data_1GIJ # _model_server_result.job_id hdXKCJ8I9yJiEL7-KNS3ww _model_server_result.datetime_utc '2024-12-23 07:23:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1gij # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 1GIJ # _exptl.entry_id 1GIJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 366.417 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(5-OXO-2,3,5,9B-TETRAHYDRO-1H-PYRROLO[2,1-A]ISOINDOL-9-YL)-3-(5-PYRROLIDIN-2-YL-1H-PYRAZOL-3-YL)-UREA _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1GIJ _cell.length_a 74.02 _cell.length_b 72.069 _cell.length_c 53.982 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1GIJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H22 N6 O2' _chem_comp.formula_weight 366.417 _chem_comp.id 2PU _chem_comp.mon_nstd_flag . _chem_comp.name 1-(5-OXO-2,3,5,9B-TETRAHYDRO-1H-PYRROLO[2,1-A]ISOINDOL-9-YL)-3-(5-PYRROLIDIN-2-YL-1H-PYRAZOL-3-YL)-UREA _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "N'-(PYRROLIDINO[2,1-B]ISOINDOLIN-4-ON-8-YL)-N-(5-(PYRROLIDIN-2-YL)PYRAZOL-3-YL)UREA" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 2PU sing 1 n n C1 C3 2PU doub 2 n y C1 C4 2PU sing 3 n y C2 N5 2PU sing 4 n n C2 C6 2PU sing 5 n n C2 H2 2PU sing 6 n n C3 C7 2PU sing 7 n n C3 C8 2PU sing 8 n y C4 C9 2PU doub 9 n y C4 N10 2PU sing 10 n n N5 C7 2PU sing 11 n n N5 C11 2PU sing 12 n n C6 C12 2PU sing 13 n n C6 H61 2PU sing 14 n n C6 H62 2PU sing 15 n n C7 O13 2PU doub 16 n n C8 C14 2PU doub 17 n y C8 H8 2PU sing 18 n n C9 C14 2PU sing 19 n y C9 H9 2PU sing 20 n n N10 C15 2PU sing 21 n n N10 H10 2PU sing 22 n n C11 C12 2PU sing 23 n n C11 H111 2PU sing 24 n n C11 H112 2PU sing 25 n n C12 H121 2PU sing 26 n n C12 H122 2PU sing 27 n n C14 H14 2PU sing 28 n n C15 N16 2PU sing 29 n n C15 O17 2PU doub 30 n n N16 C18 2PU sing 31 n n N16 H16 2PU sing 32 n n C18 C19 2PU sing 33 n y C18 N20 2PU doub 34 n y C19 C21 2PU doub 35 n y C19 H19 2PU sing 36 n n N20 N22 2PU sing 37 n y C21 N22 2PU sing 38 n y C21 C23 2PU sing 39 n n N22 H22 2PU sing 40 n n C23 C24 2PU sing 41 n n C23 N25 2PU sing 42 n n C23 H23 2PU sing 43 n n C24 C26 2PU sing 44 n n C24 H241 2PU sing 45 n n C24 H242 2PU sing 46 n n N25 C27 2PU sing 47 n n N25 H25 2PU sing 48 n n C26 C27 2PU sing 49 n n C26 H261 2PU sing 50 n n C26 H262 2PU sing 51 n n C27 H271 2PU sing 52 n n C27 H272 2PU sing 53 n n # _atom_sites.entry_id 1GIJ _atom_sites.fract_transf_matrix[1][1] 0.01351 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013876 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018525 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2PU A 1 501 501 2PU 2PU . C 3 HOH A 1 601 601 HOH HOH . C 3 HOH A 2 602 602 HOH HOH . C 3 HOH A 3 603 603 HOH HOH . C 3 HOH A 4 604 604 HOH HOH . C 3 HOH A 5 605 605 HOH HOH . C 3 HOH A 6 606 606 HOH HOH . C 3 HOH A 7 607 607 HOH HOH . C 3 HOH A 8 608 608 HOH HOH . C 3 HOH A 9 609 609 HOH HOH . C 3 HOH A 10 610 610 HOH HOH . C 3 HOH A 11 611 611 HOH HOH . C 3 HOH A 12 612 612 HOH HOH . C 3 HOH A 13 613 613 HOH HOH . C 3 HOH A 14 614 614 HOH HOH . C 3 HOH A 15 615 615 HOH HOH . C 3 HOH A 16 616 616 HOH HOH . C 3 HOH A 17 617 617 HOH HOH . C 3 HOH A 18 618 618 HOH HOH . C 3 HOH A 19 619 619 HOH HOH . C 3 HOH A 20 620 620 HOH HOH . C 3 HOH A 21 621 621 HOH HOH . C 3 HOH A 22 622 622 HOH HOH . C 3 HOH A 23 623 623 HOH HOH . C 3 HOH A 24 624 624 HOH HOH . C 3 HOH A 25 625 625 HOH HOH . C 3 HOH A 26 626 626 HOH HOH . C 3 HOH A 27 627 627 HOH HOH . C 3 HOH A 28 628 628 HOH HOH . C 3 HOH A 29 629 629 HOH HOH . C 3 HOH A 30 630 