data_1GKA # _model_server_result.job_id Sh5eypSfFhaPqJmM5TrGVA _model_server_result.datetime_utc '2025-02-26 16:11:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1gka # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1175}' # _entry.id 1GKA # _exptl.entry_id 1GKA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 596.838 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ASTAXANTHIN _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1GKA _cell.length_a 155.466 _cell.length_b 155.466 _cell.length_c 168.504 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1GKA _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 11 A CYS 12 1_555 A SG CYS 120 A CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 50 A CYS 51 1_555 A SG CYS 172 A CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf3 A SG CYS 116 A CYS 117 1_555 A SG CYS 149 A CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? disulf ? disulf4 B SG CYS 12 B CYS 12 1_555 B SG CYS 119 B CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf5 B SG CYS 46 B CYS 46 1_555 B SG CYS 170 B CYS 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? # _chem_comp.formula 'C40 H52 O4' _chem_comp.formula_weight 596.838 _chem_comp.id AXT _chem_comp.mon_nstd_flag . _chem_comp.name ASTAXANTHIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "3,3'-DIHYDROXY-BETA,BETA-CAROTENE-4,4'-DIONE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 AXT sing 70 n n C1 C6 AXT sing 71 n n C1 C16 AXT sing 72 n n C1 C17 AXT sing 73 n n C2 C3 AXT sing 74 n n C2 HC21 AXT sing 75 n n C2 HC22 AXT sing 76 n n C3 C4 AXT sing 77 n n C3 O3 AXT sing 78 n n C3 H3 AXT sing 79 n n C4 C5 AXT sing 80 n n C4 O4 AXT doub 81 n n C5 C6 AXT doub 82 n n C5 C18 AXT sing 83 n n C6 C7 AXT sing 84 n n C7 C8 AXT doub 85 e n C7 H7 AXT sing 86 n n C8 C9 AXT sing 87 n n C8 H8 AXT sing 88 n n C9 C10 AXT doub 89 e n C9 C19 AXT sing 90 n n C10 C11 AXT sing 91 n n C10 H10 AXT sing 92 n n C11 C12 AXT doub 93 e n C11 H11 AXT sing 94 n n C12 C13 AXT sing 95 n n C12 H12 AXT sing 96 n n C13 C14 AXT doub 97 e n C13 C20 AXT sing 98 n n C14 C15 AXT sing 99 n n C14 H14 AXT sing 100 n n C15 C35 AXT doub 101 e n C15 H15 AXT sing 102 n n C16 H161 AXT sing 103 n n C16 H162 AXT sing 104 n n C16 H163 AXT sing 105 n n C17 H171 AXT sing 106 n n C17 H172 AXT sing 107 n n C17 H173 AXT sing 108 n n C18 H181 AXT sing 109 n n C18 H182 AXT sing 110 n n C18 H183 AXT sing 111 n n C19 H191 AXT sing 112 n n C19 H192 AXT sing 113 n n C19 H193 AXT sing 114 n n C20 H201 AXT sing 115 n n C20 H202 AXT sing 116 n n C20 H203 AXT sing 117 n n O3 HA AXT sing 118 n n C21 C22 AXT sing 119 n n C21 C26 AXT sing 120 n n C21 C36 AXT sing 121 n n C21 C37 AXT sing 122 n n C22 C23 AXT sing 123 n n C22 H221 AXT sing 124 n n C22 H222 AXT sing 125 n n C23 C24 AXT sing 126 n n C23 O23 AXT sing 127 n n C23 H23 AXT sing 128 n n C24 C25 AXT sing 129 n n C24 O24 AXT doub 130 n n C25 C26 AXT doub 131 n n C25 C38 AXT sing 132 n n C26 C27 AXT sing 133 n n C27 C28 AXT doub 134 e n C27 H27 AXT sing 135 n n C28 C29 AXT sing 136 n n C28 H28 AXT sing 137 n n C29 C30 AXT doub 138 e n C29 C39 AXT sing 139 n n C30 C31 AXT sing 140 n n C30 H30 AXT sing 141 n n C31 C32 AXT doub 142 e n C31 H31 AXT sing 143 n n C32 C33 AXT sing 144 n n C32 H32 AXT sing 145 n n C33 C34 AXT doub 146 e n C33 C40 AXT sing 147 n n C34 C35 AXT sing 148 n n C34 H34 AXT sing 149 n n C35 H35 AXT sing 150 n n C36 H361 AXT sing 151 n n C36 H362 AXT sing 152 n n C36 H363 AXT sing 153 n n C37 H371 AXT sing 154 n n C37 H372 AXT sing 155 n n C37 H373 AXT sing 156 n n C38 H381 AXT sing 157 n n C38 H382 AXT sing 158 n n C38 H383 AXT sing 159 n n C39 H391 AXT sing 160 n n C39 H392 AXT sing 161 n n C39 H393 AXT sing 162 n n C40 H401 AXT sing 163 n n C40 H402 AXT sing 164 n n C40 H403 AXT sing 165 n n O23 HB AXT sing 166 n n # _atom_sites.entry_id 1GKA _atom_sites.fract_transf_matrix[1][1] 0.006432 _atom_sites.fract_transf_matrix[1][2] 0.003714 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007427 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005934 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 AXT A 1 1182 1182 AXT AXT . D 4 D12 A 1 1183 1183 D12 D12 . E 3 AXT B 1 1175 1175 AXT AXT . F 5 TRS B 1 1176 1176 TRS TRS . G 6 EPE B 1 1177 1177 EPE EPE . H 7 HOH A 1 2001 2001 HOH HOH . H 7 HOH A 2 2002 2002 HOH HOH . H 7 HOH A 3 2003 2003 HOH HOH . H 7 HOH A 4 2004 2004 HOH HOH . H 7 HOH A 5 2005 2005 HOH HOH . H 7 HOH A 6 2006 2006 HOH HOH . H 7 HOH A 7 2007 2007 HOH HOH . H 7 HOH A 8 2008 2008 HOH HOH . H 7 HOH A 9 2009 2009 HOH HOH . H 7 HOH A 10 2010 2010 HOH HOH . H 7 HOH A 11 2011 2011 HOH HOH . I 7 HOH B 1 2001 2001 HOH HOH . I 7 HOH B 2 2002 2002 HOH HOH . I 7 HOH B 3 2003 2003 HOH HOH . I 7 HOH B 4 2004 2004 HOH HOH . I 7 HOH B 5 2005 2005 HOH HOH . I 7 HOH B 6 2006 2006 HOH HOH . I 7 HOH B 7 2007 2007 HOH HOH . I 7 HOH B 8 2008 2008 HOH HOH . I 7 HOH B 9 2009 2009 HOH HOH . I 7 HOH B 10 2010 2010 HOH HOH . I 7 HOH B 11 2011 2011 HOH HOH . I 7 HOH B 12 2012 2012 HOH HOH . I 7 HOH B 13 2013 2013 HOH HOH . I 7 HOH B 14 2014 2014 HOH HOH . I 7 HOH B 15 2015 2015 HOH HOH . I 7 HOH B 16 2016 2016 HOH HOH . I 7 HOH B 17 2017 2017 HOH HOH . I 7 HOH B 18 2018 2018 HOH HOH . I 7 HOH B 19 2019 2019 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 AXT . . . E 3 19.585 76.868 12.855 1 21.67 ? C1 AXT 1175 B 1 HETATM 2 C C2 AXT . . . E 3 18.474 75.911 12.632 1 23.1 ? C2 AXT 1175 B 1 HETATM 3 C C3 AXT . . . E 3 17.16 76.651 12.624 1 25.33 ? C3 AXT 1175 B 1 HETATM 4 C C4 AXT . . . E 3 17.12 77.727 11.592 1 24.66 ? C4 AXT 1175 B 1 HETATM 5 C C5 AXT . . . E 3 18.311 78.312 11.157 1 23.41 ? C5 AXT 1175 B 1 HETATM 6 C C6 AXT . . . E 3 19.573 77.924 11.691 1 22.57 ? C6 AXT 1175 B 1 HETATM 7 C C7 AXT . . . E 3 20.748 78.536 11.07 1 21.2 ? C7 AXT 1175 B 1 HETATM 8 C C8 AXT . . . E 3 22.04 78.226 11.334 1 18.54 ? C8 AXT 1175 B 1 HETATM 9 C C9 AXT . . . E 3 23.138 78.797 10.706 1 18.71 ? C9 AXT 1175 B 1 HETATM 10 C C10 AXT . . . E 3 24.413 78.377 11.199 1 18.24 ? C10 AXT 1175 B 1 HETATM 11 C C11 AXT . . . E 3 25.696 78.831 10.797 1 16.82 ? C11 AXT 1175 B 1 HETATM 12 C C12 AXT . . . E 3 26.777 78.235 11.418 1 15.58 ? C12 AXT 1175 B 1 HETATM 13 C C13 AXT . . . E 3 28.122 78.524 11.176 1 14.91 ? C13 AXT 1175 B 1 HETATM 14 C C14 AXT . . . E 3 29.095 77.776 11.853 1 15.81 ? C14 AXT 1175 B 1 HETATM 15 C C15 AXT . . . E 3 30.478 77.926 11.636 1 15.79 ? C15 AXT 1175 B 1 HETATM 16 C C16 AXT . . . E 3 20.764 76.024 12.881 1 21.22 ? C16 AXT 1175 B 1 HETATM 17 C C17 AXT . . . E 3 19.436 77.557 14.179 1 18.75 ? C17 AXT 1175 B 1 HETATM 18 C C18 AXT . . . E 3 18.234 79.349 10.088 1 22.9 ? C18 AXT 1175 B 1 HETATM 19 C C19 AXT . . . E 3 22.967 79.821 9.609 1 17.22 ? C19 AXT 1175 B 1 HETATM 20 C C20 AXT . . . E 3 28.528 79.556 10.205 1 15.22 ? C20 AXT 1175 B 1 HETATM 21 O O3 AXT . . . E 3 16.194 75.699 12.327 1 29.32 ? O3 AXT 1175 B 1 HETATM 22 O O4 AXT . . . E 3 16.027 78.047 11.12 1 24.5 ? O4 AXT 1175 B 1 HETATM 23 C C21 AXT . . . E 3 42.2 76.536 9.763 1 23.16 ? C21 AXT 1175 B 1 HETATM 24 C C22 AXT . . . E 3 43.397 76.449 8.87 1 24.6 ? C22 AXT 1175 B 1 HETATM 25 C C23 AXT . . . E 3 44.613 76.725 9.639 1 26.25 ? C23 AXT 1175 B 1 HETATM 26 C C24 AXT . . . E 3 44.726 75.603 10.662 1 26.71 ? C24 AXT 1175 B 1 HETATM 27 C C25 AXT . . . E 3 43.523 75.121 11.346 1 26.34 ? C25 AXT 1175 B 1 HETATM 28 C C26 AXT . . . E 3 42.252 75.619 10.966 1 24.94 ? C26 AXT 1175 B 1 HETATM 29 C C27 AXT . . . E 3 41.043 75.236 11.675 1 24.15 ? C27 AXT 1175 B 1 HETATM 30 C C28 AXT . . . E 3 39.799 75.877 11.456 1 23.65 ? C28 AXT 1175 B 1 HETATM 31 C C29 AXT . . . E 3 38.629 75.556 12.166 1 25.18 ? C29 AXT 1175 B 1 HETATM 32 C C30 AXT . . . E 3 37.427 76.212 11.842 1 24.87 ? C30 AXT 1175 B 1 HETATM 33 C C31 AXT . . . E 3 36.183 75.956 12.486 1 22.68 ? C31 AXT 1175 B 1 HETATM 34 C C32 AXT . . . E 3 35.06 76.676 12.058 1 20.92 ? C32 AXT 1175 B 1 HETATM 35 C C33 AXT . . . E 3 33.729 76.513 12.58 1 19.16 ? C33 AXT 1175 B 1 HETATM 36 C C34 AXT . . . E 3 32.7 77.277 11.978 1 16.57 ? C34 AXT 1175 B 1 HETATM 37 C C35 AXT . . . E 3 31.36 77.159 12.313 1 15.3 ? C35 AXT 1175 B 1 HETATM 38 C C36 AXT . . . E 3 41.121 76.133 8.82 1 22.84 ? C36 AXT 1175 B 1 HETATM 39 C C37 AXT . . . E 3 42.13 77.963 10.22 1 22.2 ? C37 AXT 1175 B 1 HETATM 40 C C38 AXT . . . E 3 43.62 74.105 12.445 1 24.07 ? C38 AXT 1175 B 1 HETATM 41 C C39 AXT . . . E 3 38.667 74.5 13.266 1 25.88 ? C39 AXT 1175 B 1 HETATM 42 C C40 AXT . . . E 3 33.428 75.509 13.696 1 17.2 ? C40 AXT 1175 B 1 HETATM 43 O O24 AXT . . . E 3 45.823 75.174 10.917 1 28.63 ? O24 AXT 1175 B 1 HETATM 44 O O23 AXT . . . E 3 45.755 76.723 8.804 1 29.41 ? O23 AXT 1175 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 44 #