data_1GFZ
#
_model_server_result.job_id            cS36bdQVRaEDeNFTwVVE-Q 
_model_server_result.datetime_utc      '2024-10-19 05:27:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1gfz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":940}' 
#
_entry.id    1GFZ 
#
_exptl.entry_id    1GFZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              194.191 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            CAFFEINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1GFZ 
_cell.length_a            128.296 
_cell.length_b            128.296 
_cell.length_c            116.377 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1GFZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 116.377 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            NZ 
_struct_conn.ptnr1_label_comp_id            LYS 
_struct_conn.ptnr1_label_seq_id             680 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             LYS 
_struct_conn.ptnr1_auth_seq_id              680 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            C4A 
_struct_conn.ptnr2_label_comp_id            PLP 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             PLP 
_struct_conn.ptnr2_auth_seq_id              999 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.339 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C8 H10 N4 O2' 
_chem_comp.formula_weight    194.191 
_chem_comp.id                CFF 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              CAFFEINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     3,7-DIHYDRO-1,3,7-TRIMETHYL-1H-PURINE-2,6-DIONE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 CFF sing 70 n y 
N1 C10 CFF sing 71 n n 
N1 C6 CFF sing 72 n y 
C2 N3 CFF sing 73 n y 
C2 O11 CFF doub 74 n n 
C10 H101 CFF sing 75 n n 
C10 H102 CFF sing 76 n n 
C10 H103 CFF sing 77 n n 
C6 C5 CFF sing 78 n y 
C6 O13 CFF doub 79 n n 
N3 C12 CFF sing 80 n n 
N3 C4 CFF sing 81 n y 
C12 H121 CFF sing 82 n n 
C12 H122 CFF sing 83 n n 
C12 H123 CFF sing 84 n n 
C4 C5 CFF doub 85 n y 
C4 N9 CFF sing 86 n y 
C5 N7 CFF sing 87 n y 
N9 C8 CFF doub 88 n y 
N7 C8 CFF sing 89 n y 
N7 C14 CFF sing 90 n n 
C8 H81 CFF sing 91 n n 
C14 H141 CFF sing 92 n n 
C14 H142 CFF sing 93 n n 
C14 H143 CFF sing 94 n n 
#
_atom_sites.entry_id                     1GFZ 
_atom_sites.fract_transf_matrix[1][1]    0.007794 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007794 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008593 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PLP A 1 999 999 PLP PLP . 
C 3 IMP A 1 930 930 IMP IMP . 
D 4 CFF A 1 940 940 CFF CFF . 
E 5 HOH A 1 1000 1 HOH HOH . 
E 5 HOH A 2 1001 2 HOH HOH . 
E 5 HOH A 3 1002 3 HOH HOH . 
E 5 HOH A 4 1003 4 HOH HOH . 
E 5 HOH A 5 1004 5 HOH HOH . 
E 5 HOH A 6 1005 6 HOH HOH . 
E 5 HOH A 7 1006 7 HOH HOH . 
E 5 HOH A 8 1007 8 HOH HOH . 
E 5 HOH A 9 1008 9 HOH HOH . 
E 5 HOH A 10 1009 10 HOH HOH . 
E 5 HOH A 11 1010 11 HOH HOH . 
E 5 HOH A 12 1011 12 HOH HOH . 
E 5 HOH A 13 1012 13 HOH HOH . 
E 5 HOH A 14 1013 14 HOH HOH . 
E 5 HOH A 15 1014 15 HOH HOH . 
E 5 HOH A 16 1015 16 HOH HOH . 
E 5 HOH A 17 1016 17 HOH HOH . 
E 5 HOH A 18 1017 18 HOH HOH . 
E 5 HOH A 19 1018 19 HOH HOH . 
E 5 HOH A 20 1019 20 HOH HOH . 
E 5 HOH A 21 1020 21 HOH HOH . 
E 5 HOH A 22 1021 22 HOH HOH . 
E 5 HOH A 23 1022 23 HOH HOH . 
E 5 HOH A 24 1023 24 HOH HOH . 
E 5 HOH A 25 1024 25 HOH HOH . 
E 5 HOH A 26 1025 26 HOH HOH . 
E 5 HOH A 27 1026 27 HOH HOH . 
E 5 HOH A 28 1027 28 HOH HOH . 
E 5 HOH A 29 1028 29 HOH HOH . 
E 5 HOH A 30 1029 30 HOH HOH . 
E 5 HOH A 31 1030 31 HOH HOH . 
E 5 HOH A 32 1031 32 HOH HOH . 
E 5 HOH A 33 1032 33 HOH HOH . 
E 5 HOH A 34 1033 34 HOH HOH . 
E 5 HOH A 35 1034 35 HOH HOH . 
E 5 HOH A 36 1035 36 HOH HOH . 
E 5 HOH A 37 1036 37 HOH HOH . 
E 5 HOH A 38 1037 38 HOH HOH . 
E 5 HOH A 39 1038 39 HOH HOH . 
E 5 HOH A 40 1039 40 HOH HOH . 
E 5 HOH A 41 1040 41 HOH HOH . 
E 5 HOH A 42 1041 42 HOH HOH . 
E 5 HOH A 43 1042 43 HOH HOH . 
E 5 HOH A 44 1043 44 HOH HOH . 
E 5 HOH A 45 1044 45 HOH HOH . 
E 5 HOH A 46 1045 46 HOH HOH . 
E 5 HOH A 47 1046 47 HOH HOH . 
E 5 HOH A 48 1047 48 HOH HOH . 
E 5 HOH A 49 1048 49 HOH HOH . 
E 5 HOH A 50 1049 50 HOH HOH . 
E 5 HOH A 51 1050 51 HOH HOH . 
E 5 HOH A 52 1051 52 HOH HOH . 
E 5 HOH A 53 1052 53 HOH HOH . 
E 5 HOH A 54 1053 54 HOH HOH . 
E 5 HOH A 55 1054 55 HOH HOH . 
E 5 HOH A 56 1055 56 HOH HOH . 
E 5 HOH A 57 1056 57 HOH HOH . 
E 5 HOH A 58 1057 58 HOH HOH . 
E 5 HOH A 59 1058 59 HOH HOH . 
E 5 HOH A 60 1059 60 HOH HOH . 
E 5 HOH A 61 1060 61 HOH HOH . 
E 5 HOH A 62 1061 62 HOH HOH . 
E 5 HOH A 63 1062 63 HOH HOH . 
E 5 HOH A 64 1063 64 HOH HOH . 
E 5 HOH A 65 1064 65 HOH HOH . 
E 5 HOH A 66 1065 66 HOH HOH . 
E 5 HOH A 67 1066 67 HOH HOH . 
E 5 HOH A 68 1067 68 HOH HOH . 
E 5 HOH A 69 1068 69 HOH HOH . 
E 5 HOH A 70 1069 70 HOH HOH . 
E 5 HOH A 71 1070 71 HOH HOH . 
E 5 HOH A 72 1071 72 HOH HOH . 
E 5 HOH A 73 1072 73 HOH HOH . 
E 5 HOH A 74 1073 74 HOH HOH . 
E 5 HOH A 75 1074 75 HOH HOH . 
E 5 HOH A 76 1075 76 HOH HOH . 
E 5 HOH A 77 1076 77 HOH HOH . 
E 5 HOH A 78 1077 78 HOH HOH . 
E 5 HOH A 79 1078 79 HOH HOH . 
E 5 HOH A 80 1079 80 HOH HOH . 
E 5 HOH A 81 1080 81 HOH HOH . 
E 5 HOH A 82 1081 82 HOH HOH . 
E 5 HOH A 83 1082 83 HOH HOH . 
E 5 HOH A 84 1083 84 HOH HOH . 
E 5 HOH A 85 1084 85 HOH HOH . 
E 5 HOH A 86 1085 86 HOH HOH . 
E 5 HOH A 87 1086 87 HOH HOH . 
E 5 HOH A 88 1087 88 HOH HOH . 
E 5 HOH A 89 1088 89 HOH HOH . 
E 5 HOH A 90 1089 90 HOH HOH . 
E 5 HOH A 91 1090 91 HOH HOH . 
E 5 HOH A 92 1091 92 HOH HOH . 
E 5 HOH A 93 1092 93 HOH HOH . 
E 5 HOH A 94 1093 94 HOH HOH . 
E 5 HOH A 95 1094 95 HOH HOH . 
E 5 HOH A 96 1095 96 HOH HOH . 
E 5 HOH A 97 1096 97 HOH HOH . 
E 5 HOH A 98 1097 98 HOH HOH . 
E 5 HOH A 99 1098 99 HOH HOH . 
E 5 HOH A 100 1099 100 HOH HOH . 
E 5 HOH A 101 1100 101 HOH HOH . 
E 5 HOH A 102 1101 102 HOH HOH . 
E 5 HOH A 103 1102 103 HOH HOH . 
E 5 HOH A 104 1103 104 HOH HOH . 
E 5 HOH A 105 1104 105 HOH HOH . 
E 5 HOH A 106 1105 106 HOH HOH . 
E 5 HOH A 107 1106 107 HOH HOH . 
E 5 HOH A 108 1107 108 HOH HOH . 
E 5 HOH A 109 1108 109 HOH HOH . 
E 5 HOH A 110 1109 110 HOH HOH . 
E 5 HOH A 111 1110 111 HOH HOH . 
E 5 HOH A 112 1111 112 HOH HOH . 
E 5 HOH A 113 1112 113 HOH HOH . 
E 5 HOH A 114 1113 114 HOH HOH . 
E 5 HOH A 115 1114 115 HOH HOH . 
E 5 HOH A 116 1115 116 HOH HOH . 
E 5 HOH A 117 1116 117 HOH HOH . 
E 5 HOH A 118 1117 118 HOH HOH . 
E 5 HOH A 119 1118 119 HOH HOH . 
E 5 HOH A 120 1119 120 HOH HOH . 
E 5 HOH A 121 1120 121 HOH HOH . 
E 5 HOH A 122 1121 122 HOH HOH . 
E 5 HOH A 123 1122 123 HOH HOH . 
E 5 HOH A 124 1123 124 HOH HOH . 
E 5 HOH A 125 1124 125 HOH HOH . 
E 5 HOH A 126 1125 126 HOH HOH . 
E 5 HOH A 127 1126 127 HOH HOH . 
E 5 HOH A 128 1127 128 HOH HOH . 
E 5 HOH A 129 1128 129 HOH HOH . 
E 5 HOH A 130 1129 130 HOH HOH . 
E 5 HOH A 131 1130 131 HOH HOH . 
E 5 HOH A 132 1131 132 HOH HOH . 
E 5 HOH A 133 1132 133 HOH HOH . 
E 5 HOH A 134 1133 134 HOH HOH . 
E 5 HOH A 135 1134 135 HOH HOH . 
E 5 HOH A 136 1135 136 HOH HOH . 
E 5 HOH A 137 1136 137 HOH HOH . 
E 5 HOH A 138 1137 138 HOH HOH . 
E 5 HOH A 139 1138 139 HOH HOH . 
E 5 HOH A 140 1139 140 HOH HOH . 
E 5 HOH A 141 1140 141 HOH HOH . 
E 5 HOH A 142 1141 142 HOH HOH . 
E 5 HOH A 143 1142 143 HOH HOH . 
E 5 HOH A 144 1143 144 HOH HOH . 
E 5 HOH A 145 1144 145 HOH HOH . 
E 5 HOH A 146 1145 146 HOH HOH . 
E 5 HOH A 147 1146 147 HOH HOH . 
E 5 HOH A 148 1147 148 HOH HOH . 
E 5 HOH A 149 1148 149 HOH HOH . 
E 5 HOH A 150 1149 150 HOH HOH . 
E 5 HOH A 151 1150 151 HOH HOH . 
E 5 HOH A 152 1151 152 HOH HOH . 
E 5 HOH A 153 1152 153 HOH HOH . 
E 5 HOH A 154 1153 154 HOH HOH . 
E 5 HOH A 155 1154 155 HOH HOH . 
E 5 HOH A 156 1155 156 HOH HOH . 
E 5 HOH A 157 1156 157 HOH HOH . 
E 5 HOH A 158 1157 158 HOH HOH . 
E 5 HOH A 159 1158 159 HOH HOH . 
E 5 HOH A 160 1159 160 HOH HOH . 
E 5 HOH A 161 1160 161 HOH HOH . 
E 5 HOH A 162 1161 162 HOH HOH . 
E 5 HOH A 163 1162 163 HOH HOH . 
E 5 HOH A 164 1163 164 HOH HOH . 
E 5 HOH A 165 1164 165 HOH HOH . 
E 5 HOH A 166 1165 166 HOH HOH . 
E 5 HOH A 167 1166 167 HOH HOH . 
E 5 HOH A 168 1167 168 HOH HOH . 
E 5 HOH A 169 1168 169 HOH HOH . 
E 5 HOH A 170 1169 170 HOH HOH . 
E 5 HOH A 171 1170 171 HOH HOH . 
E 5 HOH A 172 1171 172 HOH HOH . 
E 5 HOH A 173 1172 173 HOH HOH . 
E 5 HOH A 174 1173 174 HOH HOH . 
E 5 HOH A 175 1174 175 HOH HOH . 
E 5 HOH A 176 1175 176 HOH HOH . 
E 5 HOH A 177 1176 177 HOH HOH . 
E 5 HOH A 178 1177 178 HOH HOH . 
E 5 HOH A 179 1178 179 HOH HOH . 
E 5 HOH A 180 1179 180 HOH HOH . 
E 5 HOH A 181 1180 181 HOH HOH . 
E 5 HOH A 182 1181 182 HOH HOH . 
E 5 HOH A 183 1182 183 HOH HOH . 
E 5 HOH A 184 1183 184 HOH HOH . 
E 5 HOH A 185 1184 185 HOH HOH . 
E 5 HOH A 186 1185 186 HOH HOH . 
E 5 HOH A 187 1186 187 HOH HOH . 
E 5 HOH A 188 1187 188 HOH HOH . 
E 5 HOH A 189 1188 189 HOH HOH . 
E 5 HOH A 190 1189 190 HOH HOH . 
E 5 HOH A 191 1190 191 HOH HOH . 
E 5 HOH A 192 1191 192 HOH HOH . 
E 5 HOH A 193 1192 193 HOH HOH . 
E 5 HOH A 194 1193 194 HOH HOH . 
E 5 HOH A 195 1194 195 HOH HOH . 
E 5 HOH A 196 1195 197 HOH HOH . 
E 5 HOH A 197 1196 198 HOH HOH . 
E 5 HOH A 198 1197 199 HOH HOH . 
E 5 HOH A 199 1198 200 HOH HOH . 
E 5 HOH A 200 1199 201 HOH HOH . 
E 5 HOH A 201 1200 202 HOH HOH . 
E 5 HOH A 202 1201 203 HOH HOH . 
E 5 HOH A 203 1202 204 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 CFF . . . D 4 38.984 37.034 29.965 1 30 ? N1 CFF 940 A 1 
HETATM 2 C C2 CFF . . . D 4 38.49 35.88 29.075 1 28.8 ? C2 CFF 940 A 1 
HETATM 3 C C10 CFF . . . D 4 39.954 37.99 29.308 1 28.78 ? C10 CFF 940 A 1 
HETATM 4 C C6 CFF . . . D 4 38.608 37.207 31.325 1 32.22 ? C6 CFF 940 A 1 
HETATM 5 N N3 CFF . . . D 4 37.635 35.065 29.712 1 28 ? N3 CFF 940 A 1 
HETATM 6 O O11 CFF . . . D 4 38.888 35.82 27.943 1 36.15 ? O11 CFF 940 A 1 
HETATM 7 C C12 CFF . . . D 4 37.08 33.905 28.968 1 28.95 ? C12 CFF 940 A 1 
HETATM 8 C C4 CFF . . . D 4 37.218 35.206 31.062 1 30.29 ? C4 CFF 940 A 1 
HETATM 9 C C5 CFF . . . D 4 37.648 36.244 31.844 1 31.99 ? C5 CFF 940 A 1 
HETATM 10 N N9 CFF . . . D 4 36.375 34.424 31.7 1 30.04 ? N9 CFF 940 A 1 
HETATM 11 O O13 CFF . . . D 4 39.056 38.2 32.006 1 35.9 ? O13 CFF 940 A 1 
HETATM 12 N N7 CFF . . . D 4 37.055 36.065 33.097 1 35.1 ? N7 CFF 940 A 1 
HETATM 13 C C8 CFF . . . D 4 36.296 34.968 32.926 1 36.5 ? C8 CFF 940 A 1 
HETATM 14 C C14 CFF . . . D 4 37.201 36.929 34.306 1 36.63 ? C14 CFF 940 A 1 
#
_model_server_stats.io_time_ms              60 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           317 
_model_server_stats.encode_time_ms          15 
_model_server_stats.element_count           14 
#