data_1GII # _model_server_result.job_id ZNzjJeW4kJLdqmk4_Pi7UQ _model_server_result.datetime_utc '2025-07-31 06:34:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1gii # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 1GII # _exptl.entry_id 1GII _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 308.335 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(5-OXO-2,3,5,9B-TETRAHYDRO-1H-PYRROLO[2,1-A]ISOINDOL-9-YL)-3-PYRIDIN-2-YL-UREA _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1GII _cell.length_a 73.912 _cell.length_b 72.427 _cell.length_c 53.965 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1GII _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H16 N4 O2' _chem_comp.formula_weight 308.335 _chem_comp.id 1PU _chem_comp.mon_nstd_flag . _chem_comp.name 1-(5-OXO-2,3,5,9B-TETRAHYDRO-1H-PYRROLO[2,1-A]ISOINDOL-9-YL)-3-PYRIDIN-2-YL-UREA _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "N'-(PYRROLIDINO[2,1-B]ISOINDOLIN-4-ON-8-YL)-N-(PYRIDIN-2-YL)UREA" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 1PU sing 1 n n C1 C3 1PU doub 2 n y C1 C4 1PU sing 3 n y C2 C6 1PU sing 4 n n C2 N5 1PU sing 5 n n C2 H2 1PU sing 6 n n C3 C7 1PU sing 7 n n C3 C8 1PU sing 8 n y C7 N5 1PU sing 9 n n C7 O13 1PU doub 10 n n C6 C12 1PU sing 11 n n C6 H61 1PU sing 12 n n C6 H62 1PU sing 13 n n C4 C9 1PU doub 14 n y C4 N10 1PU sing 15 n n N5 C11 1PU sing 16 n n C8 C14 1PU doub 17 n y C8 H8 1PU sing 18 n n C9 C14 1PU sing 19 n y C9 H9 1PU sing 20 n n N10 C15 1PU sing 21 n n N10 H10 1PU sing 22 n n C11 C12 1PU sing 23 n n C11 H111 1PU sing 24 n n C11 H112 1PU sing 25 n n C12 H121 1PU sing 26 n n C12 H122 1PU sing 27 n n C14 H14 1PU sing 28 n n C15 N16 1PU sing 29 n n C15 O17 1PU doub 30 n n N16 C18 1PU sing 31 n n N16 H16 1PU sing 32 n n C18 C19 1PU doub 33 n y C18 N20 1PU sing 34 n y C19 C21 1PU sing 35 n y C19 H19 1PU sing 36 n n N20 C22 1PU doub 37 n y C21 C23 1PU doub 38 n y C21 H21 1PU sing 39 n n C22 C23 1PU sing 40 n y C22 H22 1PU sing 41 n n C23 H23 1PU sing 42 n n # _atom_sites.entry_id 1GII _atom_sites.fract_transf_matrix[1][1] 0.01353 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013807 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018531 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1PU A 1 501 501 1PU 1PU . C 3 HOH A 1 601 601 HOH HOH . C 3 HOH A 2 602 602 HOH HOH . C 3 HOH A 3 603 603 HOH HOH . C 3 HOH A 4 604 604 HOH HOH . C 3 HOH A 5 605 605 HOH HOH . C 3 HOH A 6 606 606 HOH HOH . C 3 HOH A 7 607 607 HOH HOH . C 3 HOH A 8 608 608 HOH HOH . C 3 HOH A 9 609 609 HOH HOH . C 3 HOH A 10 610 610 HOH HOH . C 3 HOH A 11 611 611 HOH HOH . C 3 HOH A 12 612 612 HOH HOH . C 3 HOH A 13 613 613 HOH HOH . C 3 HOH A 14 614 614 HOH HOH . C 3 HOH A 15 615 615 HOH HOH . C 3 HOH A 16 616 616 HOH HOH . C 3 HOH A 17 617 617 HOH HOH . C 3 HOH A 18 618 618 HOH HOH . C 3 HOH A 19 619 619 HOH HOH . C 3 HOH A 20 620 620 HOH HOH . C 3 HOH A 21 621 621 HOH HOH . C 3 HOH A 22 622 622 HOH HOH . C 3 HOH A 23 623 623 HOH HOH . C 3 HOH A 24 624 624 HOH HOH . C 3 HOH A 25 625 625 HOH HOH . C 3 HOH A 26 626 626 HOH HOH . C 3 HOH A 27 627 627 HOH HOH . C 3 HOH A 28 628 628 HOH HOH . C 3 HOH A 29 629 629 HOH HOH . C 3 HOH A 30 630 