630 HOH HOH . C 3 HOH A 31 631 631 HOH HOH . C 3 HOH A 32 632 632 HOH HOH . C 3 HOH A 33 633 633 HOH HOH . C 3 HOH A 34 634 634 HOH HOH . C 3 HOH A 35 635 635 HOH HOH . C 3 HOH A 36 636 636 HOH HOH . C 3 HOH A 37 637 637 HOH HOH . C 3 HOH A 38 638 638 HOH HOH . C 3 HOH A 39 639 639 HOH HOH . C 3 HOH A 40 640 640 HOH HOH . C 3 HOH A 41 641 641 HOH HOH . C 3 HOH A 42 642 642 HOH HOH . C 3 HOH A 43 643 643 HOH HOH . C 3 HOH A 44 644 644 HOH HOH . C 3 HOH A 45 645 645 HOH HOH . C 3 HOH A 46 646 646 HOH HOH . C 3 HOH A 47 647 647 HOH HOH . C 3 HOH A 48 648 648 HOH HOH . C 3 HOH A 49 649 649 HOH HOH . C 3 HOH A 50 650 650 HOH HOH . C 3 HOH A 51 651 651 HOH HOH . C 3 HOH A 52 652 652 HOH HOH . C 3 HOH A 53 653 653 HOH HOH . C 3 HOH A 54 654 654 HOH HOH . C 3 HOH A 55 655 655 HOH HOH . C 3 HOH A 56 656 656 HOH HOH . C 3 HOH A 57 657 657 HOH HOH . C 3 HOH A 58 658 658 HOH HOH . C 3 HOH A 59 659 659 HOH HOH . C 3 HOH A 60 660 660 HOH HOH . C 3 HOH A 61 661 661 HOH HOH . C 3 HOH A 62 662 662 HOH HOH . C 3 HOH A 63 663 663 HOH HOH . C 3 HOH A 64 664 664 HOH HOH . C 3 HOH A 65 665 665 HOH HOH . C 3 HOH A 66 666 666 HOH HOH . C 3 HOH A 67 667 667 HOH HOH . C 3 HOH A 68 668 668 HOH HOH . C 3 HOH A 69 669 669 HOH HOH . C 3 HOH A 70 670 670 HOH HOH . C 3 HOH A 71 671 671 HOH HOH . C 3 HOH A 72 672 672 HOH HOH . C 3 HOH A 73 673 673 HOH HOH . C 3 HOH A 74 674 674 HOH HOH . C 3 HOH A 75 675 675 HOH HOH . C 3 HOH A 76 676 676 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 2PU . . . B 2 5.314 10.427 27.521 1 22.12 ? C1 2PU 501 A 1 HETATM 2 C C2 2PU . . . B 2 6.638 11.202 27.221 1 22.68 ? C2 2PU 501 A 1 HETATM 3 C C3 2PU . . . B 2 4.819 10.928 28.791 1 24.63 ? C3 2PU 501 A 1 HETATM 4 C C4 2PU . . . B 2 4.578 9.427 26.821 1 19.62 ? C4 2PU 501 A 1 HETATM 5 N N5 2PU . . . B 2 6.772 12.064 28.412 1 26.71 ? N5 2PU 501 A 1 HETATM 6 C C6 2PU . . . B 2 8.024 10.587 27.177 1 27.91 ? C6 2PU 501 A 1 HETATM 7 C C7 2PU . . . B 2 5.762 11.946 29.344 1 26.18 ? C7 2PU 501 A 1 HETATM 8 C C8 2PU . . . B 2 3.605 10.447 29.347 1 21.76 ? C8 2PU 501 A 1 HETATM 9 C C9 2PU . . . B 2 3.35 8.96 27.389 1 19.06 ? C9 2PU 501 A 1 HETATM 10 N N10 2PU . . . B 2 4.993 8.832 25.576 1 18.65 ? N10 2PU 501 A 1 HETATM 11 C C11 2PU . . . B 2 8.141 12.442 28.736 1 26.85 ? C11 2PU 501 A 1 HETATM 12 C C12 2PU . . . B 2 8.922 11.733 27.603 1 23.79 ? C12 2PU 501 A 1 HETATM 13 O O13 2PU . . . B 2 5.62 12.543 30.429 1 28.02 ? O13 2PU 501 A 1 HETATM 14 C C14 2PU . . . B 2 2.867 9.456 28.621 1 20.48 ? C14 2PU 501 A 1 HETATM 15 C C15 2PU . . . B 2 4.34 7.987 24.769 1 19.13 ? C15 2PU 501 A 1 HETATM 16 N N16 2PU . . . B 2 4.972 7.636 23.657 1 20.17 ? N16 2PU 501 A 1 HETATM 17 O O17 2PU . . . B 2 3.186 7.609 25.05 1 18.08 ? O17 2PU 501 A 1 HETATM 18 C C18 2PU . . . B 2 6.287 7.979 23.382 1 20.86 ? C18 2PU 501 A 1 HETATM 19 C C19 2PU . . . B 2 7.098 7.364 22.486 1 23.1 ? C19 2PU 501 A 1 HETATM 20 N N20 2PU . . . B 2 6.968 8.997 23.998 1 21.51 ? N20 2PU 501 A 1 HETATM 21 C C21 2PU . . . B 2 8.331 8.043 22.573 1 23.42 ? C21 2PU 501 A 1 HETATM 22 N N22 2PU . . . B 2 8.22 9.035 23.51 1 22.51 ? N22 2PU 501 A 1 HETATM 23 C C23 2PU . . . B 2 9.591 7.725 21.802 1 26.07 ? C23 2PU 501 A 1 HETATM 24 C C24 2PU . . . B 2 10.873 8.47 22.232 1 30.66 ? C24 2PU 501 A 1 HETATM 25 N N25 2PU . . . B 2 9.626 7.752 20.367 1 26.9 ? N25 2PU 501 A 1 HETATM 26 C C26 2PU . . . B 2 11.912 8.016 21.147 1 30.74 ? C26 2PU 501 A 1 HETATM 27 C C27 2PU . . . B 2 11.041 7.412 20 1 28.65 ? C27 2PU 501 A 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 27 #