data_1GIH # _model_server_result.job_id NbNOAIR-wox8GNvhpUwphg _model_server_result.datetime_utc '2024-11-20 14:28:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1gih # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 1GIH # _exptl.entry_id 1GIH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 308.335 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(5-OXO-2,3,5,9B-TETRAHYDRO-1H-PYRROLO[2,1-A]ISOINDOL-9-YL)-3-PYRIDIN-2-YL-UREA _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1GIH _cell.length_a 73.87 _cell.length_b 72.67 _cell.length_c 53.85 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1GIH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H16 N4 O2' _chem_comp.formula_weight 308.335 _chem_comp.id 1PU _chem_comp.mon_nstd_flag . _chem_comp.name 1-(5-OXO-2,3,5,9B-TETRAHYDRO-1H-PYRROLO[2,1-A]ISOINDOL-9-YL)-3-PYRIDIN-2-YL-UREA _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "N'-(PYRROLIDINO[2,1-B]ISOINDOLIN-4-ON-8-YL)-N-(PYRIDIN-2-YL)UREA" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 1PU sing 1 n n C1 C3 1PU doub 2 n y C1 C4 1PU sing 3 n y C2 C6 1PU sing 4 n n C2 N5 1PU sing 5 n n C2 H2 1PU sing 6 n n C3 C7 1PU sing 7 n n C3 C8 1PU sing 8 n y C7 N5 1PU sing 9 n n C7 O13 1PU doub 10 n n C6 C12 1PU sing 11 n n C6 H61 1PU sing 12 n n C6 H62 1PU sing 13 n n C4 C9 1PU doub 14 n y C4 N10 1PU sing 15 n n N5 C11 1PU sing 16 n n C8 C14 1PU doub 17 n y C8 H8 1PU sing 18 n n C9 C14 1PU sing 19 n y C9 H9 1PU sing 20 n n N10 C15 1PU sing 21 n n N10 H10 1PU sing 22 n n C11 C12 1PU sing 23 n n C11 H111 1PU sing 24 n n C11 H112 1PU sing 25 n n C12 H121 1PU sing 26 n n C12 H122 1PU sing 27 n n C14 H14 1PU sing 28 n n C15 N16 1PU sing 29 n n C15 O17 1PU doub 30 n n N16 C18 1PU sing 31 n n N16 H16 1PU sing 32 n n C18 C19 1PU doub 33 n y C18 N20 1PU sing 34 n y C19 C21 1PU sing 35 n y C19 H19 1PU sing 36 n n N20 C22 1PU doub 37 n y C21 C23 1PU doub 38 n y C21 H21 1PU sing 39 n n C22 C23 1PU sing 40 n y C22 H22 1PU sing 41 n n C23 H23 1PU sing 42 n n # _atom_sites.entry_id 1GIH _atom_sites.fract_transf_matrix[1][1] 0.013537 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013761 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01857 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1PU A 1 501 501 1PU IN1 . C 3 HOH A 1 601 601 HOH HOH . C 3 HOH A 2 602 602 HOH HOH . C 3 HOH A 3 603 603 HOH HOH . C 3 HOH A 4 604 604 HOH HOH . C 3 HOH A 5 605 605 HOH HOH . C 3 HOH A 6 606 606 HOH HOH . C 3 HOH A 7 607 607 HOH HOH . C 3 HOH A 8 608 608 HOH HOH . C 3 HOH A 9 609 609 HOH HOH . C 3 HOH A 10 610 610 HOH HOH . C 3 HOH A 11 611 611 HOH HOH . C 3 HOH A 12 612 612 HOH HOH . C 3 HOH A 13 613 613 HOH HOH . C 3 HOH A 14 614 614 HOH HOH . C 3 HOH A 15 615 615 HOH HOH . C 3 HOH A 16 616 616 HOH HOH . C 3 HOH A 17 617 617 HOH HOH . C 3 HOH A 18 618 618 HOH HOH . C 3 HOH A 19 619 619 HOH HOH . C 3 HOH A 20 620 620 HOH HOH . C 3 HOH A 21 621 621 HOH HOH . C 3 HOH A 22 622 622 HOH HOH . C 3 HOH A 23 623 623 HOH HOH . C 3 HOH A 24 624 624 HOH HOH . C 3 HOH A 25 625 625 HOH HOH . C 3 HOH A 26 626 626 HOH HOH . C 3 HOH A 27 627 627 HOH HOH . C 3 HOH A 28 628 628 HOH HOH . C 3 HOH A 29 629 629 HOH HOH . C 3 HOH A 30 630 630 HOH HOH . C 3 HOH A 31 631 631 HOH HOH . C 3 HOH A 32 632 632 HOH HOH . C 3 HOH A 33 633 633 HOH HOH . C 3 HOH A 34 634 634 HOH HOH . C 3 HOH A 35 635 635 HOH HOH . C 3 HOH A 36 636 636 HOH HOH . C 3 HOH A 37 637 637 HOH HOH . C 3 HOH A 38 638 638 HOH HOH . C 3 HOH A 39 639 639 HOH HOH . C 3 HOH A 40 640 640 HOH HOH . C 3 HOH A 41 641 641 HOH HOH . C 3 HOH A 42 642 642 HOH HOH . C 3 HOH A 43 643 643 HOH HOH . C 3 HOH A 44 644 644 HOH HOH . C 3 HOH A 45 645 645 HOH HOH . C 3 HOH A 46 646 646 HOH HOH . C 3 HOH A 47 647 647 HOH HOH . C 3 HOH A 48 648 648 HOH HOH . C 3 HOH A 49 649 649 HOH HOH . C 3 HOH A 50 650 650 HOH HOH . C 3 HOH A 51 651 651 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 1PU . . . B 2 5.49 10.016 27.819 1 14.59 ? C1 1PU 501 A 1 HETATM 2 C C2 1PU . . . B 2 6.953 10.387 27.653 1 11.95 ? C2 1PU 501 A 1 HETATM 3 C C3 1PU . . . B 2 5.034 10.623 29.029 1 15.75 ? C3 1PU 501 A 1 HETATM 4 C C7 1PU . . . B 2 6.128 11.366 29.647 1 17.94 ? C7 1PU 501 A 1 HETATM 5 C C6 1PU . . . B 2 7.341 11.405 26.57 1 15.34 ? C6 1PU 501 A 1 HETATM 6 C C4 1PU . . . B 2 4.613 9.232 27.035 1 15.4 ? C4 1PU 501 A 1 HETATM 7 N N5 1PU . . . B 2 7.196 11.206 28.838 1 16.4 ? N5 1PU 501 A 1 HETATM 8 C C8 1PU . . . B 2 3.705 10.464 29.46 1 13.28 ? C8 1PU 501 A 1 HETATM 9 C C9 1PU . . . B 2 3.287 9.093 27.493 1 15.99 ? C9 1PU 501 A 1 HETATM 10 N N10 1PU . . . B 2 5.107 8.619 25.819 1 14.76 ? N10 1PU 501 A 1 HETATM 11 C C11 1PU . . . B 2 8.251 12.219 28.697 1 14.89 ? C11 1PU 501 A 1 HETATM 12 C C12 1PU . . . B 2 8.53 12.166 27.188 1 12.59 ? C12 1PU 501 A 1 HETATM 13 O O13 1PU . . . B 2 6.061 11.989 30.681 1 26.51 ? O13 1PU 501 A 1 HETATM 14 C C14 1PU . . . B 2 2.847 9.698 28.682 1 17.01 ? C14 1PU 501 A 1 HETATM 15 C C15 1PU . . . B 2 4.553 7.831 24.914 1 17.53 ? C15 1PU 501 A 1 HETATM 16 N N16 1PU . . . B 2 5.341 7.404 23.937 1 14.52 ? N16 1PU 501 A 1 HETATM 17 O O17 1PU . . . B 2 3.359 7.522 24.975 1 18.2 ? O17 1PU 501 A 1 HETATM 18 C C18 1PU . . . B 2 6.664 7.738 23.54 1 15.19 ? C18 1PU 501 A 1 HETATM 19 C C19 1PU . . . B 2 7.407 7.003 22.616 1 17.51 ? C19 1PU 501 A 1 HETATM 20 N N20 1PU . . . B 2 7.185 8.823 24.114 1 20.74 ? N20 1PU 501 A 1 HETATM 21 C C21 1PU . . . B 2 8.716 7.44 22.317 1 22.55 ? C21 1PU 501 A 1 HETATM 22 C C22 1PU . . . B 2 8.415 9.259 23.85 1 17.62 ? C22 1PU 501 A 1 HETATM 23 C C23 1PU . . . B 2 9.232 8.584 22.942 1 13.07 ? C23 1PU 501 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #