data_1GL7 # _model_server_result.job_id Bq7VR2WKEUywjR1ZEtRPOQ _model_server_result.datetime_utc '2024-12-21 14:09:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1gl7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":701}' # _entry.id 1GL7 # _exptl.entry_id 1GL7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1GL7 _cell.length_a 152.7 _cell.length_b 152.7 _cell.length_c 252.1 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1GL7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 1GL7 _atom_sites.fract_transf_matrix[1][1] 0.006549 _atom_sites.fract_transf_matrix[1][2] 0.003781 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007562 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003967 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 ANP A 1 701 701 ANP ANP . H 3 CL A 1 702 702 CL CL . I 2 ANP B 1 701 701 ANP ANP . J 2 ANP D 1 701 701 ANP ANP . K 2 ANP E 1 701 701 ANP ANP . L 2 ANP F 1 701 701 ANP ANP . M 2 ANP G 1 701 701 ANP ANP . N 4 HOH A 1 2001 2001 HOH HOH . N 4 HOH A 2 2002 2002 HOH HOH . N 4 HOH A 3 2003 2003 HOH HOH . N 4 HOH A 4 2004 2004 HOH HOH . N 4 HOH A 5 2005 2005 HOH HOH . N 4 HOH A 6 2006 2006 HOH HOH . N 4 HOH A 7 2007 2007 HOH HOH . N 4 HOH A 8 2008 2008 HOH HOH . N 4 HOH A 9 2009 2009 HOH HOH . N 4 HOH A 10 2010 2010 HOH HOH . N 4 HOH A 11 2011 2011 HOH HOH . N 4 HOH A 12 2012 2012 HOH HOH . N 4 HOH A 13 2013 2013 HOH HOH . N 4 HOH A 14 2014 2014 HOH HOH . N 4 HOH A 15 2015 2015 HOH HOH . N 4 HOH A 16 2016 2016 HOH HOH . N 4 HOH A 17 2017 2017 HOH HOH . N 4 HOH A 18 2018 2018 HOH HOH . N 4 HOH A 19 2019 2019 HOH HOH . N 4 HOH A 20 2020 2020 HOH HOH . N 4 HOH A 21 2021 2021 HOH HOH . N 4 HOH A 22 2022 2022 HOH HOH . N 4 HOH A 23 2023 2023 HOH HOH . N 4 HOH A 24 2024 2024 HOH HOH . N 4 HOH A 25 2025 2025 HOH HOH . N 4 HOH A 26 2026 2026 HOH HOH . N 4 HOH A 27 2027 2027 HOH HOH . N 4 HOH A 28 2028 2028 HOH HOH . N 4 HOH A 29 2029 2029 HOH HOH . N 4 HOH A 30 2030 2030 HOH HOH . O 4 HOH B 1 2001 2001 HOH HOH . O 4 HOH B 2 2002 2002 HOH HOH . O 4 HOH B 3 2003 2003 HOH HOH . O 4 HOH B 4 2004 2004 HOH HOH . O 4 HOH B 5 2005 2005 HOH HOH . O 4 HOH B 6 2006 2006 HOH HOH . O 4 HOH B 7 2007 2007 HOH HOH . O 4 HOH B 8 2008 2008 HOH HOH . O 4 HOH B 9 2009 2009 HOH HOH . O 4 HOH B 10 2010 2010 HOH HOH . O 4 HOH B 11 2011 2011 HOH HOH . O 4 HOH B 12 2012 2012 HOH HOH . O 4 HOH B 13 2013 2013 HOH HOH . O 4 HOH B 14 2014 2014 HOH HOH . O 4 HOH B 15 2015 2015 HOH HOH . O 4 HOH B 16 2016 2016 