630 HOH HOH . C 3 HOH A 31 631 631 HOH HOH . C 3 HOH A 32 632 632 HOH HOH . C 3 HOH A 33 633 633 HOH HOH . C 3 HOH A 34 634 634 HOH HOH . C 3 HOH A 35 635 635 HOH HOH . C 3 HOH A 36 636 636 HOH HOH . C 3 HOH A 37 637 637 HOH HOH . C 3 HOH A 38 638 638 HOH HOH . C 3 HOH A 39 639 639 HOH HOH . C 3 HOH A 40 640 640 HOH HOH . C 3 HOH A 41 641 641 HOH HOH . C 3 HOH A 42 642 642 HOH HOH . C 3 HOH A 43 643 643 HOH HOH . C 3 HOH A 44 644 644 HOH HOH . C 3 HOH A 45 645 645 HOH HOH . C 3 HOH A 46 646 646 HOH HOH . C 3 HOH A 47 647 647 HOH HOH . C 3 HOH A 48 648 648 HOH HOH . C 3 HOH A 49 649 649 HOH HOH . C 3 HOH A 50 650 650 HOH HOH . C 3 HOH A 51 651 651 HOH HOH . C 3 HOH A 52 652 652 HOH HOH . C 3 HOH A 53 653 653 HOH HOH . C 3 HOH A 54 654 654 HOH HOH . C 3 HOH A 55 655 655 HOH HOH . C 3 HOH A 56 656 656 HOH HOH . C 3 HOH A 57 657 657 HOH HOH . C 3 HOH A 58 658 658 HOH HOH . C 3 HOH A 59 659 659 HOH HOH . C 3 HOH A 60 660 660 HOH HOH . C 3 HOH A 61 661 661 HOH HOH . C 3 HOH A 62 662 662 HOH HOH . C 3 HOH A 63 663 663 HOH HOH . C 3 HOH A 64 664 664 HOH HOH . C 3 HOH A 65 665 665 HOH HOH . C 3 HOH A 66 666 666 HOH HOH . C 3 HOH A 67 667 667 HOH HOH . C 3 HOH A 68 668 668 HOH HOH . C 3 HOH A 69 669 669 HOH HOH . C 3 HOH A 70 670 670 HOH HOH . C 3 HOH A 71 671 671 HOH HOH . C 3 HOH A 72 672 672 HOH HOH . C 3 HOH A 73 673 673 HOH HOH . C 3 HOH A 74 674 674 HOH HOH . C 3 HOH A 75 675 675 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 1PU . . . B 2 5.438 9.967 27.643 1 34.65 ? C1 1PU 501 A 1 HETATM 2 C C2 1PU . . . B 2 6.894 10.347 27.483 1 35.66 ? C2 1PU 501 A 1 HETATM 3 C C3 1PU . . . B 2 4.961 10.561 28.832 1 34.86 ? C3 1PU 501 A 1 HETATM 4 C C7 1PU . . . B 2 6.039 11.297 29.467 1 35.98 ? C7 1PU 501 A 1 HETATM 5 C C6 1PU . . . B 2 7.223 11.398 26.398 1 37.14 ? C6 1PU 501 A 1 HETATM 6 C C4 1PU . . . B 2 4.59 9.184 26.849 1 33.36 ? C4 1PU 501 A 1 HETATM 7 N N5 1PU . . . B 2 7.119 11.159 28.681 1 36.81 ? N5 1PU 501 A 1 HETATM 8 C C8 1PU . . . B 2 3.628 10.394 29.238 1 33.26 ? C8 1PU 501 A 1 HETATM 9 C C9 1PU . . . B 2 3.254 9.021 27.265 1 32.86 ? C9 1PU 501 A 1 HETATM 10 N N10 1PU . . . B 2 5.129 8.593 25.667 1 32.54 ? N10 1PU 501 A 1 HETATM 11 C C11 1PU . . . B 2 8.142 12.216 28.546 1 37.46 ? C11 1PU 501 A 1 HETATM 12 C C12 1PU . . . B 2 8.342 12.267 27.016 1 36.75 ? C12 1PU 501 A 1 HETATM 13 O O13 1PU . . . B 2 5.952 11.896 30.487 1 37.82 ? O13 1PU 501 A 1 HETATM 14 C C14 1PU . . . B 2 2.785 9.625 28.441 1 33.37 ? C14 1PU 501 A 1 HETATM 15 C C15 1PU . . . B 2 4.6 7.766 24.797 1 31.96 ? C15 1PU 501 A 1 HETATM 16 N N16 1PU . . . B 2 5.323 7.472 23.731 1 30.72 ? N16 1PU 501 A 1 HETATM 17 O O17 1PU . . . B 2 3.468 7.331 24.974 1 28.84 ? O17 1PU 501 A 1 HETATM 18 C C18 1PU . . . B 2 6.628 7.85 23.314 1 33.06 ? C18 1PU 501 A 1 HETATM 19 C C19 1PU . . . B 2 7.231 7.416 22.118 1 33.98 ? C19 1PU 501 A 1 HETATM 20 N N20 1PU . . . B 2 7.278 8.661 24.133 1 35.11 ? N20 1PU 501 A 1 HETATM 21 C C21 1PU . . . B 2 8.532 7.862 21.82 1 35.96 ? C21 1PU 501 A 1 HETATM 22 C C22 1PU . . . B 2 8.514 9.098 23.876 1 35.43 ? C22 1PU 501 A 1 HETATM 23 C C23 1PU . . . B 2 9.192 8.715 22.709 1 34.68 ? C23 1PU 501 A 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 23 #