data_1GI9 # _model_server_result.job_id Zo6HkkbjMOp1_ayTVyXEBg _model_server_result.datetime_utc '2024-11-21 22:26:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1gi9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":246}' # _entry.id 1GI9 # _exptl.entry_id 1GI9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 283.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(2-HYDROXY-5-METHOXY-PHENYL)-1H-BENZOIMIDAZOLE-5-CARBOXAMIDINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.9 _cell.angle_gamma 90 _cell.entry_id 1GI9 _cell.length_a 82.14 _cell.length_b 50 _cell.length_c 67.15 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1GI9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 13 A CYS 13 1_555 B SG CYS 121 B CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf2 B SG CYS 31 B CYS 42 1_555 B SG CYS 47 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? disulf ? disulf3 B SG CYS 39 B CYS 50 1_555 B SG CYS 110 B CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf4 B SG CYS 135 B CYS 136 1_555 B SG CYS 204 B CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 B SG CYS 167 B CYS 168 1_555 B SG CYS 183 B CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf6 B SG CYS 194 B CYS 191 1_555 B SG CYS 222 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? # _chem_comp.formula 'C15 H15 N4 O2 1' _chem_comp.formula_weight 283.305 _chem_comp.id 123 _chem_comp.mon_nstd_flag . _chem_comp.name 2-(2-HYDROXY-5-METHOXY-PHENYL)-1H-BENZOIMIDAZOLE-5-CARBOXAMIDINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 123 sing 1 n y C1 C6 123 doub 2 n y C1 C7 123 sing 3 n n C2 C3 123 doub 4 n y C2 HC2 123 sing 5 n n C3 C4 123 sing 6 n y C3 HC3 123 sing 7 n n C4 C5 123 doub 8 n y C4 N3 123 sing 9 n y C5 C6 123 sing 10 n y C5 N4 123 sing 11 n y C6 HC6 123 sing 12 n n C7 N1 123 sing 13 n n C7 N2 123 doub 14 n n N1 HH11 123 sing 15 n n N1 HH12 123 sing 16 n n N2 HH21 123 sing 17 n n N2 HH22 123 sing 18 n n N3 C8 123 sing 19 n y N3 HN3 123 sing 20 n n N4 C8 123 doub 21 n y C8 C1' 123 sing 22 n y C1' C2' 123 doub 23 n y C1' C6' 123 sing 24 n y C2' C3' 123 sing 25 n y C2' HC2' 123 sing 26 n n C3' O3' 123 sing 27 n n C3' C4' 123 doub 28 n y O3' CM3 123 sing 29 n n CM3 "H3'1" 123 sing 30 n n CM3 "H3'2" 123 sing 31 n n CM3 "H3'3" 123 sing 32 n n C4' C5' 123 sing 33 n y C4' HC4' 123 sing 34 n n C5' C6' 123 doub 35 n y C5' HC5' 123 sing 36 n n C6' O6' 123 sing 37 n n O6' HO6 123 sing 38 n n # _atom_sites.entry_id 1GI9 _atom_sites.fract_transf_matrix[1][1] 0.012174 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005395 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016289 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 123 B 1 246 246 123 123 . D 4 CIT B 1 1 1 CIT CIT . E 4 CIT B 1 2 2 CIT CIT . F 5 HOH A 1 129 129 HOH HOH . F 5 HOH A 2 131 131 HOH HOH . F 5 HOH A 3 467 467 HOH HOH . G 5 HOH B 1 247 4 HOH HOH . G 5 HOH B 2 248 5 HOH HOH . G 5 HOH B 3 249 7 HOH HOH . G 5 HOH B 4 250 9 HOH HOH . G 5 HOH B 5 251 10 HOH HOH . G 5 HOH B 6 252 22 HOH HOH . G 5 HOH B 7 253 24 HOH HOH . G 5 HOH B 8 254 27 HOH HOH . G 5 HOH B 9 255 28 HOH HOH . G 5 HOH B 10 256 29 HOH HOH . G 5 HOH B 11 257 35 HOH HOH . G 5 HOH B 12 258 36 HOH HOH . G 5 HOH B 13 259 37 HOH HOH . G 5 HOH B 14 260 40 HOH HOH . G 5 HOH B 15 261 41 HOH HOH . G 5 HOH B 16 262 42 HOH HOH . G 5 HOH B 17 263 45 HOH HOH . G 5 HOH B 18 264 46 HOH HOH . G 5 HOH B 19 265 53 HOH HOH . G 5 HOH B 20 266 54 HOH HOH . G 5 HOH B 21 267 56 HOH HOH . G 5 HOH B 22 268 58 HOH HOH . G 5 HOH B 23 269 59 HOH HOH . G 5 HOH B 24 270 73 HOH HOH . G 5 HOH B 25 271 77 HOH HOH . G 5 HOH B 26 272 97 HOH HOH . G 5 HOH B 27 273 99 HOH HOH . G 5 HOH B 28 274 100 HOH HOH . G 5 HOH B 29 275 105 HOH HOH . G 5 HOH B 30 276 126 HOH HOH . G 5 HOH B 31 277 130 HOH HOH . G 5 HOH B 32 278 136 HOH HOH . G 5 HOH B 33 279 140 HOH HOH . G 5 HOH B 34 280 150 HOH HOH . G 5 HOH B 35 281 172 HOH HOH . G 5 HOH B 36 282 207 HOH HOH . G 5 HOH B 37 283 281 HOH HOH . G 5 HOH B 38 284 295 HOH HOH . G 5 HOH B 39 285 315 HOH HOH . G 5 HOH B 40 286 316 HOH HOH . G 5 HOH B 41 287 329 HOH HOH . G 5 HOH B 42 288 343 HOH HOH . G 5 HOH B 43 289 355 HOH HOH . G 5 HOH B 44 290 373 HOH HOH . G 5 HOH B 45 291 377 HOH HOH . G 5 HOH B 46 292 378 HOH HOH . G 5 HOH B 47 293 399 HOH HOH . G 5 HOH B 48 294 430 HOH HOH . G 5 HOH B 49 295 447 HOH HOH . G 5 HOH B 50 296 468 HOH HOH . G 5 HOH B 51 297 471 HOH HOH . G 5 HOH B 52 298 473 HOH HOH . G 5 HOH B 53 299 479 HOH HOH . G 5 HOH B 54 300 480 HOH HOH . G 5 HOH B 55 301 484 HOH HOH . G 5 HOH B 56 302 497 HOH HOH . G 5 HOH B 57 303 501 HOH HOH . G 5 HOH B 58 304 515 HOH HOH . G 5 HOH B 59 305 524 HOH HOH . G 5 HOH B 60 306 532 HOH HOH . G 5 HOH B 61 307 550 HOH HOH . G 5 HOH B 62 308 555 HOH HOH . G 5 HOH B 63 309 572 HOH HOH . G 5 HOH B 64 310 579 HOH HOH . G 5 HOH B 65 311 589 HOH HOH . G 5 HOH B 66 312 590 HOH HOH . G 5 HOH B 67 313 591 HOH HOH . G 5 HOH B 68 314 592 HOH HOH . G 5 HOH B 69 315 596 HOH HOH . G 5 HOH B 70 316 597 HOH HOH . G 5 HOH B 71 317 599 HOH HOH . G 5 HOH B 72 318 602 HOH HOH . G 5 HOH B 73 319 605 HOH HOH . G 5 HOH B 74 320 610 HOH HOH . G 5 HOH B 75 321 624 HOH HOH . G 5 HOH B 76 322 627 HOH HOH . G 5 HOH B 77 323 628 HOH HOH . G 5 HOH B 78 324 635 HOH HOH . G 5 HOH B 79 325 636 HOH HOH . G 5 HOH B 80 326 637 HOH HOH . G 5 HOH B 81 327 639 HOH HOH . G 5 HOH B 82 328 642 HOH HOH . G 5 HOH B 83 329 647 HOH HOH . G 5 HOH B 84 330 651 HOH HOH . G 5 HOH B 85 331 678 HOH HOH . G 5 HOH B 86 332 690 HOH HOH . G 5 HOH B 87 333 701 HOH HOH . G 5 HOH B 88 334 714 HOH HOH . G 5 HOH B 89 335 717 HOH HOH . G 5 HOH B 90 336 718 HOH HOH . G 5 HOH B 91 337 719 HOH HOH . G 5 HOH B 92 338 720 HOH HOH . G 5 HOH B 93 339 743 HOH HOH . G 5 HOH B 94 340 744 HOH HOH . G 5 HOH B 95 341 748 HOH HOH . G 5 HOH B 96 342 754 HOH HOH . G 5 HOH B 97 343 757 HOH HOH . G 5 HOH B 98 344 766 HOH HOH . G 5 HOH B 99 345 776 HOH HOH . G 5 HOH B 100 346 778 HOH HOH . G 5 HOH B 101 347 780 HOH HOH . G 5 HOH B 102 348 806 HOH HOH . G 5 HOH B 103 349 807 HOH HOH . G 5 HOH B 104 350 831 HOH HOH . G 5 HOH B 105 351 834 HOH HOH . G 5 HOH B 106 352 838 HOH HOH . G 5 HOH B 107 353 843 HOH HOH . G 5 HOH B 108 354 887 HOH HOH . G 5 HOH B 109 355 922 HOH HOH . G 5 HOH B 110 356 949 HOH HOH . G 5 HOH B 111 357 971 HOH HOH . G 5 HOH B 112 358 975 HOH HOH . G 5 HOH B 113 359 976 HOH HOH . G 5 HOH B 114 360 979 HOH HOH . G 5 HOH B 115 361 1026 HOH HOH . G 5 HOH B 116 362 1034 HOH HOH . G 5 HOH B 117 363 1043 HOH HOH . G 5 HOH B 118 364 1045 HOH HOH . G 5 HOH B 119 365 1051 HOH HOH . G 5 HOH B 120 366 1052 HOH HOH . G 5 HOH B 121 367 1055 HOH HOH . G 5 HOH B 122 368 1056 HOH HOH . G 5 HOH B 123 369 1066 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 123 . . . C 3 8.743 1.837 24.699 1 7.25 ? C1 123 246 B 1 HETATM 2 C C2 123 . . . C 3 9.544 1.622 23.552 1 7.42 ? C2 123 246 B 1 HETATM 3 C C3 123 . . . C 3 10.175 2.669 22.883 1 4.86 ? C3 123 246 B 1 HETATM 4 C C4 123 . . . C 3 9.98 3.936 23.385 1 7.76 ? C4 123 246 B 1 HETATM 5 C C5 123 . . . C 3 9.232 4.192 24.48 1 10.06 ? C5 123 246 B 1 HETATM 6 C C6 123 . . . C 3 8.602 3.167 25.151 1 6.58 ? C6 123 246 B 1 HETATM 7 C C7 123 . . . C 3 8.115 0.79 25.368 1 10.16 ? C7 123 246 B 1 HETATM 8 N N1 123 . . . C 3 7.546 1.032 26.517 1 19.22 ? N1 123 246 B 1 HETATM 9 N N2 123 . . . C 3 8.076 -0.423 24.874 1 12.49 ? N2 123 246 B 1 HETATM 10 N N3 123 . . . C 3 10.412 5.08 23.004 1 8.55 ? N3 123 246 B 1 HETATM 11 N N4 123 . . . C 3 9.181 5.466 24.781 1 11.61 ? N4 123 246 B 1 HETATM 12 C C8 123 . . . C 3 9.939 5.989 23.817 1 11.54 ? C8 123 246 B 1 HETATM 13 C C1' 123 . . . C 3 10.222 7.348 23.641 1 11.33 ? C1' 123 246 B 1 HETATM 14 C C2' 123 . . . C 3 9.899 8.334 24.596 1 15.61 ? C2' 123 246 B 1 HETATM 15 C C3' 123 . . . C 3 10.195 9.693 24.394 1 17.82 ? C3' 123 246 B 1 HETATM 16 O O3' 123 . . . C 3 9.903 10.687 25.325 1 21.09 ? O3' 123 246 B 1 HETATM 17 C CM3 123 . . . C 3 9.653 10.316 26.674 0.35 19.38 ? CM3 123 246 B 1 HETATM 18 C C4' 123 . . . C 3 10.823 10.067 23.208 1 16.94 ? C4' 123 246 B 1 HETATM 19 C C5' 123 . . . C 3 11.151 9.12 22.252 1 13.03 ? C5' 123 246 B 1 HETATM 20 C C6' 123 . . . C 3 10.854 7.781 22.463 1 11.55 ? C6' 123 246 B 1 HETATM 21 O O6' 123 . . . C 3 11.193 6.874 21.48 1 12.99 ? O6' 123 246 B 1 HETATM 22 H HC2 123 . . . C 3 9.678 0.619 23.172 1 7.62 ? HC2 123 246 B 1 HETATM 23 H HC3 123 . . . C 3 10.785 2.5 22.007 1 4.34 ? HC3 123 246 B 1 HETATM 24 H HC6 123 . . . C 3 8.008 3.393 26.016 1 6.38 ? HC6 123 246 B 1 HETATM 25 H HH11 123 . . . C 3 7.573 1.944 26.943 1 17.07 ? HH11 123 246 B 1 HETATM 26 H HH12 123 . . . C 3 7.103 0.308 27.052 1 17.4 ? HH12 123 246 B 1 HETATM 27 H HH21 123 . . . C 3 8.481 -0.636 23.974 1 11.8 ? HH21 123 246 B 1 HETATM 28 H HH22 123 . . . C 3 7.638 -1.168 25.382 1 9.87 ? HH22 123 246 B 1 HETATM 29 H HN3 123 . . . C 3 10.992 5.282 22.237 1 6.1 ? HN3 123 246 B 1 HETATM 30 H HC2' 123 . . . C 3 9.411 8.031 25.51 1 11.84 ? HC2' 123 246 B 1 HETATM 31 H "H3'1" 123 . . . C 3 10.023 11.09 27.327 0.35 20.1 ? "H3'1" 123 246 B 1 HETATM 32 H "H3'2" 123 . . . C 3 8.592 10.178 26.804 0.35 19.97 ? "H3'2" 123 246 B 1 HETATM 33 H "H3'3" 123 . . . C 3 10.149 9.392 26.908 0.35 20.38 ? "H3'3" 123 246 B 1 HETATM 34 H HC4' 123 . . . C 3 11.058 11.104 23.029 1 17.87 ? HC4' 123 246 B 1 HETATM 35 H HC5' 123 . . . C 3 11.642 9.425 21.34 1 13.82 ? HC5' 123 246 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 35 #