HOH HOH . O 4 HOH B 17 2017 2017 HOH HOH . O 4 HOH B 18 2018 2018 HOH HOH . O 4 HOH B 19 2019 2019 HOH HOH . O 4 HOH B 20 2020 2020 HOH HOH . O 4 HOH B 21 2021 2021 HOH HOH . O 4 HOH B 22 2022 2022 HOH HOH . O 4 HOH B 23 2023 2023 HOH HOH . O 4 HOH B 24 2024 2024 HOH HOH . O 4 HOH B 25 2025 2025 HOH HOH . O 4 HOH B 26 2026 2026 HOH HOH . O 4 HOH B 27 2027 2027 HOH HOH . O 4 HOH B 28 2028 2028 HOH HOH . O 4 HOH B 29 2029 2029 HOH HOH . P 4 HOH D 1 2001 2001 HOH HOH . P 4 HOH D 2 2002 2002 HOH HOH . P 4 HOH D 3 2003 2003 HOH HOH . P 4 HOH D 4 2004 2004 HOH HOH . P 4 HOH D 5 2005 2005 HOH HOH . P 4 HOH D 6 2006 2006 HOH HOH . P 4 HOH D 7 2007 2007 HOH HOH . P 4 HOH D 8 2008 2008 HOH HOH . P 4 HOH D 9 2009 2009 HOH HOH . P 4 HOH D 10 2010 2010 HOH HOH . P 4 HOH D 11 2011 2011 HOH HOH . P 4 HOH D 12 2012 2012 HOH HOH . P 4 HOH D 13 2013 2013 HOH HOH . P 4 HOH D 14 2014 2014 HOH HOH . P 4 HOH D 15 2015 2015 HOH HOH . P 4 HOH D 16 2016 2016 HOH HOH . P 4 HOH D 17 2017 2017 HOH HOH . P 4 HOH D 18 2018 2018 HOH HOH . P 4 HOH D 19 2019 2019 HOH HOH . P 4 HOH D 20 2020 2020 HOH HOH . P 4 HOH D 21 2021 2021 HOH HOH . P 4 HOH D 22 2022 2022 HOH HOH . P 4 HOH D 23 2023 2023 HOH HOH . P 4 HOH D 24 2024 2024 HOH HOH . P 4 HOH D 25 2025 2025 HOH HOH . P 4 HOH D 26 2026 2026 HOH HOH . P 4 HOH D 27 2027 2027 HOH HOH . P 4 HOH D 28 2028 2028 HOH HOH . P 4 HOH D 29 2029 2029 HOH HOH . P 4 HOH D 30 2030 2030 HOH HOH . P 4 HOH D 31 2031 2031 HOH HOH . P 4 HOH D 32 2032 2032 HOH HOH . P 4 HOH D 33 2033 2033 HOH HOH . P 4 HOH D 34 2034 2034 HOH HOH . P 4 HOH D 35 2035 2035 HOH HOH . P 4 HOH D 36 2036 2036 HOH HOH . P 4 HOH D 37 2037 2037 HOH HOH . P 4 HOH D 38 2038 2038 HOH HOH . P 4 HOH D 39 2039 2039 HOH HOH . Q 4 HOH E 1 2001 2001 HOH HOH . Q 4 HOH E 2 2002 2002 HOH HOH . Q 4 HOH E 3 2003 2003 HOH HOH . Q 4 HOH E 4 2004 2004 HOH HOH . Q 4 HOH E 5 2005 2005 HOH HOH . Q 4 HOH E 6 2006 2006 HOH HOH . Q 4 HOH E 7 2007 2007 HOH HOH . Q 4 HOH E 8 2008 2008 HOH HOH . Q 4 HOH E 9 2009 2009 HOH HOH . Q 4 HOH E 10 2010 2010 HOH HOH . Q 4 HOH E 11 2011 2011 HOH HOH . Q 4 HOH E 12 2012 2012 HOH HOH . Q 4 HOH E 13 2013 2013 HOH HOH . Q 4 HOH E 14 2014 2014 HOH HOH . Q 4 HOH E 15 2015 2015 HOH HOH . Q 4 HOH E 16 2016 2016 HOH HOH . Q 4 HOH E 17 2017 2017 HOH HOH . Q 4 HOH E 18 2018 2018 HOH HOH . Q 4 HOH E 19 2019 2019 HOH HOH . Q 4 HOH E 20 2020 2020 HOH HOH . Q 4 HOH E 21 2021 2021 HOH HOH . Q 4 HOH E 22 2022 2022 HOH HOH . Q 4 HOH E 23 2023 2023 HOH HOH . Q 4 HOH E 24 2024 2024 HOH HOH . Q 4 HOH E 25 2025 2025 HOH HOH . Q 4 HOH E 26 2026 2026 HOH HOH . Q 4 HOH E 27 2027 2027 HOH HOH . Q 4 HOH E 28 2028 2028 HOH HOH . Q 4 HOH E 29 2029 2029 HOH HOH . Q 4 HOH E 30 2030 2030 HOH HOH . Q 4 HOH E 31 2031 2031 HOH HOH . Q 4 HOH E 32 2032 2032 HOH HOH . Q 4 HOH E 33 2033 2033 HOH HOH . Q 4 HOH E 34 2034 2034 HOH HOH . Q 4 HOH E 35 2035 2035 HOH HOH . Q 4 HOH E 36 2036 2036 HOH HOH . Q 4 HOH E 37 2037 2037 HOH HOH . Q 4 HOH E 38 2038 2038 HOH HOH . Q 4 HOH E 39 2039 2039 HOH HOH . Q 4 HOH E 40 2040 2040 HOH HOH . Q 4 HOH E 41 2041 2041 HOH HOH . Q 4 HOH E 42 2042 2042 HOH HOH . Q 4 HOH E 43 2043 2043 HOH HOH . Q 4 HOH E 44 2044 2044 HOH HOH . Q 4 HOH E 45 2045 2045 HOH HOH . Q 4 HOH E 46 2046 2046 HOH HOH . Q 4 HOH E 47 2047 2047 HOH HOH . Q 4 HOH E 48 2048 2048 HOH HOH . Q 4 HOH E 49 2049 2049 HOH HOH . Q 4 HOH E 50 2050 2050 HOH HOH . Q 4 HOH E 51 2051 2051 HOH HOH . Q 4 HOH E 52 2052 2052 HOH HOH . Q 4 HOH E 53 2053 2053 HOH HOH . R 4 HOH F 1 2001 2001 HOH HOH . R 4 HOH F 2 2002 2002 HOH HOH . R 4 HOH F 3 2003 2003 HOH HOH . R 4 HOH F 4 2004 2004 HOH HOH . R 4 HOH F 5 2005 2005 HOH HOH . R 4 HOH F 6 2006 2006 HOH HOH . R 4 HOH F 7 2007 2007 HOH HOH . R 4 HOH F 8 2008 2008 HOH HOH . R 4 HOH F 9 2009 2009 HOH HOH . R 4 HOH F 10 2010 2010 HOH HOH . R 4 HOH F 11 2011 2011 HOH HOH . R 4 HOH F 12 2012 2012 HOH HOH . R 4 HOH F 13 2013 2013 HOH HOH . R 4 HOH F 14 2014 2014 HOH HOH . R 4 HOH F 15 2015 2015 HOH HOH . R 4 HOH F 16 2016 2016 HOH HOH . R 4 HOH F 17 2017 2017 HOH HOH . R 4 HOH F 18 2018 2018 HOH HOH . R 4 HOH F 19 2019 2019 HOH HOH . R 4 HOH F 20 2020 2020 HOH HOH . R 4 HOH F 21 2021 2021 HOH HOH . R 4 HOH F 22 2022 2022 HOH HOH . R 4 HOH F 23 2023 2023 HOH HOH . S 4 HOH G 1 2001 2001 HOH HOH . S 4 HOH G 2 2002 2002 HOH HOH . S 4 HOH G 3 2003 2003 HOH HOH . S 4 HOH G 4 2004 2004 HOH HOH . S 4 HOH G 5 2005 2005 HOH HOH . S 4 HOH G 6 2006 2006 HOH HOH . S 4 HOH G 7 2007 2007 HOH HOH . S 4 HOH G 8 2008 2008 HOH HOH . S 4 HOH G 9 2009 2009 HOH HOH . S 4 HOH G 10 2010 2010 HOH HOH . S 4 HOH G 11 2011 2011 HOH HOH . S 4 HOH G 12 2012 2012 HOH HOH . S 4 HOH G 13 2013 2013 HOH HOH . S 4 HOH G 14 2014 2014 HOH HOH . S 4 HOH G 15 2015 2015 HOH HOH . S 4 HOH G 16 2016 2016 HOH HOH . S 4 HOH G 17 2017 2017 HOH HOH . S 4 HOH G 18 2018 2018 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . M 2 -16.541 14.474 110.973 0.69 87.88 ? PG ANP 701 G 1 HETATM 2 O O1G ANP . . . M 2 -15.312 14.341 