data_1GIR # _model_server_result.job_id i6ziquWTNiIwc6uUJRZ09Q _model_server_result.datetime_utc '2024-12-26 18:38:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1gir # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 1GIR # _exptl.entry_id 1GIR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1GIR _cell.length_a 59.6 _cell.length_b 88.37 _cell.length_c 93.5 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1GIR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 224 n n PA O2A NDP sing 225 n n PA O5B NDP sing 226 n n PA O3 NDP sing 227 n n O2A HOA2 NDP sing 228 n n O5B C5B NDP sing 229 n n C5B C4B NDP sing 230 n n C5B H51A NDP sing 231 n n C5B H52A NDP sing 232 n n C4B O4B NDP sing 233 n n C4B C3B NDP sing 234 n n C4B H4B NDP sing 235 n n O4B C1B NDP sing 236 n n C3B O3B NDP sing 237 n n C3B C2B NDP sing 238 n n C3B H3B NDP sing 239 n n O3B HO3A NDP sing 240 n n C2B O2B NDP sing 241 n n C2B C1B NDP sing 242 n n C2B H2B NDP sing 243 n n O2B P2B NDP sing 244 n n C1B N9A NDP sing 245 n n C1B H1B NDP sing 246 n n N9A C8A NDP sing 247 n y N9A C4A NDP sing 248 n y C8A N7A NDP doub 249 n y C8A H8A NDP sing 250 n n N7A C5A NDP sing 251 n y C5A C6A NDP sing 252 n y C5A C4A NDP doub 253 n y C6A N6A NDP sing 254 n n C6A N1A NDP doub 255 n y N6A H61A NDP sing 256 n n N6A H62A NDP sing 257 n n N1A C2A NDP sing 258 n y C2A N3A NDP doub 259 n y C2A H2A NDP sing 260 n n N3A C4A NDP sing 261 n y O3 PN NDP sing 262 n n PN O1N NDP doub 263 n n PN O2N NDP sing 264 n n PN O5D NDP sing 265 n n O2N H21N NDP sing 266 n n O5D C5D NDP sing 267 n n C5D C4D NDP sing 268 n n C5D H51N NDP sing 269 n n C5D H52N NDP sing 270 n n C4D O4D NDP sing 271 n n C4D C3D NDP sing 272 n n C4D H4D NDP sing 273 n n O4D C1D NDP sing 274 n n C3D O3D NDP sing 275 n n C3D C2D NDP sing 276 n n C3D H3D NDP sing 277 n n O3D HO3N NDP sing 278 n n C2D O2D NDP sing 279 n n C2D C1D NDP sing 280 n n C2D H2D NDP sing 281 n n O2D HO2N NDP sing 282 n n C1D N1N NDP sing 283 n n C1D H1D NDP sing 284 n n N1N C2N NDP sing 285 n n N1N C6N NDP sing 286 n n C2N C3N NDP doub 287 n n C2N H2N NDP sing 288 n n C3N C7N NDP sing 289 n n C3N C4N NDP sing 290 n n C7N O7N NDP doub 291 n n C7N N7N NDP sing 292 n n N7N H71N NDP sing 293 n n N7N H72N NDP sing 294 n n C4N C5N NDP sing 295 n n C4N H41N NDP sing 296 n n C4N H42N NDP sing 297 n n C5N C6N NDP doub 298 n n C5N H5N NDP sing 299 n n C6N H6N NDP sing 300 n n P2B O1X NDP doub 301 n n P2B O2X NDP sing 302 n n P2B O3X NDP sing 303 n n O2X HOP2 NDP sing 304 n n O3X HOP3 NDP sing 305 n n # _atom_sites.entry_id 1GIR _atom_sites.fract_transf_matrix[1][1] 0.016779 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011316 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010695 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NDP A 1 500 500 NDP NDP . C 3 HOH A 1 501 1 HOH HOH . C 3 HOH A 2 502 2 HOH HOH . C 3 HOH A 3 503 3 HOH HOH . C 3 HOH A 4 504 4 HOH HOH . C 3 HOH A 5 505 5 HOH HOH . C 3 HOH A 6 506 6 HOH HOH . C 3 HOH A 7 507 7 HOH HOH . C 3 HOH A 8 508 8 HOH HOH . C 3 HOH A 9 509 9 HOH HOH . C 3 HOH A 10 510 10 HOH HOH . C 3 HOH A 11 511 11 HOH HOH . C 3 HOH A 12 512 12 HOH HOH . C 3 HOH A 13 513 13 HOH HOH . C 3 HOH A 14 514 14 HOH HOH . C 3 HOH A 15 515 15 HOH HOH . C 3 HOH A 16 516 16 HOH HOH . C 3 HOH A 17 517 17 HOH HOH . C 3 HOH A 18 518 18 HOH HOH . C 3 HOH A 19 519 19 HOH HOH . C 3 HOH A 20 520 20 HOH HOH . C 3 HOH A 21 521 21 HOH HOH . C 3 HOH A 22 522 22 HOH HOH . C 3 HOH A 23 523 23 HOH HOH . C 3 HOH A 24 524 24 HOH HOH . C 3 HOH A 25 525 25 HOH HOH . C 3 HOH A 26 526 26 HOH HOH . C 3 HOH A 27 527 27 HOH HOH . C 3 HOH A 28 528 28 HOH HOH . C 3 HOH A 29 529 29 HOH HOH . C 3 HOH A 30 530 30 HOH HOH . C 3 HOH A 31 531 31 HOH HOH . C 3 HOH A 32 532 32 HOH HOH . C 3 HOH A 33 533 33 HOH HOH . C 3 HOH A 34 534 34 HOH HOH . C 3 HOH A 35 535 35 HOH HOH . C 3 HOH A 36 536 36 HOH HOH . C 3 HOH A 37 537 37 HOH HOH . C 3 HOH A 38 538 38 HOH HOH . C 3 HOH A 39 539 39 HOH HOH . C 3 HOH A 40 540 40 HOH HOH . C 3 HOH A 41 541 41 HOH HOH . C 3 HOH A 42 542 42 HOH HOH . C 3 HOH A 43 543 43 HOH HOH . C 3 HOH A 44 544 44 HOH HOH . C 3 HOH A 45 545 45 HOH HOH . C 3 HOH A 46 546 46 HOH HOH . C 3 HOH A 47 547 47 HOH HOH . C 3 HOH A 48 548 48 HOH HOH . C 3 HOH A 49 549 49 HOH HOH . C 3 HOH A 50 550 50 HOH HOH . C 3 HOH A 51 551 51 HOH HOH . C 3 HOH A 52 552 52 HOH HOH . C 3 HOH A 53 553 53 HOH HOH . C 3 HOH A 54 554 54 HOH HOH . C 3 HOH A 55 555 55 HOH HOH . C 3 HOH A 56 556 56 HOH HOH . C 3 HOH A 57 557 57 HOH HOH . C 3 HOH A 58 558 58 HOH HOH . C 3 HOH A 59 559 59 HOH HOH . C 3 HOH A 60 560 60 HOH HOH . C 3 HOH A 61 561 61 HOH HOH . C 3 HOH A 62 562 62 HOH HOH . C 3 HOH A 63 563 63 HOH HOH . C 3 HOH A 64 564 64 HOH HOH . C 3 HOH A 65 565 65 HOH HOH . C 3 HOH A 66 566 66 HOH HOH . C 3 HOH A 67 567 67 HOH HOH . C 3 HOH A 68 568 68 HOH HOH . C 3 HOH A 69 569 69 HOH HOH . C 3 HOH A 70 570 70 HOH HOH . C 3 HOH A 71 571 71 HOH HOH . C 3 HOH A 72 572 72 HOH HOH . C 3 HOH A 73 573 73 HOH HOH . C 3 HOH A 74 574 74 HOH HOH . C 3 HOH A 75 575 75 HOH HOH . C 3 HOH A 76 576 76 HOH HOH . C 3 HOH A 77 577 77 HOH HOH . C 3 HOH A 78 578 78 HOH HOH . C 3 HOH A 79 579 79 HOH HOH . C 3 HOH A 80 580 80 HOH HOH . C 3 HOH A 81 581 81 HOH HOH . C 3 HOH A 82 582 82 HOH HOH . C 3 HOH A 83 583 83 HOH HOH . C 3 HOH A 84 584 84 HOH HOH . C 3 HOH A 85 585 85 HOH HOH . C 3 HOH A 86 586 86 HOH HOH . C 3 HOH A 87 587 87 HOH HOH . C 3 HOH A 88 588 88 HOH HOH . C 3 HOH A 89 589 89 HOH HOH . C 3 HOH A 90 590 90 HOH HOH . C 3 HOH A 91 591 91 HOH HOH . C 3 HOH A 92 592 92 HOH HOH . C 3 HOH A 93 593 93 HOH HOH . C 3 HOH A 94 594 94 HOH HOH . C 3 HOH A 95 595 95 HOH HOH . C 3 HOH A 96 596 96 HOH HOH . C 3 HOH A 97 597 97 HOH HOH . C 3 HOH A 98 598 98 HOH HOH . C 3 HOH A 99 599 99 HOH HOH . C 3 HOH A 100 600 100 HOH HOH . C 3 HOH A 101 601 101 HOH HOH . C 3 HOH A 102 602 102 HOH HOH . C 3 HOH A 103 603 103 HOH HOH . C 3 HOH A 104 604 104 HOH HOH . C 3 HOH A 105 605 105 HOH HOH . C 3 HOH A 106 606 106 HOH HOH . C 3 HOH A 107 607 107 HOH HOH . C 3 HOH A 108 608 108 HOH HOH . C 3 HOH A 109 609 109 HOH HOH . C 3 HOH A 110 610 110 HOH HOH . C 3 HOH A 111 611 111 HOH HOH . C 3 HOH A 112 612 112 HOH HOH . C 3 HOH A 113 613 113 HOH HOH . C 3 HOH A 114 614 114 HOH HOH . C 3 HOH A 115 615 115 HOH HOH . C 3 HOH A 116 616 116 HOH HOH . C 3 HOH A 117 617 117 HOH HOH . C 3 HOH A 118 618 118 HOH HOH . C 3 HOH A 119 619 119 HOH HOH . C 3 HOH A 120 620 120 HOH HOH . C 3 HOH A 121 621 121 HOH HOH . C 3 HOH A 122 622 122 HOH HOH . C 3 HOH A 123 623 123 HOH HOH . C 3 HOH A 124 624 124 HOH HOH . C 3 HOH A 125 625 125 HOH HOH . C 3 HOH A 126 626 126 HOH HOH . C 3 HOH A 127 627 127 HOH HOH . C 3 HOH A 128 628 128 HOH HOH . C 3 HOH A 129 629 129 HOH HOH . C 3 HOH A 130 630 130 HOH HOH . C 3 HOH A 131 631 131 HOH HOH . C 3 HOH A 132 632 132 HOH HOH . C 3 HOH A 133 633 133 HOH HOH . C 3 HOH A 134 634 134 HOH HOH . C 3 HOH A 135 635 135 HOH HOH . C 3 HOH A 136 636 136 HOH HOH . C 3 HOH A 137 637 137 HOH HOH . C 3 HOH A 138 638 138 HOH HOH . C 3 HOH A 139 639 139 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . B 2 -41.796 -3.645 92.245 1 62.47 ? PA NDP 500 A 1 HETATM 2 O O1A NDP . . . B 2 -40.59 -4.256 91.785 1 64.23 ? O1A NDP 500 A 1 HETATM 3 O O2A NDP . . . B 2 -43.058 -4.222 91.662 1 63.52 ? O2A NDP 500 A 1 HETATM 4 O O5B NDP . . . B 2 -41.899 -3.668 93.887 1 62.3 ? O5B NDP 500 A 1 HETATM 5 C C5B NDP . . . B 2 -42.994 -4.289 94.561 1 61.14 ? C5B NDP 500 A 1 HETATM 6 C C4B NDP . . . B 2 -42.559 -4.439 96.012 1 61.5 ? C4B NDP 500 A 1 HETATM 7 O O4B NDP . . . B 2 -42.25 -5.836 96.196 1 60.14 ? O4B NDP 500 A 1 HETATM 8 C C3B NDP . . . B 2 -41.39 -3.624 96.491 1 61.91 ? C3B NDP 500 A 1 HETATM 9 O O3B NDP . . . B 2 -41.863 -2.589 97.383 1 60.98 ? O3B NDP 500 A 1 HETATM 10 C C2B NDP . . . B 2 -40.479 -4.584 97.221 1 62.98 ? C2B NDP 500 A 1 HETATM 11 O O2B NDP . . . B 2 -40.38 -4.463 98.664 1 68.69 ? O2B NDP 500 A 1 HETATM 12 C C1B NDP . . . B 2 -40.99 -5.928 96.791 1 59.87 ? C1B NDP 500 A 1 HETATM 13 N N9A NDP . . . B 2 -40.056 -6.722 95.924 1 56.25 ? N9A NDP 500 A 1 HETATM 14 C C8A NDP . . . B 2 -39.724 -6.563 94.555 1 55.16 ? C8A NDP 500 A 1 HETATM 15 N N7A NDP . . . B 2 -38.853 -7.492 94.175 1 53.22 ? N7A NDP 500 A 1 HETATM 16 C C5A NDP . . . B 2 -38.606 -8.263 95.277 1 53.95 ? C5A NDP 500 A 1 HETATM 17 C C6A NDP . . . B 2 -37.787 -9.394 95.545 1 53.62 ? C6A NDP 500 A 1 HETATM 18 N N6A NDP . . . B 2 -37.037 -9.924 94.586 1 53.79 ? N6A NDP 500 A 1 HETATM 19 N N1A NDP . . . B 2 -37.774 -9.93 96.793 1 53.06 ? N1A NDP 500 A 1 HETATM 20 C C2A NDP . . . B 2 -38.534 -9.395 97.77 1 52.83 ? C2A NDP 500 A 1 HETATM 21 N N3A NDP . . . B 2 -39.336 -8.339 97.624 1 53.67 ? N3A NDP 500 A 1 HETATM 22 C C4A NDP . . . B 2 -39.327 -7.809 96.342 1 54.56 ? C4A NDP 500 A 1 HETATM 23 O O3 NDP . . . B 2 -41.995 -2.166 91.861 1 64.14 ? O3 NDP 500 A 1 HETATM 24 P PN NDP . . . B 2 -41.767 -0.724 92.448 1 65.81 ? PN NDP 500 A 1 HETATM 25 O O1N NDP . . . B 2 -40.322 -0.642 92.704 1 65.83 ? O1N NDP 500 A 1 HETATM 26 O O2N NDP . . . B 2 -42.759 -0.608 93.575 1 65.45 ? O2N NDP 500 A 1 HETATM 27 O O5D NDP . . . B 2 -42.34 0.046 91.158 1 66.37 ? O5D NDP 500 A 1 HETATM 28 C C5D NDP . . . B 2 -43.775 0.027 90.821 1 66.38 ? C5D NDP 500 A 1 HETATM 29 C C4D NDP . . . B 2 -43.973 0.799 89.481 1 66.69 ? C4D NDP 500 A 1 HETATM 30 O O4D NDP . . . B 2 -42.765 1.513 89.192 1 65.51 ? O4D NDP 500 A 1 HETATM 31 C C3D NDP . . . B 2 -44.159 -0.192 88.329 1 66.25 ? C3D NDP 500 A 1 HETATM 32 O O3D NDP . . . B 2 -45.179 0.267 87.448 1 66.2 ? O3D NDP 500 A 1 HETATM 33 C C2D NDP . . . B 2 -42.796 -0.303 87.7 1 66.08 ? C2D NDP 500 A 1 HETATM 34 O O2D NDP . . . B 2 -42.921 -0.742 86.356 1 66.48 ? O2D NDP 500 A 1 HETATM 35 C C1D NDP . . . B 2 -42.313 1.188 87.876 1 64.88 ? C1D NDP 500 A 1 HETATM 36 N N1N NDP . . . B 2 -40.82 1.287 87.784 1 62.94 ? N1N NDP 500 A 1 HETATM 37 C C2N NDP . . . B 2 -40.064 1.147 88.98 1 61.35 ? C2N NDP 500 A 1 HETATM 38 C C3N NDP . . . B 2 -38.621 1.256 88.859 1 59.94 ? C3N NDP 500 A 1 HETATM 39 C C7N NDP . . . B 2 -37.771 1.136 90.063 1 59.17 ? C7N NDP 500 A 1 HETATM 40 O O7N NDP . . . B 2 -36.704 1.775 90.218 1 55.87 ? O7N NDP 500 A 1 HETATM 41 N N7N NDP . . . B 2 -38.137 0.318 91.078 1 57.47 ? N7N NDP 500 A 1 HETATM 42 C C4N NDP . . . B 2 -38.072 1.485 87.588 1 60.74 ? C4N NDP 500 A 1 HETATM 43 C C5N NDP . . . B 2 -38.828 1.614 86.449 1 61.41 ? C5N NDP 500 A 1 HETATM 44 C C6N NDP . . . B 2 -40.202 1.517 86.547 1 62.25 ? C6N NDP 500 A 1 HETATM 45 P P2B NDP . . . B 2 -39.894 -3.232 99.468 1 72.84 ? P2B NDP 500 A 1 HETATM 46 O O1X NDP . . . B 2 -38.932 -3.481 100.535 1 71.37 ? O1X NDP 500 A 1 HETATM 47 O O2X NDP . . . B 2 -40.738 -1.987 99.445 1 71.79 ? O2X NDP 500 A 1 HETATM 48 O O3X NDP . . . B 2 -40.944 -3.718 100.485 1 72.12 ? O3X NDP 500 A 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 48 #