HOH . C 3 HOH A 172 473 175 HOH HOH . C 3 HOH A 173 474 176 HOH HOH . C 3 HOH A 174 475 177 HOH HOH . C 3 HOH A 175 476 178 HOH HOH . C 3 HOH A 176 477 179 HOH HOH . C 3 HOH A 177 478 180 HOH HOH . C 3 HOH A 178 479 181 HOH HOH . C 3 HOH A 179 480 182 HOH HOH . C 3 HOH A 180 481 183 HOH HOH . C 3 HOH A 181 482 184 HOH HOH . C 3 HOH A 182 483 185 HOH HOH . C 3 HOH A 183 484 186 HOH HOH . C 3 HOH A 184 485 187 HOH HOH . C 3 HOH A 185 486 188 HOH HOH . C 3 HOH A 186 487 189 HOH HOH . C 3 HOH A 187 488 190 HOH HOH . C 3 HOH A 188 489 191 HOH HOH . C 3 HOH A 189 490 192 HOH HOH . C 3 HOH A 190 491 193 HOH HOH . C 3 HOH A 191 492 194 HOH HOH . C 3 HOH A 192 493 195 HOH HOH . C 3 HOH A 193 494 196 HOH HOH . C 3 HOH A 194 495 197 HOH HOH . C 3 HOH A 195 496 198 HOH HOH . C 3 HOH A 196 497 199 HOH HOH . C 3 HOH A 197 498 200 HOH HOH . C 3 HOH A 198 499 201 HOH HOH . C 3 HOH A 199 500 202 HOH HOH . C 3 HOH A 200 501 203 HOH HOH . C 3 HOH A 201 502 204 HOH HOH . C 3 HOH A 202 503 205 HOH HOH . C 3 HOH A 203 504 206 HOH HOH . C 3 HOH A 204 505 207 HOH HOH . C 3 HOH A 205 506 208 HOH HOH . C 3 HOH A 206 507 209 HOH HOH . C 3 HOH A 207 508 210 HOH HOH . C 3 HOH A 208 509 211 HOH HOH . C 3 HOH A 209 510 212 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S1 COL . . . B 2 14.194 45.059 17.006 1 23.15 ? S1 COL 301 A 1 HETATM 2 C C2 COL . . . B 2 13.958 45.57 18.702 1 17.76 ? C2 COL 301 A 1 HETATM 3 C C3 COL . . . B 2 12.499 45.548 18.97 1 19.49 ? C3 COL 301 A 1 HETATM 4 C C4 COL . . . B 2 11.449 45.264 18.167 1 18.45 ? C4 COL 301 A 1 HETATM 5 C C5 COL . . . B 2 11.406 44.649 16.812 1 18.9 ? C5 COL 301 A 1 HETATM 6 C C6 COL . . . B 2 12.761 43.942 16.72 1 19.6 ? C6 COL 301 A 1 HETATM 7 S S13 COL . . . B 2 11.996 46.235 20.479 1 17.68 ? S13 COL 301 A 1 HETATM 8 C C14 COL . . . B 2 10.401 46.044 20.02 1 17.64 ? C14 COL 301 A 1 HETATM 9 C C15 COL . . . B 2 10.166 45.556 18.818 1 18.49 ? C15 COL 301 A 1 HETATM 10 C C16 COL . . . B 2 8.729 45.429 18.284 1 18.49 ? C16 COL 301 A 1 HETATM 11 O O17 COL . . . B 2 7.738 45.423 18.957 1 17.21 ? O17 COL 301 A 1 HETATM 12 O O18 COL . . . B 2 8.667 45.355 17.013 1 17.03 ? O18 COL 301 A 1 HETATM 13 N N19 COL . . . B 2 9.308 46.505 20.851 1 18.93 ? N19 COL 301 A 1 HETATM 14 C C20 COL . . . B 2 9.498 47.204 21.976 1 18.64 ? C20 COL 301 A 1 HETATM 15 C C21 COL . . . B 2 8.159 47.645 22.546 1 17.05 ? C21 COL 301 A 1 HETATM 16 O O22 COL . . . B 2 7.158 46.717 22.4 1 16.38 ? O22 COL 301 A 1 HETATM 17 O O23 COL . . . B 2 7.942 48.586 23.234 1 18.07 ? O23 COL 301 A 1 HETATM 18 O O24 COL . . . B 2 10.569 47.268 22.601 1 17.29 ? O24 COL 301 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 18 #