data_1GKA # _model_server_result.job_id zeCiwRhEERs3scFsJqepZg _model_server_result.datetime_utc '2025-02-26 16:18:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1gka # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1183}' # _entry.id 1GKA # _exptl.entry_id 1GKA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 170.335 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1GKA _cell.length_a 155.466 _cell.length_b 155.466 _cell.length_c 168.504 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1GKA _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 11 A CYS 12 1_555 A SG CYS 120 A CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 50 A CYS 51 1_555 A SG CYS 172 A CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf3 A SG CYS 116 A CYS 117 1_555 A SG CYS 149 A CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? disulf ? disulf4 B SG CYS 12 B CYS 12 1_555 B SG CYS 119 B CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf5 B SG CYS 46 B CYS 46 1_555 B SG CYS 170 B CYS 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? # _chem_comp.formula 'C12 H26' _chem_comp.formula_weight 170.335 _chem_comp.id D12 _chem_comp.mon_nstd_flag . _chem_comp.name DODECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 D12 sing 180 n n C1 H11 D12 sing 181 n n C1 H12 D12 sing 182 n n C1 H13 D12 sing 183 n n C2 C3 D12 sing 184 n n C2 H21 D12 sing 185 n n C2 H22 D12 sing 186 n n C3 C4 D12 sing 187 n n C3 H31 D12 sing 188 n n C3 H32 D12 sing 189 n n C4 C5 D12 sing 190 n n C4 H41 D12 sing 191 n n C4 H42 D12 sing 192 n n C5 C6 D12 sing 193 n n C5 H51 D12 sing 194 n n C5 H52 D12 sing 195 n n C6 C7 D12 sing 196 n n C6 H61 D12 sing 197 n n C6 H62 D12 sing 198 n n C7 C8 D12 sing 199 n n C7 H71 D12 sing 200 n n C7 H72 D12 sing 201 n n C8 C9 D12 sing 202 n n C8 H81 D12 sing 203 n n C8 H82 D12 sing 204 n n C9 C10 D12 sing 205 n n C9 H91 D12 sing 206 n n C9 H92 D12 sing 207 n n C10 C11 D12 sing 208 n n C10 H101 D12 sing 209 n n C10 H102 D12 sing 210 n n C11 C12 D12 sing 211 n n C11 H111 D12 sing 212 n n C11 H112 D12 sing 213 n n C12 H121 D12 sing 214 n n C12 H122 D12 sing 215 n n C12 H123 D12 sing 216 n n # _atom_sites.entry_id 1GKA _atom_sites.fract_transf_matrix[1][1] 0.006432 _atom_sites.fract_transf_matrix[1][2] 0.003714 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007427 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005934 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 AXT A 1 1182 1182 AXT AXT . D 4 D12 A 1 1183 1183 D12 D12 . E 3 AXT B 1 1175 1175 AXT AXT . F 5 TRS B 1 1176 1176 TRS TRS . G 6 EPE B 1 1177 1177 EPE EPE . H 7 HOH A 1 2001 2001 HOH HOH . H 7 HOH A 2 2002 2002 HOH HOH . H 7 HOH A 3 2003 2003 HOH HOH . H 7 HOH A 4 2004 2004 HOH HOH . H 7 HOH A 5 2005 2005 HOH HOH . H 7 HOH A 6 2006 2006 HOH HOH . H 7 HOH A 7 2007 2007 HOH HOH . H 7 HOH A 8 2008 2008 HOH HOH . H 7 HOH A 9 2009 2009 HOH HOH . H 7 HOH A 10 2010 2010 HOH HOH . H 7 HOH A 11 2011 2011 HOH HOH . I 7 HOH B 1 2001 2001 HOH HOH . I 7 HOH B 2 2002 2002 HOH HOH . I 7 HOH B 3 2003 2003 HOH HOH . I 7 HOH B 4 2004 2004 HOH HOH . I 7 HOH B 5 2005 2005 HOH HOH . I 7 HOH B 6 2006 2006 HOH HOH . I 7 HOH B 7 2007 2007 HOH HOH . I 7 HOH B 8 2008 2008 HOH HOH . I 7 HOH B 9 2009 2009 HOH HOH . I 7 HOH B 10 2010 2010 HOH HOH . I 7 HOH B 11 2011 2011 HOH HOH . I 7 HOH B 12 2012 2012 HOH HOH . I 7 HOH B 13 2013 2013 HOH HOH . I 7 HOH B 14 2014 2014 HOH HOH . I 7 HOH B 15 2015 2015 HOH HOH . I 7 HOH B 16 2016 2016 HOH HOH . I 7 HOH B 17 2017 2017 HOH HOH . I 7 HOH B 18 2018 2018 HOH HOH . I 7 HOH B 19 2019 2019 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 D12 . . . D 4 34.375 76.469 21.655 1 81.85 ? C1 D12 1183 A 1 HETATM 2 C C2 D12 . . . D 4 34.862 75.459 20.612 1 82.84 ? C2 D12 1183 A 1 HETATM 3 C C3 D12 . . . D 4 36.332 75.707 20.382 1 82.42 ? C3 D12 1183 A 1 HETATM 4 C C4 D12 . . . D 4 36.781 75.567 18.93 1 81.97 ? C4 D12 1183 A 1 HETATM 5 C C5 D12 . . . D 4 38.308 75.923 18.821 1 80.99 ? C5 D12 1183 A 1 HETATM 6 C C6 D12 . . . D 4 38.881 75.85 17.384 1 79.8 ? C6 D12 1183 A 1 HETATM 7 C C7 D12 . . . D 4 38.624 77.101 16.522 1 78.25 ? C7 D12 1183 A 1 HETATM 8 C C8 D12 . . . D 4 37.142 77.322 16.367 1 78.38 ? C8 D12 1183 A 1 HETATM 9 C C9 D12 . . . D 4 36.78 78.364 15.37 1 79.07 ? C9 D12 1183 A 1 HETATM 10 C C10 D12 . . . D 4 35.26 78.478 15.408 1 80.24 ? C10 D12 1183 A 1 HETATM 11 C C11 D12 . . . D 4 34.782 79.553 14.457 1 80.97 ? C11 D12 1183 A 1 HETATM 12 C C12 D12 . . . D 4 33.259 79.716 14.485 1 81.21 ? C12 D12 1183 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 12 #