data_1GJ4 # _model_server_result.job_id gvoan6F83z8vCxhYmPd0cA _model_server_result.datetime_utc '2024-11-07 23:41:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1gj4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":409}' # _entry.id 1GJ4 # _exptl.entry_id 1GJ4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.97 _cell.angle_gamma 90 _cell.entry_id 1GJ4 _cell.length_a 71.37 _cell.length_b 72.09 _cell.length_c 72.84 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1GJ4 _symmetry.cell_setting monoclinic _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 L CYS 1 1_555 B SG CYS 119 H CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? disulf ? disulf2 B SG CYS 28 H CYS 42 1_555 B SG CYS 44 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? disulf ? disulf3 B SG CYS 173 H CYS 168 1_555 B SG CYS 187 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? disulf ? disulf4 B SG CYS 201 H CYS 191 1_555 B SG CYS 231 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? covale ? covale1 C C GLU 8 I GLU 62 1_555 C N TYS 9 I TYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.309 ? covale ? covale2 C C TYS 9 I TYS 63 1_555 C N LEU 10 I LEU 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.303 ? metalc ? metalc1 B O ARG 233 H ARG 221 1_555 D NA NA . H NA 409 1_555 A ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc2 B O LYS 236 H LYS 224 1_555 D NA NA . H NA 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc3 D NA NA . H NA 409 1_555 G O HOH . H HOH 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.645 ? metalc ? metalc4 D NA NA . H NA 409 1_555 G O HOH . H HOH 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? metalc ? metalc5 D NA NA . H NA 409 1_555 G O HOH . H HOH 456 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? metalc ? metalc6 D NA NA . H NA 409 1_555 G O HOH . H HOH 458 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1GJ4 _atom_sites.fract_transf_matrix[1][1] 0.014011 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002716 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013872 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013984 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NA H 1 409 409 NA NA . E 5 132 H 1 410 246 132 132 . F 6 HOH L 1 439 439 HOH HOH . F 6 HOH L 2 449 449 HOH HOH . F 6 HOH L 3 465 465 HOH HOH . F 6 HOH L 4 470 470 HOH HOH . F 6 HOH L 5 474 474 HOH HOH . F 6 HOH L 6 485 485 HOH HOH . F 6 HOH L 7 488 488 HOH HOH . F 6 HOH L 8 511 511 HOH HOH . F 6 HOH L 9 534 534 HOH HOH . F 6 HOH L 10 539 539 HOH HOH . F 6 HOH L 11 540 540 HOH HOH . F 6 HOH L 12 560 560 HOH HOH . F 6 HOH L 13 575 575 HOH HOH . F 6 HOH L 14 599 599 HOH HOH . F 6 HOH L 15 672 672 HOH HOH . F 6 HOH L 16 687 687 HOH HOH . F 6 HOH L 