111.813 0.69 87.3 ? O1G ANP 701 G 1 HETATM 3 O O2G ANP . . . M 2 -17.619 15.192 111.765 0.69 87.36 ? O2G ANP 701 G 1 HETATM 4 O O3G ANP . . . M 2 -17.045 13.172 110.478 0.69 83.71 ? O3G ANP 701 G 1 HETATM 5 P PB ANP . . . M 2 -16.973 15.994 108.418 0.69 88.51 ? PB ANP 701 G 1 HETATM 6 O O1B ANP . . . M 2 -17.868 17.032 108.891 0.69 86.69 ? O1B ANP 701 G 1 HETATM 7 O O2B ANP . . . M 2 -16.106 16.318 107.243 0.69 87.62 ? O2B ANP 701 G 1 HETATM 8 N N3B ANP . . . M 2 -15.973 15.494 109.677 0.69 88.21 ? N3B ANP 701 G 1 HETATM 9 P PA ANP . . . M 2 -17.44 13.393 107.301 0.69 85.48 ? PA ANP 701 G 1 HETATM 10 O O1A ANP . . . M 2 -17.284 13.718 105.884 0.69 84.9 ? O1A ANP 701 G 1 HETATM 11 O O2A ANP . . . M 2 -16.284 12.741 108.04 0.69 86.68 ? O2A ANP 701 G 1 HETATM 12 O O3A ANP . . . M 2 -17.827 14.644 108.118 0.69 85.63 ? O3A ANP 701 G 1 HETATM 13 O O5' ANP . . . M 2 -18.667 12.515 107.439 0.69 86.78 ? O5' ANP 701 G 1 HETATM 14 C C5' ANP . . . M 2 -19.079 12.04 108.724 0.69 88.66 ? C5' ANP 701 G 1 HETATM 15 C C4' ANP . . . M 2 -20.109 10.994 108.595 0.69 88.68 ? C4' ANP 701 G 1 HETATM 16 O O4' ANP . . . M 2 -19.885 9.982 107.67 0.69 89 ? O4' ANP 701 G 1 HETATM 17 C C3' ANP . . . M 2 -20.38 10.294 109.955 0.69 89 ? C3' ANP 701 G 1 HETATM 18 O O3' ANP . . . M 2 -21.446 10.942 110.681 0.69 87.53 ? O3' ANP 701 G 1 HETATM 19 C C2' ANP . . . M 2 -20.729 8.848 109.561 0.69 89.62 ? C2' ANP 701 G 1 HETATM 20 O O2' ANP . . . M 2 -22.098 8.598 109.456 0.69 88.62 ? O2' ANP 701 G 1 HETATM 21 C C1' ANP . . . M 2 -20.002 8.696 108.248 0.69 91.82 ? C1' ANP 701 G 1 HETATM 22 N N9 ANP . . . M 2 -18.653 8.06 108.448 0.69 98 ? N9 ANP 701 G 1 HETATM 23 C C8 ANP . . . M 2 -17.356 8.741 108.311 0.69 99.78 ? C8 ANP 701 G 1 HETATM 24 N N7 ANP . . . M 2 -16.369 7.906 108.556 0.69 100.5 ? N7 ANP 701 G 1 HETATM 25 C C5 ANP . . . M 2 -17.039 6.614 108.872 0.69 101.56 ? C5 ANP 701 G 1 HETATM 26 C C6 ANP . . . M 2 -16.457 5.302 109.231 0.69 102.2 ? C6 ANP 701 G 1 HETATM 27 N N6 ANP . . . M 2 -15.082 4.918 109.37 0.69 99.46 ? N6 ANP 701 G 1 HETATM 28 N N1 ANP . . . M 2 -17.459 4.355 109.449 0.69 104.34 ? N1 ANP 701 G 1 HETATM 29 C C2 ANP . . . M 2 -18.787 4.721 109.319 0.69 103.81 ? C2 ANP 701 G 1 HETATM 30 N N3 ANP . . . M 2 -19.377 5.823 109.009 0.69 103.13 ? N3 ANP 701 G 1 HETATM 31 C C4 ANP . . . M 2 -18.397 6.772 108.798 0.69 101.1 ? C4 ANP 701 G 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 43 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #