data_1GIA
#
_model_server_result.job_id            GKIa3mssLktbO4ISbx2ZDg 
_model_server_result.datetime_utc      '2024-10-18 17:17:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1gia 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":355}' 
#
_entry.id    1GIA 
#
_exptl.entry_id    1GIA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              539.246 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1GIA 
_cell.length_a            80.6 
_cell.length_b            80.6 
_cell.length_c            106.5 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1GIA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 46 A SER 47 1_555 B MG MG . A MG 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? 
metalc ? metalc2 A OG1 THR 180 A THR 181 1_555 B MG MG . A MG 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
metalc ? metalc3 C O2G GSP . A GSP 355 1_555 B MG MG . A MG 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? 
metalc ? metalc4 C O2B GSP . A GSP 355 1_555 B MG MG . A MG 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? 
metalc ? metalc5 B MG MG . A MG 356 1_555 D O HOH . A HOH 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
metalc ? metalc6 B MG MG . A MG 356 1_555 D O HOH . A HOH 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3 S' 
_chem_comp.formula_weight    539.246 
_chem_comp.id                GSP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O3B GSP sing 129 n n 
PG S1G GSP doub 130 n n 
PG O2G GSP sing 131 n n 
PG O3G GSP sing 132 n n 
O3B PB GSP sing 133 n n 
O2G HOG2 GSP sing 134 n n 
O3G HOG3 GSP sing 135 n n 
PB O1B GSP doub 136 n n 
PB O2B GSP sing 137 n n 
PB O3A GSP sing 138 n n 
O2B HOB2 GSP sing 139 n n 
PA O1A GSP doub 140 n n 
PA O2A GSP sing 141 n n 
PA O3A GSP sing 142 n n 
PA O5' GSP sing 143 n n 
O2A HOA2 GSP sing 144 n n 
O5' C5' GSP sing 145 n n 
C5' C4' GSP sing 146 n n 
C5' "H5'1" GSP sing 147 n n 
C5' "H5'2" GSP sing 148 n n 
C4' O4' GSP sing 149 n n 
C4' C3' GSP sing 150 n n 
C4' H4' GSP sing 151 n n 
O4' C1' GSP sing 152 n n 
C3' O3' GSP sing 153 n n 
C3' C2' GSP sing 154 n n 
C3' H3' GSP sing 155 n n 
O3' HO3' GSP sing 156 n n 
C2' O2' GSP sing 157 n n 
C2' C1' GSP sing 158 n n 
C2' H2' GSP sing 159 n n 
O2' HO2' GSP sing 160 n n 
C1' N9 GSP sing 161 n n 
C1' H1' GSP sing 162 n n 
N9 C8 GSP sing 163 n y 
N9 C4 GSP sing 164 n y 
C8 N7 GSP doub 165 n y 
C8 H8 GSP sing 166 n n 
N7 C5 GSP sing 167 n y 
C5 C6 GSP sing 168 n n 
C5 C4 GSP doub 169 n y 
C6 O6 GSP doub 170 n n 
C6 N1 GSP sing 171 n n 
N1 C2 GSP sing 172 n n 
N1 HN1 GSP sing 173 n n 
C2 N2 GSP sing 174 n n 
C2 N3 GSP doub 175 n n 
N2 HN21 GSP sing 176 n n 
N2 HN22 GSP sing 177 n n 
N3 C4 GSP sing 178 n n 
#
_atom_sites.entry_id                     1GIA 
_atom_sites.fract_transf_matrix[1][1]    0.012407 
_atom_sites.fract_transf_matrix[1][2]    0.007163 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014326 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00939 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 356 356 MG MG . 
C 3 GSP A 1 355 355 GSP GSP . 
D 4 HOH A 1 401 401 HOH HOH . 
D 4 HOH A 2 402 402 HOH HOH . 
D 4 HOH A 3 403 403 HOH HOH . 
D 4 HOH A 4 404 404 HOH HOH . 
D 4 HOH A 5 405 405 HOH HOH . 
D 4 HOH A 6 406 406 HOH HOH . 
D 4 HOH A 7 407 407 HOH HOH . 
D 4 HOH A 8 408 408 HOH HOH . 
D 4 HOH A 9 409 409 HOH HOH . 
D 4 HOH A 10 410 410 HOH HOH . 
D 4 HOH A 11 411 411 HOH HOH . 
D 4 HOH A 12 412 412 HOH HOH . 
D 4 HOH A 13 413 413 HOH HOH . 
D 4 HOH A 14 414 414 HOH HOH . 
D 4 HOH A 15 415 415 HOH HOH . 
D 4 HOH A 16 416 416 HOH HOH . 
D 4 HOH A 17 417 417 HOH HOH . 
D 4 HOH A 18 418 418 HOH HOH . 
D 4 HOH A 19 419 419 HOH HOH . 
D 4 HOH A 20 420 420 HOH HOH . 
D 4 HOH A 21 421 421 HOH HOH . 
D 4 HOH A 22 422 422 HOH HOH . 
D 4 HOH A 23 423 423 HOH HOH . 
D 4 HOH A 24 424 424 HOH HOH . 
D 4 HOH A 25 425 425 HOH HOH . 
D 4 HOH A 26 426 426 HOH HOH . 
D 4 HOH A 27 427 427 HOH HOH . 
D 4 HOH A 28 428 428 HOH HOH . 
D 4 HOH A 29 429 429 HOH HOH . 
D 4 HOH A 30 430 430 HOH HOH . 
D 4 HOH A 31 431 431 HOH HOH . 
D 4 HOH A 32 432 432 HOH HOH . 
D 4 HOH A 33 433 433 HOH HOH . 
D 4 HOH A 34 434 434 HOH HOH . 
D 4 HOH A 35 435 435 HOH HOH . 
D 4 HOH A 36 436 436 HOH HOH . 
D 4 HOH A 37 437 437 HOH HOH . 
D 4 HOH A 38 438 438 HOH HOH . 
D 4 HOH A 39 439 439 HOH HOH . 
D 4 HOH A 40 440 440 HOH HOH . 
D 4 HOH A 41 441 441 HOH HOH . 
D 4 HOH A 42 442 442 HOH HOH . 
D 4 HOH A 43 443 443 HOH HOH . 
D 4 HOH A 44 444 444 HOH HOH . 
D 4 HOH A 45 445 445 HOH HOH . 
D 4 HOH A 46 446 446 HOH HOH . 
D 4 HOH A 47 447 447 HOH HOH . 
D 4 HOH A 48 448 448 HOH HOH . 
D 4 HOH A 49 449 449 HOH HOH . 
D 4 HOH A 50 450 450 HOH HOH . 
D 4 HOH A 51 451 451 HOH HOH . 
D 4 HOH A 52 452 452 HOH HOH . 
D 4 HOH A 53 453 453 HOH HOH . 
D 4 HOH A 54 454 454 HOH HOH . 
D 4 HOH A 55 455 455 HOH HOH . 
D 4 HOH A 56 456 456 HOH HOH . 
D 4 HOH A 57 457 457 HOH HOH . 
D 4 HOH A 58 458 458 HOH HOH . 
D 4 HOH A 59 459 459 HOH HOH . 
D 4 HOH A 60 460 460 HOH HOH . 
D 4 HOH A 61 461 461 HOH HOH . 
D 4 HOH A 62 462 462 HOH HOH . 
D 4 HOH A 63 463 463 HOH HOH . 
D 4 HOH A 64 464 464 HOH HOH . 
D 4 HOH A 65 465 465 HOH HOH . 
D 4 HOH A 66 466 466 HOH HOH . 
D 4 HOH A 67 467 467 HOH HOH . 
D 4 HOH A 68 468 468 HOH HOH . 
D 4 HOH A 69 469 469 HOH HOH . 
