data_1GL0 # _model_server_result.job_id HkrojRRUEYq0p9Tt0jjeaw _model_server_result.datetime_utc '2025-01-27 00:16:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1gl0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1246}' # _entry.id 1GL0 # _exptl.entry_id 1GL0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1GL0 _cell.length_a 85.853 _cell.length_b 85.853 _cell.length_c 187.983 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1GL0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 1 E CYS 1 1_555 A SG CYS 122 E CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 42 E CYS 42 1_555 A SG CYS 58 E CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf3 A SG CYS 136 E CYS 136 1_555 A SG CYS 201 E CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 A SG CYS 168 E CYS 168 1_555 A SG CYS 182 E CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf5 A SG CYS 191 E CYS 191 1_555 A SG CYS 220 E CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 B SG CYS 4 I CYS 4 1_555 B SG CYS 19 I CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf7 B SG CYS 14 I CYS 14 1_555 B SG CYS 32 I CYS 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf8 B SG CYS 17 I CYS 17 1_555 B SG CYS 27 I CYS 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc1 A OE2 GLU 49 E GLU 49 1_555 D CD CD . E CD 1247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc2 A OE1 GLU 49 E GLU 49 1_555 D CD CD . E CD 1247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc3 A OD2 ASP 72 E ASP 72 1_555 C CD CD . E CD 1246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? metalc ? metalc4 A OD1 ASP 72 E ASP 72 1_555 C CD CD . E CD 1246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? metalc ? metalc5 A OD2 ASP 128 E ASP 128 10_665 D CD CD . E CD 1247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc6 A OD1 ASP 128 E ASP 128 10_665 D CD CD . E CD 1247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc7 A OD2 ASP 153 E ASP 153 1_555 C CD CD . E CD 1246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc8 A OD1 ASP 178 E ASP 178 5_565 C CD CD . E CD 1246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc9 A OD2 ASP 178 E ASP 178 5_565 C CD CD . E CD 1246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? metalc ? metalc10 A OXT ASN 245 E ASN 245 1_555 E CD CD . E CD 1248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.718 ? metalc ? metalc11 A O ASN 245 E ASN 245 1_555 E CD CD . E CD 1248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.072 ? metalc ? metalc12 C CD CD . E CD 1246 1_555 F O HOH . E HOH 2014 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc13 D CD CD . E CD 1247 1_555 F O HOH . E HOH 2021 10_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? metalc ? metalc14 D CD CD . E CD 1247 1_555 F O HOH . E HOH 2042 10_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? metalc ? metalc15 E CD CD . E CD 1248 1_555 F O HOH . E HOH 2008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1GL0 _atom_sites.fract_transf_matrix[1][1] 0.011648 _atom_sites.fract_transf_matrix[1][2] 0.006725 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01345 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00532 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CD E 1 1246 1246 CD CD . D 3 CD E 1 1247 1247 CD CD . E 3 CD E 1 1248 1248 CD CD . F 4 HOH E 1 2001 2001 HOH HOH . F 4 HOH E 2 2002 2002 HOH HOH . F 4 HOH E 3 2003 2003 HOH HOH . F 4 HOH E 4 2004 2004 HOH HOH . F 4 HOH E 5 2005 2005 HOH HOH . F 4 HOH E 6 2006 2006 HOH HOH . F 4 HOH E 7 2007 2007 HOH HOH . F 4 HOH E 8 2008 2008 HOH HOH . F 4 HOH E 9 2009 2009 HOH HOH . F 4 HOH E 10 2010 2010 HOH HOH . F 4 HOH E 11 2011 2011 HOH HOH . F 4 HOH E 12 2012 2012 HOH HOH . F 4 HOH E 13 2013 2013 HOH HOH . F 4 HOH E 14 2014 2014 HOH HOH . F 4 HOH E 15 2015 2015 HOH HOH . F 4 HOH E 16 2016 2016 HOH HOH . F 4 HOH E 17 2017 2017 HOH HOH . F 4 HOH E 18 2018 2018 HOH HOH . F 4 HOH E 19 2019 2019 HOH HOH . F 4 HOH E 20 2020 2020 HOH HOH . F 4 HOH E 21 2021 2021 HOH HOH . F 4 HOH E 22 2022 2022 HOH HOH . F 4 HOH E 23 2023 2023 HOH HOH . F 4 HOH E 24 2024 2024 HOH HOH . F 4 HOH E 25 2025 2025 HOH HOH . F 4 HOH E 26 2026 2026 HOH HOH . F 4 HOH E 27 2027 2027 HOH HOH . F 4 HOH E 28 2028 2028 HOH HOH . F 4 HOH E 29 2029 2029 HOH HOH . F 4 HOH E 30 2030 2030 HOH HOH . F 4 HOH E 31 2031 2031 HOH HOH . F 4 HOH E 32 2032 2032 HOH HOH . F 4 HOH E 33 2033 2033 HOH HOH . F 4 HOH E 34 2034 2034 HOH HOH . F 4 HOH E 35 2035 2035 HOH HOH . F 4 HOH E 36 2036 2036 HOH HOH . F 4 HOH E 37 2037 2037 HOH HOH . F 4 HOH E 38 2038 2038 HOH HOH . F 4 HOH E 39 2039 2039 HOH HOH . F 4 HOH E 40 2040 2040 HOH HOH . F 4 HOH E 41 2041 2041 HOH HOH . F 4 HOH E 42 2042 2042 HOH HOH . F 4 HOH E 43 2043 2043 HOH HOH . F 4 HOH E 44 2044 2044 HOH HOH . F 4 HOH E 45 2045 2045 HOH HOH . F 4 HOH E 46 2046 2046 HOH HOH . F 4 HOH E 47 2047 2047 HOH HOH . F 4 HOH E 48 2048 2048 HOH HOH . F 4 HOH E 49 2049 2049 HOH HOH . F 4 HOH E 50 2050 2050 HOH HOH . F 4 HOH E 51 2051 2051 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 11.897 _atom_site.Cartn_y 75.25 _atom_site.Cartn_z 26.45 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 19.01 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 1246 _atom_site.auth_asym_id E _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #