data_1GL9 # _model_server_result.job_id HTuHnB6fmczp2AVf00Kqkg _model_server_result.datetime_utc '2025-01-03 05:10:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1gl9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":2055}' # _entry.id 1GL9 # _exptl.entry_id 1GL9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.7 _cell.angle_gamma 90 _cell.entry_id 1GL9 _cell.length_a 132.41 _cell.length_b 68.69 _cell.length_c 134 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1GL9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PQS monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1 B,E,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 35 B CYS 35 1_555 A SG CYS 650 B CYS 650 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 B SG CYS 35 C CYS 35 1_555 B SG CYS 650 C CYS 650 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 1GL9 _atom_sites.fract_transf_matrix[1][1] 0.007552 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001291 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014558 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007571 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ANP B 1 2055 2055 ANP ANP . D 3 MG B 1 2056 2056 MG MG . E 2 ANP C 1 2055 2055 ANP ANP . F 3 MG C 1 2056 2056 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . C 2 249.772 -8.037 -25.301 1 68.42 ? PG ANP 2055 B 1 HETATM 2 O O1G ANP . . . C 2 249.779 -9.151 -26.33 1 69.15 ? O1G ANP 2055 B 1 HETATM 3 O O2G ANP . . . C 2 248.747 -8.206 -24.195 1 77.75 ? O2G ANP 2055 B 1 HETATM 4 O O3G ANP . . . C 2 251.137 -7.634 -24.794 1 74.05 ? O3G ANP 2055 B 1 HETATM 5 P PB ANP . . . C 2 247.805 -6.067 -26.359 1 43.69 ? PB ANP 2055 B 1 HETATM 6 O O1B ANP . . . C 2 246.912 -7.259 -26.418 1 48.71 ? O1B ANP 2055 B 1 HETATM 7 O O2B ANP . . . C 2 247.32 -5.102 -25.382 1 36.74 ? O2B ANP 2055 B 1 HETATM 8 N N3B ANP . . . C 2 249.244 -6.686 -26.173 1 58.51 ? N3B ANP 2055 B 1 HETATM 9 P PA ANP . . . C 2 248.161 -4.531 -28.979 1 47.98 ? PA ANP 2055 B 1 HETATM 10 O O1A ANP . . . C 2 247.662 -3.124 -29 1 63.34 ? O1A ANP 2055 B 1 HETATM 11 O O2A ANP . . . C 2 249.675 -4.644 -28.901 1 49.5 ? O2A ANP 2055 B 1 HETATM 12 O O3A ANP . . . C 2 247.482 -5.326 -27.787 1 35.83 ? O3A ANP 2055 B 1 HETATM 13 O O5' ANP . . . C 2 247.572 -5.344 -30.222 1 32.76 ? O5' ANP 2055 B 1 HETATM 14 C C5' ANP . . . C 2 248.24 -6.576 -30.37 1 31 ? C5' ANP 2055 B 1 HETATM 15 C C4' ANP . . . C 2 247.981 -7.083 -31.797 1 30.17 ? C4' ANP 2055 B 1 HETATM 16 O O4' ANP . . . C 2 246.624 -7.438 -31.836 1 34.53 ? O4' ANP 2055 B 1 HETATM 17 C C3' ANP . . . C 2 248.055 -6.06 -32.911 1 29.21 ? C3' ANP 2055 B 1 HETATM 18 O O3' ANP . . . C 2 248.554 -6.766 -34.016 1 40.6 ? O3' ANP 2055 B 1 HETATM 19 C C2' ANP . . . C 2 246.609 -5.761 -33.253 1 29.03 ? C2' ANP 2055 B 1 HETATM 20 O O2' ANP . . . C 2 246.085 -4.565 -32.749 1 46.42 ? O2' ANP 2055 B 1 HETATM 21 C C1' ANP . . . C 2 245.78 -6.866 -32.785 1 28.44 ? C1' ANP 2055 B 1 HETATM 22 N N9 ANP . . . C 2 244.356 -6.565 -32.381 1 29.82 ? N9 ANP 2055 B 1 HETATM 23 C C8 ANP . . . C 2 243.97 -5.819 -31.318 1 32.55 ? C8 ANP 2055 B 1 HETATM 24 N N7 ANP . . . C 2 242.643 -5.794 -31.202 1 35.58 ? N7 ANP 2055 B 1 HETATM 25 C C5 ANP . . . C 2 242.18 -6.564 -32.19 1 34.39 ? C5 ANP 2055 B 1 HETATM 26 C C6 ANP . . . C 2 240.817 -6.889 -32.497 1 30.55 ? C6 ANP 2055 B 1 HETATM 27 N N6 ANP . . . C 2 239.824 -6.377 -31.723 1 24.23 ? N6 ANP 2055 B 1 HETATM 28 N N1 ANP . . . C 2 240.547 -7.721 -33.592 1 30.03 ? N1 ANP 2055 B 1 HETATM 29 C C2 ANP . . . C 2 241.63 -8.176 -34.294 1 26.38 ? C2 ANP 2055 B 1 HETATM 30 N N3 ANP . . . C 2 242.919 -7.873 -34.006 1 27.32 ? N3 ANP 2055 B 1 HETATM 31 C C4 ANP . . . C 2 243.244 -7.059 -32.953 1 31.46 ? C4 ANP 2055 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 31 #