data_1GKY # _model_server_result.job_id p0qJHUretqkM2hcAUtaWyg _model_server_result.datetime_utc '2024-11-08 14:32:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1gky # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":187}' # _entry.id 1GKY # _exptl.entry_id 1GKY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 363.221 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1GKY _cell.length_a 50.8 _cell.length_b 50.8 _cell.length_c 155.3 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1GKY _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id C _struct_conn.ptnr1_label_comp_id ACE _struct_conn.ptnr1_label_seq_id 1 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id ACE _struct_conn.ptnr1_auth_seq_id 0 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id N _struct_conn.ptnr2_label_comp_id SER _struct_conn.ptnr2_label_seq_id 2 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id SER _struct_conn.ptnr2_auth_seq_id 1 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.333 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H14 N5 O8 P' _chem_comp.formula_weight 363.221 _chem_comp.id 5GP _chem_comp.mon_nstd_flag . _chem_comp.name "GUANOSINE-5'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P 5GP doub 1 n n P O2P 5GP sing 2 n n P O3P 5GP sing 3 n n P O5' 5GP sing 4 n n O2P HOP2 5GP sing 5 n n O3P HOP3 5GP sing 6 n n O5' C5' 5GP sing 7 n n C5' C4' 5GP sing 8 n n C5' "H5'1" 5GP sing 9 n n C5' "H5'2" 5GP sing 10 n n C4' O4' 5GP sing 11 n n C4' C3' 5GP sing 12 n n C4' H4' 5GP sing 13 n n O4' C1' 5GP sing 14 n n C3' O3' 5GP sing 15 n n C3' C2' 5GP sing 16 n n C3' H3' 5GP sing 17 n n O3' HO3' 5GP sing 18 n n C2' O2' 5GP sing 19 n n C2' C1' 5GP sing 20 n n C2' H2' 5GP sing 21 n n O2' HO2' 5GP sing 22 n n C1' N9 5GP sing 23 n n C1' H1' 5GP sing 24 n n N9 C8 5GP sing 25 n y N9 C4 5GP sing 26 n y C8 N7 5GP doub 27 n y C8 H8 5GP sing 28 n n N7 C5 5GP sing 29 n y C5 C6 5GP sing 30 n n C5 C4 5GP doub 31 n y C6 O6 5GP doub 32 n n C6 N1 5GP sing 33 n n N1 C2 5GP sing 34 n n N1 HN1 5GP sing 35 n n C2 N2 5GP sing 36 n n C2 N3 5GP doub 37 n n N2 HN21 5GP sing 38 n n N2 HN22 5GP sing 39 n n N3 C4 5GP sing 40 n n # _atom_sites.entry_id 1GKY _atom_sites.fract_transf_matrix[1][1] 0.019685 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019685 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006439 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 188 188 SO4 SO4 . C 3 5GP A 1 187 187 5GP 5GP . D 4 HOH A 1 189 1 HOH HOH . D 4 HOH A 2 190 2 HOH HOH . D 4 HOH A 3 191 3 HOH HOH . D 4 HOH A 4 192 4 HOH HOH . D 4 HOH A 5 193 5 HOH HOH . D 4 HOH A 6 194 6 HOH HOH . D 4 HOH A 7 195 7 HOH HOH . D 4 HOH A 8 196 8 HOH HOH . D 4 HOH A 9 197 9 HOH HOH . D 4 HOH A 10 198 10 HOH HOH . D 4 HOH A 11 199 11 HOH HOH . D 4 HOH A 12 200 12 HOH HOH . D 4 HOH A 13 201 13 HOH HOH . D 4 HOH A 14 202 14 HOH HOH . D 4 HOH A 15 203 15 HOH HOH . D 4 HOH A 16 204 16 HOH HOH . D 4 HOH A 17 205 17 HOH HOH . D 4 HOH A 18 206 18 HOH HOH . D 4 HOH A 19 207 19 HOH HOH . D 4 HOH A 20 208 20 HOH HOH . D 4 HOH A 21 209 21 HOH HOH . D 4 HOH A 22 210 22 HOH HOH . D 4 HOH A 23 211 23 HOH HOH . D 4 HOH A 24 212 24 HOH HOH . D 4 HOH A 25 213 25 HOH HOH . D 4 HOH A 26 214 26 HOH HOH . D 4 HOH A 27 215 27 HOH HOH . D 4 HOH A 28 216 28 HOH HOH . D 4 HOH A 29 217 29 HOH HOH . D 4 HOH A 30 218 30 HOH HOH . D 4 HOH A 31 219 31 HOH HOH . D 4 HOH A 32 220 32 HOH HOH . D 4 HOH A 33 221 33 HOH HOH . D 4 HOH A 34 222 34 HOH HOH . D 4 HOH A 35 223 35 HOH HOH . D 4 HOH A 36 224 36 HOH HOH . D 4 HOH A 37 225 37 HOH HOH . D 4 HOH A 38 226 38 HOH HOH . D 4 HOH A 39 227 39 HOH HOH . D 4 HOH A 40 228 40 HOH HOH . D 4 HOH A 41 229 41 HOH HOH . D 4 HOH A 42 230 42 HOH HOH . D 4 HOH A 43 231 43 HOH HOH . D 4 HOH A 44 232 44 HOH HOH . D 4 HOH A 45 233 45 HOH HOH . D 4 HOH A 46 234 46 HOH HOH . D 4 HOH A 47 235 47 HOH HOH . D 4 HOH A 48 236 48 HOH HOH . D 4 HOH A 49 237 49 HOH HOH . D 4 HOH A 50 238 50 HOH HOH . D 4 HOH A 51 239 51 HOH HOH . D 4 HOH A 52 240 52 HOH HOH . D 4 HOH A 53 241 53 HOH HOH . D 4 HOH A 54 242 54 HOH HOH . D 4 HOH A 55 243 55 HOH HOH . D 4 HOH A 56 244 56 HOH HOH . D 4 HOH A 57 245 57 HOH HOH . D 4 HOH A 58 246 58 HOH HOH . D 4 HOH A 59 247 59 HOH HOH . D 4 HOH A 60 248 60 HOH HOH . D 4 HOH A 61 249 61 HOH HOH . D 4 HOH A 62 250 62 HOH HOH . D 4 HOH A 63 251 63 HOH HOH . D 4 HOH A 64 252 64 HOH HOH . D 4 HOH A 65 253 65 HOH HOH . D 4 HOH A 66 254 66 HOH HOH . D 4 HOH A 67 255 67 HOH HOH . D 4 HOH A 68 256 68 HOH HOH . D 4 HOH A 69 257 69 HOH HOH . D 4 HOH A 70 258 70 HOH HOH . D 4 HOH A 71 259 71 HOH HOH . D 4 HOH A 72 260 72 HOH HOH . D 4 HOH A 73 261 73 HOH HOH . D 4 HOH A 74 262 74 HOH HOH . D 4 HOH A 75 263 75 HOH HOH . D 4 HOH A 76 264 76 HOH HOH . D 4 HOH A 77 265 77 HOH HOH . D 4 HOH A 78 266 78 HOH HOH . D 4 HOH A 79 267 79 HOH HOH . D 4 HOH A 80 268 80 HOH HOH . D 4 HOH A 81 269 81 HOH HOH . D 4 HOH A 82 270 82 HOH HOH . D 4 HOH A 83 271 83 HOH HOH . D 4 HOH A 84 272 84 HOH HOH . D 4 HOH A 85 273 85 HOH HOH . D 4 HOH A 86 274 86 HOH HOH . D 4 HOH A 87 275 87 HOH HOH . D 4 HOH A 88 276 88 HOH HOH . D 4 HOH A 89 277 89 HOH HOH . D 4 HOH A 90 278 90 HOH HOH . D 4 HOH A 91 279 91 HOH HOH . D 4 HOH A 92 280 92 HOH HOH . D 4 HOH A 93 281 93 HOH HOH . D 4 HOH A 94 282 94 HOH HOH . D 4 HOH A 95 283 95 HOH HOH . D 4 HOH A 96 284 96 HOH HOH . D 4 HOH A 97 285 97 HOH HOH . D 4 HOH A 98 286 98 HOH HOH . D 4 HOH A 99 287 99 HOH HOH . D 4 HOH A 100 288 100 HOH HOH . D 4 HOH A 101 289 101 HOH HOH . D 4 HOH A 102 290 102 HOH HOH . D 4 HOH A 103 291 103 HOH HOH . D 4 HOH A 104 292 104 HOH HOH . D 4 HOH A 105 293 105 HOH HOH . D 4 HOH A 106 294 106 HOH HOH . D 4 HOH A 107 295 107 HOH HOH . D 4 HOH A 108 296 108 HOH HOH . D 4 HOH A 109 297 109 HOH HOH . D 4 HOH A 110 298 110 HOH HOH . D 4 HOH A 111 299 111 HOH HOH . D 4 HOH A 112 300 112 HOH HOH . D 4 HOH A 113 301 113 HOH HOH . D 4 HOH A 114 302 114 HOH HOH . D 4 HOH A 115 303 115 HOH HOH . D 4 HOH A 116 304 116 HOH HOH . D 4 HOH A 117 305 117 HOH HOH . D 4 HOH A 118 306 118 HOH HOH . D 4 HOH A 119 307 119 HOH HOH . D 4 HOH A 120 308 120 HOH HOH . D 4 HOH A 121 309 121 HOH HOH . D 4 HOH A 122 310 122 HOH HOH . D 4 HOH A 123 311 123 HOH HOH . D 4 HOH A 124 312 124 HOH HOH . D 4 HOH A 125 313 125 HOH HOH . D 4 HOH A 126 314 126 HOH HOH . D 4 HOH A 127 315 127 HOH HOH . D 4 HOH A 128 316 128 HOH HOH . D 4 HOH A 129 317 129 HOH HOH . D 4 HOH A 130 318 130 HOH HOH . D 4 HOH A 131 319 131 HOH HOH . D 4 HOH A 132 320 132 HOH HOH . D 4 HOH A 133 321 133 HOH HOH . D 4 HOH A 134 322 134 HOH HOH . D 4 HOH A 135 323 135 HOH HOH . D 4 HOH A 136 324 136 HOH HOH . D 4 HOH A 137 325 137 HOH HOH . D 4 HOH A 138 326 138 HOH HOH . D 4 HOH A 139 327 139 HOH HOH . D 4 HOH A 140 328 140 HOH HOH . D 4 HOH A 141 329 141 HOH HOH . D 4 HOH A 142 330 142 HOH HOH . D 4 HOH A 143 331 143 HOH HOH . D 4 HOH A 144 332 144 HOH HOH . D 4 HOH A 145 333 145 HOH HOH . D 4 HOH A 146 334 146 HOH HOH . D 4 HOH A 147 335 147 HOH HOH . D 4 HOH A 148 336 148 HOH HOH . D 4 HOH A 149 337 149 HOH HOH . D 4 HOH A 150 338 150 HOH HOH . D 4 HOH A 151 339 151 HOH HOH . D 4 HOH A 152 340 152 HOH HOH . D 4 HOH A 153 341 153 HOH HOH . D 4 HOH A 154 342 154 HOH HOH . D 4 HOH A 155 343 155 HOH HOH . D 4 HOH A 156 344 156 HOH HOH . D 4 HOH A 157 345 157 HOH HOH . D 4 HOH A 158 346 158 HOH HOH . D 4 HOH A 159 347 159 HOH HOH . D 4 HOH A 160 348 160 HOH HOH . D 4 HOH A 161 349 161 HOH HOH . D 4 HOH A 162 350 162 HOH HOH . D 4 HOH A 163 351 163 HOH HOH . D 4 HOH A 164 352 164 HOH HOH . D 4 HOH A 165 353 165 HOH HOH . D 4 HOH A 166 354 166 HOH HOH . D 4 HOH A 167 355 167 HOH HOH . D 4 HOH A 168 356 168 HOH HOH . D 4 HOH A 169 357 169 HOH HOH . D 4 HOH A 170 358 170 HOH HOH . D 4 HOH A 171 359 171 HOH HOH . D 4 HOH A 172 360 172 HOH HOH . D 4 HOH A 173 361 173 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 5GP . . . C 3 29.875 44.488 69.823 1 19.62 ? P 5GP 187 A 1 HETATM 2 O O1P 5GP . . . C 3 30.319 45.004 71.073 1 20.2 ? O1P 5GP 187 A 1 HETATM 3 O O2P 5GP . . . C 3 28.526 44.888 69.143 1 19.86 ? O2P 5GP 187 A 1 HETATM 4 O O3P 5GP . . . C 3 30.764 44.617 68.702 1 23.42 ? O3P 5GP 187 A 1 HETATM 5 O O5' 5GP . . . C 3 29.683 43.016 70.027 1 20.32 ? O5' 5GP 187 A 1 HETATM 6 C C5' 5GP . . . C 3 30.74 42.297 70.837 1 21.47 ? C5' 5GP 187 A 1 HETATM 7 C C4' 5GP . . . C 3 30.677 40.747 70.77 1 21.56 ? C4' 5GP 187 A 1 HETATM 8 O O4' 5GP . . . C 3 29.608 40.16 71.599 1 20.5 ? O4' 5GP 187 A 1 HETATM 9 C C3' 5GP . . . C 3 30.547 40.121 69.352 1 20.18 ? C3' 5GP 187 A 1 HETATM 10 O O3' 5GP . . . C 3 31.228 38.864 69.416 1 23.65 ? O3' 5GP 187 A 1 HETATM 11 C C2' 5GP . . . C 3 29.031 39.871 69.248 1 18.78 ? C2' 5GP 187 A 1 HETATM 12 O O2' 5GP . . . C 3 28.685 38.69 68.496 1 20.45 ? O2' 5GP 187 A 1 HETATM 13 C C1' 5GP . . . C 3 28.634 39.641 70.688 1 17.09 ? C1' 5GP 187 A 1 HETATM 14 N N9 5GP . . . C 3 27.238 39.525 71.076 1 15.35 ? N9 5GP 187 A 1 HETATM 15 C C8 5GP . . . C 3 26.33 40.535 70.852 1 12.57 ? C8 5GP 187 A 1 HETATM 16 N N7 5GP . . . C 3 25.175 40.314 71.417 1 12.88 ? N7 5GP 187 A 1 HETATM 17 C C5 5GP . . . C 3 25.278 39.082 72.07 1 10.75 ? C5 5GP 187 A 1 HETATM 18 C C6 5GP . . . C 3 24.326 38.354 72.827 1 9.77 ? C6 5GP 187 A 1 HETATM 19 O O6 5GP . . . C 3 23.169 38.678 73.029 1 8.66 ? O6 5GP 187 A 1 HETATM 20 N N1 5GP . . . C 3 24.836 37.19 73.27 1 9.67 ? N1 5GP 187 A 1 HETATM 21 C C2 5GP . . . C 3 26.075 36.701 73.001 1 9.84 ? C2 5GP 187 A 1 HETATM 22 N N2 5GP . . . C 3 26.361 35.49 73.52 1 9.77 ? N2 5GP 187 A 1 HETATM 23 N N3 5GP . . . C 3 27.005 37.353 72.31 1 10.31 ? N3 5GP 187 A 1 HETATM 24 C C4 5GP . . . C 3 26.583 38.559 71.844 1 12.5 ? C4 5GP 187 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 372 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 24 #