D 4 HOH A 70 470 470 HOH HOH . 
D 4 HOH A 71 471 471 HOH HOH . 
D 4 HOH A 72 472 472 HOH HOH . 
D 4 HOH A 73 473 473 HOH HOH . 
D 4 HOH A 74 474 474 HOH HOH . 
D 4 HOH A 75 475 475 HOH HOH . 
D 4 HOH A 76 476 476 HOH HOH . 
D 4 HOH A 77 477 477 HOH HOH . 
D 4 HOH A 78 478 478 HOH HOH . 
D 4 HOH A 79 479 479 HOH HOH . 
D 4 HOH A 80 480 480 HOH HOH . 
D 4 HOH A 81 481 481 HOH HOH . 
D 4 HOH A 82 482 482 HOH HOH . 
D 4 HOH A 83 483 483 HOH HOH . 
D 4 HOH A 84 484 484 HOH HOH . 
D 4 HOH A 85 485 485 HOH HOH . 
D 4 HOH A 86 486 486 HOH HOH . 
D 4 HOH A 87 487 487 HOH HOH . 
D 4 HOH A 88 488 488 HOH HOH . 
D 4 HOH A 89 489 489 HOH HOH . 
D 4 HOH A 90 490 490 HOH HOH . 
D 4 HOH A 91 491 491 HOH HOH . 
D 4 HOH A 92 492 492 HOH HOH . 
D 4 HOH A 93 493 493 HOH HOH . 
D 4 HOH A 94 494 494 HOH HOH . 
D 4 HOH A 95 495 495 HOH HOH . 
D 4 HOH A 96 496 496 HOH HOH . 
D 4 HOH A 97 497 497 HOH HOH . 
D 4 HOH A 98 498 498 HOH HOH . 
D 4 HOH A 99 499 499 HOH HOH . 
D 4 HOH A 100 500 500 HOH HOH . 
D 4 HOH A 101 501 501 HOH HOH . 
D 4 HOH A 102 502 502 HOH HOH . 
D 4 HOH A 103 503 503 HOH HOH . 
D 4 HOH A 104 504 504 HOH HOH . 
D 4 HOH A 105 505 505 HOH HOH . 
D 4 HOH A 106 506 506 HOH HOH . 
D 4 HOH A 107 507 507 HOH HOH . 
D 4 HOH A 108 508 508 HOH HOH . 
D 4 HOH A 109 509 509 HOH HOH . 
D 4 HOH A 110 510 510 HOH HOH . 
D 4 HOH A 111 511 511 HOH HOH . 
D 4 HOH A 112 512 512 HOH HOH . 
D 4 HOH A 113 513 513 HOH HOH . 
D 4 HOH A 114 514 514 HOH HOH . 
D 4 HOH A 115 515 515 HOH HOH . 
D 4 HOH A 116 516 516 HOH HOH . 
D 4 HOH A 117 517 517 HOH HOH . 
D 4 HOH A 118 518 518 HOH HOH . 
D 4 HOH A 119 519 519 HOH HOH . 
D 4 HOH A 120 520 520 HOH HOH . 
D 4 HOH A 121 521 521 HOH HOH . 
D 4 HOH A 122 522 522 HOH HOH . 
D 4 HOH A 123 523 523 HOH HOH . 
D 4 HOH A 124 524 524 HOH HOH . 
D 4 HOH A 125 525 525 HOH HOH . 
D 4 HOH A 126 526 526 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GSP . . . C 3 37.221 -32.274 12.474 1 16.52 ? PG GSP 355 A 1 
HETATM 2 O O3B GSP . . . C 3 37.514 -31.584 10.994 1 10.05 ? O3B GSP 355 A 1 
HETATM 3 S S1G GSP . . . C 3 38.939 -32.825 13.146 1 15.37 ? S1G GSP 355 A 1 
HETATM 4 O O2G GSP . . . C 3 36.396 -31.275 13.244 1 10.64 ? O2G GSP 355 A 1 
HETATM 5 O O3G GSP . . . C 3 36.476 -33.475 12.007 1 15.02 ? O3G GSP 355 A 1 
HETATM 6 P PB GSP . . . C 3 36.539 -30.736 10.068 1 7.08 ? PB GSP 355 A 1 
HETATM 7 O O1B GSP . . . C 3 36.062 -31.672 9.055 1 9.62 ? O1B GSP 355 A 1 
HETATM 8 O O2B GSP . . . C 3 35.474 -29.962 10.831 1 7.65 ? O2B GSP 355 A 1 
HETATM 9 P PA GSP . . . C 3 37.707 -28.074 9.474 1 9.62 ? PA GSP 355 A 1 
HETATM 10 O O1A GSP . . . C 3 36.469 -27.48 8.953 1 9.5 ? O1A GSP 355 A 1 
HETATM 11 O O2A GSP . . . C 3 38.124 -27.746 10.879 1 10.76 ? O2A GSP 355 A 1 
HETATM 12 O O3A GSP . . . C 3 37.499 -29.683 9.305 1 5.77 ? O3A GSP 355 A 1 
HETATM 13 O O5' GSP . . . C 3 38.916 -27.799 8.441 1 9.34 ? O5' GSP 355 A 1 
HETATM 14 C C5' GSP . . . C 3 40.29 -27.982 8.746 1 9.23 ? C5' GSP 355 A 1 
HETATM 15 C C4' GSP . . . C 3 41.124 -26.932 8.112 1 7.15 ? C4' GSP 355 A 1 
HETATM 16 O O4' GSP . . . C 3 40.934 -26.927 6.67 1 7.81 ? O4' GSP 355 A 1 
HETATM 17 C C3' GSP . . . C 3 40.695 -25.538 8.607 1 7.58 ? C3' GSP 355 A 1 
HETATM 18 O O3' GSP . . . C 3 41.853 -24.747 8.895 1 12.34 ? O3' GSP 355 A 1 
HETATM 19 C C2' GSP . . . C 3 39.943 -24.929 7.393 1 8.14 ? C2' GSP 355 A 1 
HETATM 20 O O2' GSP . . . C 3 40.086 -23.53 7.331 1 7.29 ? O2' GSP 355 A 1 
HETATM 21 C C1' GSP . . . C 3 40.647 -25.588 6.205 1 5.23 ? C1' GSP 355 A 1 
HETATM 22 N N9 GSP . . . C 3 39.749 -25.681 5.036 1 7.32 ? N9 GSP 355 A 1 
HETATM 23 C C8 GSP . . . C 3 38.509 -26.289 4.92 1 6.67 ? C8 GSP 355 A 1 
HETATM 24 N N7 GSP . . . C 3 37.992 -26.231 3.746 1 7.55 ? N7 GSP 355 A 1 
HETATM 25 C C5 GSP . . . C 3 39.028 -25.685 2.977 1 5.32 ? C5 GSP 355 A 1 
HETATM 26 C C6 GSP . . . C 3 39.13 -25.486 1.542 1 10.25 ? C6 GSP 355 A 1 
HETATM 27 O O6 GSP . . . C 3 38.359 -25.823 0.637 1 7.84 ? O6 GSP 355 A 1 
HETATM 28 N N1 GSP . . . C 3 40.312 -24.833 1.213 1 8.04 ? N1 GSP 355 A 1 
HETATM 29 C C2 GSP . . . C 3 41.311 -24.534 2.099 1 9.16 ? C2 GSP 355 A 1 
HETATM 30 N N2 GSP . . . C 3 42.33 -23.811 1.69 1 6 ? N2 GSP 355 A 1 
HETATM 31 N N3 GSP . . . C 3 41.26 -24.824 3.393 1 8.36 ? N3 GSP 355 A 1 
HETATM 32 C C4 GSP . . . C 3 40.065 -25.317 3.772 1 5.51 ? C4 GSP 355 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           32 
#