data_1GIN # _model_server_result.job_id MHScscdYWbi_X8M98Z2HLg _model_server_result.datetime_utc '2024-11-29 11:41:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1gin # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":440}' # _entry.id 1GIN # _exptl.entry_id 1GIN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 348.206 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'INOSINIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1GIN _cell.length_a 81.42 _cell.length_b 81.42 _cell.length_c 158.71 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1GIN _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 105.806667 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 13 A ASP 13 1_555 B MG MG . A MG 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc2 A O GLY 40 A GLY 40 1_555 B MG MG . A MG 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc3 F O2B GDP . A GDP 432 1_555 B MG MG . A MG 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? metalc ? metalc4 F O2A GDP . A GDP 432 1_555 B MG MG . A MG 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? metalc ? metalc5 C O2 NO3 . A NO3 433 1_555 B MG MG . A MG 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc6 C O3 NO3 . A NO3 433 1_555 B MG MG . A MG 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.085 ? metalc ? metalc7 C N NO3 . A NO3 433 1_555 B MG MG . A MG 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.999 ? metalc ? metalc8 B MG MG . A MG 435 1_555 D O HDA . A HDA 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? # _chem_comp.formula 'C10 H13 N4 O8 P' _chem_comp.formula_weight 348.206 _chem_comp.id IMP _chem_comp.mon_nstd_flag n _chem_comp.name 'INOSINIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P IMP doub 230 n n P O2P IMP sing 231 n n P O3P IMP sing 232 n n P O5' IMP sing 233 n n O2P HOP2 IMP sing 234 n n O3P HOP3 IMP sing 235 n n O5' C5' IMP sing 236 n n C5' C4' IMP sing 237 n n C5' "H5'1" IMP sing 238 n n C5' "H5'2" IMP sing 239 n n C4' O4' IMP sing 240 n n C4' C3' IMP sing 241 n n C4' H4' IMP sing 242 n n O4' C1' IMP sing 243 n n C3' O3' IMP sing 244 n n C3' C2' IMP sing 245 n n C3' H3' IMP sing 246 n n O3' HO3' IMP sing 247 n n C2' O2' IMP sing 248 n n C2' C1' IMP sing 249 n n C2' H2' IMP sing 250 n n O2' HO2' IMP sing 251 n n C1' N9 IMP sing 252 n n C1' H1' IMP sing 253 n n N9 C8 IMP sing 254 n y N9 C4 IMP sing 255 n y C8 N7 IMP doub 256 n y C8 H8 IMP sing 257 n n N7 C5 IMP sing 258 n y C5 C6 IMP sing 259 n n C5 C4 IMP doub 260 n y C6 O6 IMP doub 261 n n C6 N1 IMP sing 262 n n N1 C2 IMP sing 263 n n N1 HN1 IMP sing 264 n n C2 N3 IMP doub 265 n n C2 H2 IMP sing 266 n n N3 C4 IMP sing 267 n n # _atom_sites.entry_id 1GIN _atom_sites.fract_transf_matrix[1][1] 0.012282 _atom_sites.fract_transf_matrix[1][2] 0.007091 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014182 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006301 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 435 435 MG MG . C 3 NO3 A 1 433 433 NO3 NO3 . D 4 HDA A 1 438 438 HDA HDA . E 5 IMP A 1 440 440 IMP IMP . F 6 GDP A 1 432 432 GDP GDP . G 7 HOH A 1 441 441 HOH HOH . G 7 HOH A 2 442 442 HOH HOH . G 7 HOH A 3 443 443 HOH HOH . G 7 HOH A 4 444 444 HOH HOH . G 7 HOH A 5 445 445 HOH HOH . G 7 HOH A 6 446 446 HOH HOH . G 7 HOH A 7 447 447 HOH HOH . G 7 HOH A 8 448 448 HOH HOH . G 7 HOH A 9 449 449 HOH HOH . G 7 HOH A 10 450 450 HOH HOH . G 7 HOH A 11 451 451 HOH HOH . G 7 HOH A 12 452 452 HOH HOH . G 7 HOH A 13 453 453 HOH HOH . G 7 HOH A 14 454 454 HOH HOH . G 7 HOH A 15 455 455 HOH HOH . G 7 HOH A 16 456 456 HOH HOH . G 7 HOH A 17 457 457 HOH HOH . G 7 HOH A 18 458 458 HOH HOH . G 7 HOH A 19 459 459 HOH HOH . G 7 HOH A 20 460 460 HOH HOH . G 7 HOH A 21 461 461 HOH HOH . G 7 HOH A 22 462 462 HOH HOH . G 7 HOH A 23 463 463 HOH HOH . G 7 HOH A 24 464 464 HOH HOH . G 7 HOH A 25 465 465 HOH HOH . G 7 HOH A 26 466 466 HOH HOH . G 7 HOH A 27 467 467 HOH HOH . G 7 HOH A 28 468 468 HOH HOH . G 7 HOH A 29 469 469 HOH HOH . G 7 HOH A 30 470 470 HOH HOH . G 7 HOH A 31 471 471 HOH HOH . G 7 HOH A 32 472 472 HOH HOH . G 7 HOH A 33 473 473 HOH HOH . G 7 HOH A 34 474 474 HOH HOH . G 7 HOH A 35 475 475 HOH HOH . G 7 HOH A 36 476 476 HOH HOH . G 7 HOH A 37 477 477 HOH HOH . G 7 HOH A 38 478 478 HOH HOH . G 7 HOH A 39 479 479 HOH HOH . G 7 HOH A 40 480 480 HOH HOH . G 7 HOH A 41 481 481 HOH HOH . G 7 HOH A 42 482 482 HOH HOH . G 7 HOH A 43 483 483 HOH HOH . G 7 HOH A 44 484 484 HOH HOH . G 7 HOH A 45 485 485 HOH HOH . G 7 HOH A 46 486 486 HOH HOH . G 7 HOH A 47 487 487 HOH HOH . G 7 HOH A 48 488 488 HOH HOH . G 7 HOH A 49 489 489 HOH HOH . G 7 HOH A 50 490 490 HOH HOH . G 7 HOH A 51 491 491 HOH HOH . G 7 HOH A 52 492 492 HOH HOH . G 7 HOH A 53 493 493 HOH HOH . G 7 HOH A 54 494 494 HOH HOH . G 7 HOH A 55 495 495 HOH HOH . G 7 HOH A 56 496 496 HOH HOH . G 7 HOH A 57 497 497 HOH HOH . G 7 HOH A 58 498 498 HOH HOH . G 7 HOH A 59 499 499 HOH HOH . G 7 HOH A 60 500 500 HOH HOH . G 7 HOH A 61 501 501 HOH HOH . G 7 HOH A 62 502 502 HOH HOH . G 7 HOH A 63 503 503 HOH HOH . G 7 HOH A 64 504 504 HOH HOH . G 7 HOH A 65 505 505 HOH HOH . G 7 HOH A 66 506 506 HOH HOH . G 7 HOH A 67 507 507 HOH HOH . G 7 HOH A 68 508 508 HOH HOH . G 7 HOH A 69 509 509 HOH HOH . G 7 HOH A 70 510 510 HOH HOH . G 7 HOH A 71 511 511 HOH HOH . G 7 HOH A 72 512 512 HOH HOH . G 7 HOH A 73 513 513 HOH HOH . G 7 HOH A 74 514 514 HOH HOH . G 7 HOH A 75 515 515 HOH HOH . G 7 HOH A 76 516 516 HOH HOH . G 7 HOH A 77 517 517 HOH HOH . G 7 HOH A 78 518 518 HOH HOH . G 7 HOH A 79 519 519 HOH HOH . G 7 HOH A 80 520 520 HOH HOH . G 7 HOH A 81 521 521 HOH HOH . G 7 HOH A 82 522 522 HOH HOH . G 7 HOH A 83 523 523 HOH HOH . G 7 HOH A 84 524 524 HOH HOH . G 7 HOH A 85 525 525 HOH HOH . G 7 HOH A 86 526 526 HOH HOH . G 7 HOH A 87 527 527 HOH HOH . G 7 HOH A 88 528 528 HOH HOH . G 7 HOH A 89 529 529 HOH HOH . G 7 HOH A 90 530 530 HOH HOH . G 7 HOH A 91 531 531 HOH HOH . G 7 HOH A 92 532 532 HOH HOH . G 7 HOH A 93 533 533 HOH HOH . G 7 HOH A 94 534 534 HOH HOH . G 7 HOH A 95 535 535 HOH HOH . G 7 HOH A 96 536 536 HOH HOH . G 7 HOH A 97 537 537 HOH HOH . G 7 HOH A 98 538 538 HOH HOH . G 7 HOH A 99 539 539 HOH HOH . G 7 HOH A 100 540 540 HOH HOH . G 7 HOH A 101 541 541 HOH HOH . G 7 HOH A 102 542 542 HOH HOH . G 7 HOH A 103 543 543 HOH HOH . G 7 HOH A 104 544 544 HOH HOH . G 7 HOH A 105 545 545 HOH HOH . G 7 HOH A 106 546 546 HOH HOH . G 7 HOH A 107 547 547 HOH HOH . G 7 HOH A 108 548 548 HOH HOH . G 7 HOH A 109 549 549 HOH HOH . G 7 HOH A 110 550 550 HOH HOH . G 7 HOH A 111 551 551 HOH HOH . G 7 HOH A 112 552 552 HOH HOH . G 7 HOH A 113 553 553 HOH HOH . G 7 HOH A 114 554 554 HOH HOH . G 7 HOH A 115 555 555 HOH HOH . G 7 HOH A 116 556 556 HOH HOH . G 7 HOH A 117 557 557 HOH HOH . G 7 HOH A 118 558 558 HOH HOH . G 7 HOH A 119 559 559 HOH HOH . G 7 HOH A 120 560 560 HOH HOH . G 7 HOH A 121 561 561 HOH HOH . G 7 HOH A 122 562 562 HOH HOH . G 7 HOH A 123 563 563 HOH HOH . G 7 HOH A 124 564 564 HOH HOH . G 7 HOH A 125 565 565 HOH HOH . G 7 HOH A 126 566 566 HOH HOH . G 7 HOH A 127 567 567 HOH HOH . G 7 HOH A 128 568 568 HOH HOH . G 7 HOH A 129 569 569 HOH HOH . G 7 HOH A 130 570 570 HOH HOH . G 7 HOH A 131 571 571 HOH HOH . G 7 HOH A 132 572 572 HOH HOH . G 7 HOH A 133 573 573 HOH HOH . G 7 HOH A 134 574 574 HOH HOH . G 7 HOH A 135 575 575 HOH HOH . G 7 HOH A 136 576 576 HOH HOH . G 7 HOH A 137 577 577 HOH HOH . G 7 HOH A 138 578 578 HOH HOH . G 7 HOH A 139 579 579 HOH HOH . G 7 HOH A 140 580 580 HOH HOH . G 7 HOH A 141 581 581 HOH HOH . G 7 HOH A 142 582 582 HOH HOH . G 7 HOH A 143 583 583 HOH HOH . G 7 HOH A 144 584 584 HOH HOH . G 7 HOH A 145 585 585 HOH HOH . G 7 HOH A 146 586 586 HOH HOH . G 7 HOH A 147 587 587 HOH HOH . G 7 HOH A 148 588 588 HOH HOH . G 7 HOH A 149 589 589 HOH HOH . G 7 HOH A 150 590 590 HOH HOH . G 7 HOH A 151 591 591 HOH HOH . G 7 HOH A 152 592 592 HOH HOH . G 7 HOH A 153 593 593 HOH HOH . G 7 HOH A 154 594 594 HOH HOH . G 7 HOH A 155 595 595 HOH HOH . G 7 HOH A 156 596 596 HOH HOH . G 7 HOH A 157 597 597 HOH HOH . G 7 HOH A 158 598 598 HOH HOH . G 7 HOH A 159 599 599 HOH HOH . G 7 HOH A 160 600 600 HOH HOH . G 7 HOH A 161 601 601 HOH HOH . G 7 HOH A 162 602 602 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P IMP . . . E 5 -16.398 54.567 49.927 1 27.73 ? P IMP 440 A 1 HETATM 2 O O1P IMP . . . E 5 -16.259 55.394 48.701 1 27.59 ? O1P IMP 440 A 1 HETATM 3 O O2P IMP . . . E 5 -17.67 54.572 50.684 1 27.56 ? O2P IMP 440 A 1 HETATM 4 O O3P IMP . . . E 5 -15.998 53.046 49.551 1 27.98 ? O3P IMP 440 A 1 HETATM 5 O O5' IMP . . . E 5 -15.233 55.025 50.933 1 28.21 ? O5' IMP 440 A 1 HETATM 6 C C5' IMP . . . E 5 -15.463 55.079 52.346 1 29.03 ? C5' IMP 440 A 1 HETATM 7 C C4' IMP . . . E 5 -14.172 55.006 53.063 1 30.05 ? C4' IMP 440 A 1 HETATM 8 O O4' IMP . . . E 5 -13.488 53.773 52.59 1 31.57 ? O4' IMP 440 A 1 HETATM 9 C C3' IMP . . . E 5 -13.151 56.072 52.803 1 30.33 ? C3' IMP 440 A 1 HETATM 10 O O3' IMP . . . E 5 -12.237 56.131 53.919 1 31.31 ? O3' IMP 440 A 1 HETATM 11 C C2' IMP . . . E 5 -12.372 55.544 51.615 1 30.52 ? C2' IMP 440 A 1 HETATM 12 O O2' IMP . . . E 5 -11.092 56.091 51.473 1 30.36 ? O2' IMP 440 A 1 HETATM 13 C C1' IMP . . . E 5 -12.205 54.035 51.863 1 30.96 ? C1' IMP 440 A 1 HETATM 14 N N9 IMP . . . E 5 -12.064 53.35 50.648 1 30.67 ? N9 IMP 440 A 1 HETATM 15 C C8 IMP . . . E 5 -13.041 53.097 49.705 1 30.72 ? C8 IMP 440 A 1 HETATM 16 N N7 IMP . . . E 5 -12.655 52.502 48.615 1 31.07 ? N7 IMP 440 A 1 HETATM 17 C C5 IMP . . . E 5 -11.263 52.34 48.884 1 31.09 ? C5 IMP 440 A 1 HETATM 18 C C6 IMP . . . E 5 -10.196 51.734 48.104 1 31.4 ? C6 IMP 440 A 1 HETATM 19 O O6 IMP . . . E 5 -10.315 51.073 47.069 1 31.6 ? O6 IMP 440 A 1 HETATM 20 N N1 IMP . . . E 5 -8.94 51.824 48.717 1 31.58 ? N1 IMP 440 A 1 HETATM 21 C C2 IMP . . . E 5 -8.706 52.359 49.953 1 30.31 ? C2 IMP 440 A 1 HETATM 22 N N3 IMP . . . E 5 -9.743 52.864 50.61 1 30.64 ? N3 IMP 440 A 1 HETATM 23 C C4 IMP . . . E 5 -10.935 52.856 50.086 1 30.24 ? C4 IMP 440 A 1 HETATM 24 H "H5'1" IMP . . . E 5 -15.945 55.999 52.645 1 0 ? "H5'1" IMP 440 A 1 HETATM 25 H "H5'2" IMP . . . E 5 -16.076 54.235 52.666 1 0 ? "H5'2" IMP 440 A 1 HETATM 26 H H4' IMP . . . E 5 -14.358 54.914 54.132 1 0 ? H4' IMP 440 A 1 HETATM 27 H H3' IMP . . . E 5 -13.577 57.047 52.61 1 0 ? H3' IMP 440 A 1 HETATM 28 H HO3' IMP . . . E 5 -11.357 56.29 53.568 1 0 ? HO3' IMP 440 A 1 HETATM 29 H H2' IMP . . . E 5 -12.974 55.725 50.726 1 0 ? H2' IMP 440 A 1 HETATM 30 H HO2' IMP . . . E 5 -10.628 55.942 52.308 1 0 ? HO2' IMP 440 A 1 HETATM 31 H H1' IMP . . . E 5 -11.355 53.857 52.524 1 0 ? H1' IMP 440 A 1 HETATM 32 H H8 IMP . . . E 5 -14.094 53.18 49.954 1 0 ? H8 IMP 440 A 1 HETATM 33 H HN1 IMP . . . E 5 -8.112 51.548 48.216 1 0 ? HN1 IMP 440 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 33 #