data_1GJ8 # _model_server_result.job_id Bj0lMSACA--RborE_sdDnQ _model_server_result.datetime_utc '2024-11-07 21:43:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1gj8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1}' # _entry.id 1GJ8 # _exptl.entry_id 1GJ8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.76 _cell.angle_gamma 90 _cell.entry_id 1GJ8 _cell.length_a 81.77 _cell.length_b 50.02 _cell.length_c 66.94 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1GJ8 _symmetry.cell_setting monoclinic _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 13 A CYS 13 1_555 B SG CYS 121 B CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 B SG CYS 31 B CYS 42 1_555 B SG CYS 47 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf3 B SG CYS 39 B CYS 50 1_555 B SG CYS 110 B CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf4 B SG CYS 135 B CYS 136 1_555 B SG CYS 204 B CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf5 B SG CYS 167 B CYS 168 1_555 B SG CYS 183 B CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? disulf ? disulf6 B SG CYS 194 B CYS 191 1_555 B SG CYS 222 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 116 n n C1 O2 CIT sing 117 n n C1 C2 CIT sing 118 n n O2 HO2 CIT sing 119 n n C2 C3 CIT sing 120 n n C2 H21 CIT sing 121 n n C2 H22 CIT sing 122 n n C3 O7 CIT sing 123 n n C3 C4 CIT sing 124 n n C3 C6 CIT sing 125 n n O7 HO7 CIT sing 126 n n C4 C5 CIT sing 127 n n C4 H41 CIT sing 128 n n C4 H42 CIT sing 129 n n C5 O3 CIT doub 130 n n C5 O4 CIT sing 131 n n O4 HO4 CIT sing 132 n n C6 O5 CIT doub 133 n n C6 O6 CIT sing 134 n n O6 HO6 CIT sing 135 n n # _atom_sites.entry_id 1GJ8 _atom_sites.fract_transf_matrix[1][1] 0.012229 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005384 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019992 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016322 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CIT B 1 1 1 CIT CIT . D 3 CIT B 1 2 2 CIT CIT . E 4 133 B 1 251 246 133 133 . F 5 HOH A 1 129 129 HOH HOH . F 5 HOH A 2 131 131 HOH HOH . F 5 HOH A 3 467 467 HOH HOH . F 5 HOH A 4 625 625 HOH HOH . F 5 HOH A 5 1072 1072 HOH HOH . F 5 HOH A 6 1080 1080 HOH HOH . F 5 HOH A 7 1093 1093 HOH HOH . F 5 HOH A 8 1101 1101 HOH HOH . G 5 HOH B 1 252 5 HOH HOH . G 5 HOH B 2 253 7 HOH HOH . G 5 HOH B 3 254 9 HOH HOH . G 5 HOH B 4 255 10 HOH HOH . G 5 HOH B 5 256 22 HOH HOH . G 5 HOH B 6 257 24 HOH HOH . G 5 HOH B 7 258 27 HOH HOH . G 5 HOH B 8 259 29 HOH HOH . G 5 HOH B 9 260 30 HOH HOH . G 5 HOH B 10 261 35 HOH HOH . G 5 HOH B 11 262 36 HOH HOH . G 5 HOH B 12 263 37 HOH HOH . G 5 HOH B 13 264 38 HOH HOH . G 5 HOH B 14 265 40 HOH HOH . G 5 HOH B 15 266 41 HOH HOH . G 5 HOH B 16 267 42 HOH HOH . G 5 HOH B 17 268 45 HOH HOH . G 5 HOH B 18 269 46 HOH HOH . G 5 HOH B 19 270 53 HOH HOH . G 5 HOH B 20 271 54 HOH HOH . G 5 HOH B 21 272 56 HOH HOH . G 5 HOH B 22 273 58 HOH HOH . G 5 HOH B 23 274 59 HOH HOH . G 5 HOH B 24 275 60 HOH HOH . G 5 HOH B 25 276 61 HOH HOH . G 5 HOH B 26 277 73 HOH HOH . G 5 HOH B 27 278 77 HOH HOH . G 5 HOH B 28 279 78 HOH HOH . G 5 HOH B 29 280 97 HOH HOH . G 5 HOH B 30 281 99 HOH HOH . G 5 HOH B 31 282 100 HOH HOH . G 5 HOH B 32 283 101 HOH HOH . G 5 HOH B 33 284 102 HOH HOH . G 5 HOH B 34 285 126 HOH HOH . G 5 HOH B 35 286 127 HOH HOH . G 5 HOH B 36 287 130 HOH HOH . G 5 HOH B 37 288 132 HOH HOH . G 5 HOH B 38 289 133 HOH HOH . G 5 HOH B 39 290 134 HOH HOH . G 5 HOH B 40 291 136 HOH HOH . G 5 HOH B 41 292 140 HOH HOH . G 5 HOH B 42 293 150 HOH HOH . G 5 HOH B 43 294 172 HOH HOH . G 5 HOH B 44 295 207 HOH HOH . G 5 HOH B 45 296 281 HOH HOH . G 5 HOH B 46 297 295 HOH HOH . G 5 HOH B 47 298 296 HOH HOH . G 5 HOH B 48 299 297 HOH HOH . G 5 HOH B 49 300 298 HOH HOH . G 5 HOH B 50 301 299 HOH HOH . G 5 HOH B 51 302 300 HOH HOH . G 5 HOH B 52 303 301 HOH HOH . G 5 HOH B 53 304 302 HOH HOH . G 5 HOH B 54 305 315 HOH HOH . G 5 HOH B 55 306 316 HOH HOH . G 5 HOH B 56 307 317 HOH HOH . G 5 HOH B 57 308 318 HOH HOH . G 5 HOH B 58 309 319 HOH HOH . G 5 HOH B 59 310 320 HOH HOH . G 5 HOH B 60 311 321 HOH HOH . G 5 HOH B 61 312 329 HOH HOH . G 5 HOH B 62 313 330 HOH HOH . G 5 HOH B 63 314 331 HOH HOH . G 5 HOH B 64 315 332 HOH HOH . G 5 HOH B 65 316 333 HOH HOH . G 5 HOH B 66 317 334 HOH HOH . G 5 HOH B 67 318 343 HOH HOH . G 5 HOH B 68 319 355 HOH HOH . G 5 HOH B 69 320 373 HOH HOH . G 5 HOH B 70 321 377 HOH HOH . G 5 HOH B 71 322 378 HOH HOH . G 5 HOH B 72 323 379 HOH HOH . G 5 HOH B 73 324 380 HOH HOH . G 5 HOH B 74 325 381 HOH HOH . G 5 HOH B 75 326 399 HOH HOH . G 5 HOH B 76 327 430 HOH HOH . G 5 HOH B 77 328 431 HOH HOH . G 5 HOH B 78 329 468 HOH HOH . G 5 HOH B 79 330 471 HOH HOH . G 5 HOH B 80 331 473 HOH HOH . G 5 HOH B 81 332 479 HOH HOH . G 5 HOH B 82 333 480 HOH HOH . G 5 HOH B 83 334 497 HOH HOH . G 5 HOH B 84 335 501 HOH HOH . G 5 HOH B 85 336 515 HOH HOH . G 5 HOH B 86 337 524 HOH HOH . G 5 HOH B 87 338 532 HOH HOH . G 5 HOH B 88 339 550 HOH HOH . G 5 HOH B 89 340 555 HOH HOH . G 5 HOH B 90 341 556 HOH HOH . G 5 HOH B 91 342 572 HOH HOH . G 5 HOH B 92 343 579 HOH HOH . G 5 HOH B 93 344 580 HOH HOH . G 5 HOH B 94 345 589 HOH HOH . G 5 HOH B 95 346 590 HOH HOH . G 5 HOH B 96 347 591 HOH HOH . G 5 HOH B 97 348 592 HOH HOH . G 5 HOH B 98 349 596 HOH HOH . G 5 HOH B 99 350 597 HOH HOH . G 5 HOH B 100 351 599 HOH HOH . G 5 HOH B 101 352 602 HOH HOH . G 5 HOH B 102 353 605 HOH HOH . G 5 HOH B 103 354 606 HOH HOH . G 5 HOH B 104 355 610 HOH HOH . G 5 HOH B 105 356 611 HOH HOH . G 5 HOH B 106 357 612 HOH HOH . G 5 HOH B 107 358 613 HOH HOH . G 5 HOH B 108 359 614 HOH HOH . G 5 HOH B 109 360 615 HOH HOH . G 5 HOH B 110 361 616 HOH HOH . G 5 HOH B 111 362 617 HOH HOH . G 5 HOH B 112 363 618 HOH HOH . G 5 HOH B 113 364 619 HOH HOH . G 5 HOH B 114 365 620 HOH HOH . G 5 HOH B 115 366 624 HOH HOH . G 5 HOH B 116 367 627 HOH HOH . G 5 HOH B 117 368 628 HOH HOH . G 5 HOH B 118 369 635 HOH HOH . G 5 HOH B 119 370 636 HOH HOH . G 5 HOH B 120 371 637 HOH HOH . G 5 HOH B 121 372 639 HOH HOH . G 5 HOH B 122 373 642 HOH HOH . G 5 HOH B 123 374 647 HOH HOH . G 5 HOH B 124 375 651 HOH HOH . G 5 HOH B 125 376 678 HOH HOH . G 5 HOH B 126 377 690 HOH HOH . G 5 HOH B 127 378 691 HOH HOH . G 5 HOH B 128 379 692 HOH HOH . G 5 HOH B 129 380 693 HOH HOH . G 5 HOH B 130 381 694 HOH HOH . G 5 HOH B 131 382 695 HOH HOH . G 5 HOH B 132 383 696 HOH HOH . G 5 HOH B 133 384 698 HOH HOH . G 5 HOH B 134 385 699 HOH HOH . G 5 HOH B 135 386 701 HOH HOH . G 5 HOH B 136 387 702 HOH HOH . G 5 HOH B 137 388 703 HOH HOH . G 5 HOH B 138 389 714 HOH HOH . G 5 HOH B 139 390 718 HOH HOH . G 5 HOH B 140 391 719 HOH HOH . G 5 HOH B 141 392 720 HOH HOH . G 5 HOH B 142 393 754 HOH HOH . G 5 HOH B 143 394 755 HOH HOH . G 5 HOH B 144 395 757 HOH HOH . G 5 HOH B 145 396 758 HOH HOH . G 5 HOH B 146 397 766 HOH HOH . G 5 HOH B 147 398 767 HOH HOH . G 5 HOH B 148 399 776 HOH HOH . G 5 HOH B 149 400 777 HOH HOH . G 5 HOH B 150 401 778 HOH HOH . G 5 HOH B 151 402 780 HOH HOH . G 5 HOH B 152 403 781 HOH HOH . G 5 HOH B 153 404 782 HOH HOH . G 5 HOH B 154 405 806 HOH HOH . G 5 HOH B 155 406 838 HOH HOH . G 5 HOH B 156 407 843 HOH HOH . G 5 HOH B 157 408 844 HOH HOH . G 5 HOH B 158 409 845 HOH HOH . G 5 HOH B 159 410 846 HOH HOH . G 5 HOH B 160 411 887 HOH HOH . G 5 HOH B 161 412 888 HOH HOH . G 5 HOH B 162 413 889 HOH HOH . G 5 HOH B 163 414 890 HOH HOH . G 5 HOH B 164 415 922 HOH HOH . G 5 HOH B 165 416 949 HOH HOH . G 5 HOH B 166 417 950 HOH HOH . G 5 HOH B 167 418 951 HOH HOH . G 5 HOH B 168 419 952 HOH HOH . G 5 HOH B 169 420 953 HOH HOH . G 5 HOH B 170 421 954 HOH HOH . G 5 HOH B 171 422 955 HOH HOH . G 5 HOH B 172 423 956 HOH HOH . G 5 HOH B 173 424 957 HOH HOH . G 5 HOH B 174 425 975 HOH HOH . G 5 HOH B 175 426 976 HOH HOH . G 5 HOH B 176 427 979 HOH HOH . G 5 HOH B 177 428 1026 HOH HOH . G 5 HOH B 178 429 1034 HOH HOH . G 5 HOH B 179 430 1043 HOH HOH . G 5 HOH B 180 431 1045 HOH HOH . G 5 HOH B 181 432 1051 HOH HOH . G 5 HOH B 182 433 1055 HOH HOH . G 5 HOH B 183 434 1056 HOH HOH . G 5 HOH B 184 435 1066 HOH HOH . G 5 HOH B 185 436 1067 HOH HOH . G 5 HOH B 186 437 1068 HOH HOH . G 5 HOH B 187 438 1069 HOH HOH . G 5 HOH B 188 439 1070 HOH HOH . G 5 HOH B 189 440 1071 HOH HOH . G 5 HOH B 190 441 1073 HOH HOH . G 5 HOH B 191 442 1078 HOH HOH . G 5 HOH B 192 443 1079 HOH HOH . G 5 HOH B 193 444 1081 HOH HOH . G 5 HOH B 194 445 1083 HOH HOH . G 5 HOH B 195 446 1084 HOH HOH . G 5 HOH B 196 447 1085 HOH HOH . G 5 HOH B 197 448 1087 HOH HOH . G 5 HOH B 198 449 1088 HOH HOH . G 5 HOH B 199 450 1089 HOH HOH . G 5 HOH B 200 451 1090 HOH HOH . G 5 HOH B 201 452 1091 HOH HOH . G 5 HOH B 202 453 1092 HOH HOH . G 5 HOH B 203 454 1095 HOH HOH . G 5 HOH B 204 455 1096 HOH HOH . G 5 HOH B 205 456 1097 HOH HOH . G 5 HOH B 206 457 1100 HOH HOH . G 5 HOH B 207 458 1102 HOH HOH . G 5 HOH B 208 459 1105 HOH HOH . G 5 HOH B 209 460 1107 HOH HOH . G 5 HOH B 210 461 1108 HOH HOH . G 5 HOH B 211 462 1109 HOH HOH . G 5 HOH B 212 463 1110 HOH HOH . G 5 HOH B 213 464 1112 HOH HOH . G 5 HOH B 214 465 1114 HOH HOH . G 5 HOH B 215 466 1117 HOH HOH . G 5 HOH B 216 467 1118 HOH HOH . G 5 HOH B 217 468 1123 HOH HOH . G 5 HOH B 218 469 1125 HOH HOH . G 5 HOH B 219 470 1126 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . C 3 34.044 9.916 14.926 1 29.91 ? C1 CIT 1 B 1 HETATM 2 O O1 CIT . . . C 3 33.448 10.859 14.452 1 29.96 ? O1 CIT 1 B 1 HETATM 3 O O2 CIT . . . C 3 33.515 8.863 15.277 1 27.49 ? O2 CIT 1 B 1 HETATM 4 C C2 CIT . . . C 3 35.593 10.022 15.112 1 26.22 ? C2 CIT 1 B 1 HETATM 5 C C3 CIT . . . C 3 36.32 11.473 15.08 1 20.02 ? C3 CIT 1 B 1 HETATM 6 O O7 CIT . . . C 3 36.227 11.926 13.736 1 18.35 ? O7 CIT 1 B 1 HETATM 7 C C4 CIT . . . C 3 37.838 11.248 15.421 1 22.86 ? C4 CIT 1 B 1 HETATM 8 C C5 CIT . . . C 3 38.753 12.459 15.104 1 22.93 ? C5 CIT 1 B 1 HETATM 9 O O3 CIT . . . C 3 38.658 13.438 15.824 1 23.88 ? O3 CIT 1 B 1 HETATM 10 O O4 CIT . . . C 3 39.518 12.358 14.153 1 29.49 ? O4 CIT 1 B 1 HETATM 11 C C6 CIT . . . C 3 35.71 12.615 15.917 1 16.2 ? C6 CIT 1 B 1 HETATM 12 O O5 CIT . . . C 3 35.499 12.444 17.101 1 15.3 ? O5 CIT 1 B 1 HETATM 13 O O6 CIT . . . C 3 35.482 13.646 15.296 1 16.07 ? O6 CIT 1 B 1 HETATM 14 H H21 CIT . . . C 3 35.85 9.535 16.043 1 25.95 ? H21 CIT 1 B 1 HETATM 15 H H22 CIT . . . C 3 36.039 9.422 14.332 1 25.58 ? H22 CIT 1 B 1 HETATM 16 H HO7 CIT . . . C 3 35.383 12.392 13.847 1 17.44 ? HO7 CIT 1 B 1 HETATM 17 H H41 CIT . . . C 3 37.933 11.026 16.474 1 20.74 ? H41 CIT 1 B 1 HETATM 18 H H42 CIT . . . C 3 38.193 10.386 14.876 1 21.32 ? H42 CIT 1 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 18 #