17 697 697 HOH HOH . F 6 HOH L 18 728 728 HOH HOH . F 6 HOH L 19 729 729 HOH HOH . F 6 HOH L 20 739 739 HOH HOH . F 6 HOH L 21 741 741 HOH HOH . F 6 HOH L 22 743 743 HOH HOH . F 6 HOH L 23 744 744 HOH HOH . F 6 HOH L 24 745 745 HOH HOH . F 6 HOH L 25 747 747 HOH HOH . F 6 HOH L 26 879 879 HOH HOH . G 6 HOH H 1 411 389 HOH HOH . G 6 HOH H 2 412 391 HOH HOH . G 6 HOH H 3 413 395 HOH HOH . G 6 HOH H 4 414 396 HOH HOH . G 6 HOH H 5 415 397 HOH HOH . G 6 HOH H 6 416 401 HOH HOH . G 6 HOH H 7 417 402 HOH HOH . G 6 HOH H 8 418 403 HOH HOH . G 6 HOH H 9 419 404 HOH HOH . G 6 HOH H 10 420 405 HOH HOH . G 6 HOH H 11 421 406 HOH HOH . G 6 HOH H 12 422 407 HOH HOH . G 6 HOH H 13 423 408 HOH HOH . G 6 HOH H 14 424 410 HOH HOH . G 6 HOH H 15 425 411 HOH HOH . G 6 HOH H 16 426 412 HOH HOH . G 6 HOH H 17 427 413 HOH HOH . G 6 HOH H 18 428 414 HOH HOH . G 6 HOH H 19 429 415 HOH HOH . G 6 HOH H 20 430 416 HOH HOH . G 6 HOH H 21 431 417 HOH HOH . G 6 HOH H 22 432 418 HOH HOH . G 6 HOH H 23 433 419 HOH HOH . G 6 HOH H 24 434 420 HOH HOH . G 6 HOH H 25 435 421 HOH HOH . G 6 HOH H 26 436 422 HOH HOH . G 6 HOH H 27 437 423 HOH HOH . G 6 HOH H 28 438 424 HOH HOH . G 6 HOH H 29 439 425 HOH HOH . G 6 HOH H 30 440 426 HOH HOH . G 6 HOH H 31 441 427 HOH HOH . G 6 HOH H 32 442 428 HOH HOH . G 6 HOH H 33 443 430 HOH HOH . G 6 HOH H 34 444 431 HOH HOH . G 6 HOH H 35 445 432 HOH HOH . G 6 HOH H 36 446 433 HOH HOH . G 6 HOH H 37 447 435 HOH HOH . G 6 HOH H 38 448 436 HOH HOH . G 6 HOH H 39 449 437 HOH HOH . G 6 HOH H 40 450 438 HOH HOH . G 6 HOH H 41 451 440 HOH HOH . G 6 HOH H 42 452 441 HOH HOH . G 6 HOH H 43 453 442 HOH HOH . G 6 HOH H 44 454 443 HOH HOH . G 6 HOH H 45 455 444 HOH HOH . G 6 HOH H 46 456 445 HOH HOH . G 6 HOH H 47 457 446 HOH HOH . G 6 HOH H 48 458 447 HOH HOH . G 6 HOH H 49 459 450 HOH HOH . G 6 HOH H 50 460 451 HOH HOH . G 6 HOH H 51 461 452 HOH HOH . G 6 HOH H 52 462 454 HOH HOH . G 6 HOH H 53 463 455 HOH HOH . G 6 HOH H 54 464 456 HOH HOH . G 6 HOH H 55 465 457 HOH HOH . G 6 HOH H 56 466 458 HOH HOH . G 6 HOH H 57 467 459 HOH HOH . G 6 HOH H 58 468 460 HOH HOH . G 6 HOH H 59 469 461 HOH HOH . G 6 HOH H 60 470 467 HOH HOH . G 6 HOH H 61 471 469 HOH HOH . G 6 HOH H 62 472 471 HOH HOH . G 6 HOH H 63 473 473 HOH HOH . G 6 HOH H 64 474 476 HOH HOH . G 6 HOH H 65 475 477 HOH HOH . G 6 HOH H 66 476 479 HOH HOH . G 6 HOH H 67 477 481 HOH HOH . G 6 HOH H 68 478 482 HOH HOH . G 6 HOH H 69 479 483 HOH HOH . G 6 HOH H 70 480 484 HOH HOH . G 6 HOH H 71 481 486 HOH HOH . G 6 HOH H 72 482 487 HOH HOH . G 6 HOH H 73 483 489 HOH HOH . G 6 HOH H 74 484 490 HOH HOH . G 6 HOH H 75 485 491 HOH HOH . G 6 HOH H 76 486 492 HOH HOH . G 6 HOH H 77 487 493 HOH HOH . G 6 HOH H 78 488 495 HOH HOH . G 6 HOH H 79 489 496 HOH HOH . G 6 HOH H 80 490 498 HOH HOH . G 6 HOH H 81 491 500 HOH HOH . G 6 HOH H 82 492 501 HOH HOH . G 6 HOH H 83 493 502 HOH HOH . G 6 HOH H 84 494 503 HOH HOH . G 6 HOH H 85 495 504 HOH HOH . G 6 HOH H 86 496 505 HOH HOH . G 6 HOH H 87 497 506 HOH HOH . G 6 HOH H 88 498 507 HOH HOH . G 6 HOH H 89 499 508 HOH HOH . G 6 HOH H 90 500 509 HOH HOH . G 6 HOH H 91 501 510 HOH HOH . G 6 HOH H 92 502 512 HOH HOH . G 6 HOH H 93 503 513 HOH HOH . G 6 HOH H 94 504 516 HOH HOH . G 6 HOH H 95 505 517 HOH HOH . G 6 HOH H 96 506 518 HOH HOH . G 6 HOH H 97 507 519 HOH HOH . G 6 HOH H 98 508 521 HOH HOH . G 6 HOH H 99 509 524 HOH HOH . G 6 HOH H 100 510 525 HOH HOH . G 6 HOH H 101 511 526 HOH HOH . G 6 HOH H 102 512 527 HOH HOH . G 6 HOH H 103 513 528 HOH HOH . G 6 HOH H 104 514 530 HOH HOH . G 6 HOH H 105 515 532 HOH HOH . G 6 HOH H 106 516 535 HOH HOH . G 6 HOH H 107 517 541 HOH HOH . G 6 HOH H 108 518 542 HOH HOH . G 6 HOH H 109 519 543 HOH HOH . G 6 HOH H 110 520 544 HOH HOH . G 6 HOH H 111 521 547 HOH HOH . G 6 HOH H 112 522 548 HOH HOH . G 6 HOH H 113 523 549 HOH HOH . G 6 HOH H 114 524 550 HOH HOH . G 6 HOH H 115 525 551 HOH HOH . G 6 HOH H 116 526 552 HOH HOH . G 6 HOH H 117 527 553 HOH HOH . G 6 HOH H 118 528 557 HOH HOH . G 6 HOH H 119 529 558 HOH HOH . G 6 HOH H 120 530 559 HOH HOH . G 6 HOH H 121 531 565 HOH HOH . G 6 HOH H 122 532 566 HOH HOH . G 6 HOH H 123 533 567 HOH HOH . G 6 HOH H 124 534 568 HOH HOH . G 6 HOH H 125 535 569 HOH HOH . G 6 HOH H 126 536 570 HOH HOH . G 6 HOH H 127 537 571 HOH HOH . G 6 HOH H 128 538 572 HOH HOH . G 6 HOH H 129 539 573 HOH HOH . G 6 HOH H 130 540 574 HOH HOH . G 6 HOH H 131 541 576 HOH HOH . G 6 HOH H 132 542 578 HOH HOH . G 6 HOH H 133 543 579 HOH HOH . G 6 HOH H 134 544 583 HOH HOH . G 6 HOH H 135 545 584 HOH HOH . G 6 HOH H 136 546 586 HOH HOH . G 6 HOH H 137 547 601 HOH HOH . G 6 HOH H 138 548 614 HOH HOH . G 6 HOH H 139 549 620 HOH HOH . G 6 HOH H 140 550 624 HOH HOH . G 6 HOH H 141 551 626 HOH HOH . G 6 HOH H 142 552 652 HOH HOH . G 6 HOH H 143 553 665 HOH HOH . G 6 HOH H 144 554 667 HOH HOH . G 6 HOH H 145 555 673 HOH HOH . G 6 HOH H 146 556 683 HOH HOH . G 6 HOH H 147 557 689 HOH HOH . G 6 HOH H 148 558 690 HOH HOH . G 6 HOH H 149 559 698 HOH HOH . G 6 HOH H 150 560 706 HOH HOH . G 6 HOH H 151 561 707 HOH HOH . G 6 HOH H 152 562 708 HOH HOH . G 6 HOH H 153 563 709 HOH HOH . G 6 HOH H 154 564 710 HOH HOH . G 6 HOH H 155 565 711 HOH HOH . G 6 HOH H 156 566 712 HOH HOH . G 6 HOH H 157 567 713 HOH HOH . G 6 HOH H 158 568 714 HOH HOH . G 6 HOH H 159 569 715 HOH HOH . G 6 HOH H 160 570 716 HOH HOH . G 6 HOH H 161 571 717 HOH HOH . G 6 HOH H 162 572 718 HOH HOH . G 6 HOH H 163 573 719 HOH HOH . G 6 HOH H 164 574 720 HOH HOH . G 6 HOH H 165 575 721 HOH HOH . G 6 HOH H 166 576 722 HOH HOH . G 6 HOH H 167 577 725 HOH HOH . G 6 HOH H 168 578 726 HOH HOH . G 6 HOH H 169 579 727 HOH HOH . G 6 HOH H 170 580 730 HOH HOH . G 6 HOH H 171 581 731 HOH HOH . G 6 HOH H 172 582 732 HOH HOH . G 6 HOH H 173 583 733 HOH HOH . G 6 HOH H 174 584 734 HOH HOH . G 6 HOH H 175 585 746 HOH HOH . G 6 HOH H 176 586 749 HOH HOH . G 6 HOH H 177 587 752 HOH HOH . G 6 HOH H 178 588 753 HOH HOH . G 6 HOH H 179 589 754 HOH HOH . G 6 HOH H 180 590 755 HOH HOH . G 6 HOH H 181 591 756 HOH HOH . G 6 HOH H 182 592 757 HOH HOH . G 6 HOH H 183 593 759 HOH HOH . G 6 HOH H 184 594 760 HOH HOH . G 6 HOH H 185 595 766 HOH HOH . G 6 HOH H 186 596 769 HOH HOH . G 6 HOH H 187 597 771 HOH HOH . G 6 HOH H 188 598 772 HOH HOH . G 6 HOH H 189 599 784 HOH HOH . G 6 HOH H 190 600 785 HOH HOH . G 6 HOH H 191 601 787 HOH HOH . G 6 HOH H 192 602 794 HOH HOH . G 6 HOH H 193 603 796 HOH HOH . G 6 HOH H 194 604 799 HOH HOH . G 6 HOH H 195 605 800 HOH HOH . G 6 HOH H 196 606 802 HOH HOH . G 6 HOH H 197 607 804 HOH HOH . G 6 HOH H 198 608 805 HOH HOH . G 6 HOH H 199 609 806 HOH HOH . G 6 HOH H 200 610 809 HOH HOH . G 6 HOH H 201 611 816 HOH HOH . G 6 HOH H 202 612 817 HOH HOH . G 6 HOH H 203 613 821 HOH HOH . G 6 HOH H 204 614 829 HOH HOH . G 6 HOH H 205 615 832 HOH HOH . G 6 HOH H 206 616 844 HOH HOH . G 6 HOH H 207 617 845 HOH HOH . G 6 HOH H 208 618 853 HOH HOH . G 6 HOH H 209 619 856 HOH HOH . G 6 HOH H 210 620 858 HOH HOH . G 6 HOH H 211 621 863 HOH HOH . G 6 HOH H 212 622 864 HOH HOH . G 6 HOH H 213 623 866 HOH HOH . G 6 HOH H 214 624 877 HOH HOH . G 6 HOH H 215 625 880 HOH HOH . G 6 HOH H 216 626 890 HOH HOH . G 6 HOH H 217 627 897 HOH HOH . G 6 HOH H 218 628 900 HOH HOH . G 6 HOH H 219 629 902 HOH HOH . G 6 HOH H 220 630 920 HOH HOH . G 6 HOH H 221 631 922 HOH HOH . G 6 HOH H 222 632 928 HOH HOH . G 6 HOH H 223 633 931 HOH HOH . H 6 HOH I 1 475 475 HOH HOH . H 6 HOH I 2 497 497 HOH HOH . H 6 HOH I 3 499 499 HOH HOH . H 6 HOH I 4 520 520 HOH HOH . H 6 HOH I 5 554 554 HOH HOH . H 6 HOH I 6 585 585 HOH HOH . H 6 HOH I 7 587 587 HOH HOH . H 6 HOH I 8 588 588 HOH HOH . H 6 HOH I 9 589 589 HOH HOH . H 6 HOH I 10 597 597 HOH HOH . H 6 HOH I 11 602 602 HOH HOH . H 6 HOH I 12 603 603 HOH HOH . H 6 HOH I 13 615 615 HOH HOH . H 6 HOH I 14 737 737 HOH HOH . H 6 HOH I 15 740 740 HOH HOH . H 6 HOH I 16 774 774 HOH HOH . H 6 HOH I 17 791 791 HOH HOH . H 6 HOH I 18 842 842 HOH HOH . H 6 HOH I 19 888 888 HOH HOH . H 6 HOH I 20 926 926 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 5.681 _atom_site.Cartn_y -14.067 _atom_site.Cartn_z 30.851 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 35.51 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 409 _atom_site.auth_asym_id H _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #