data_1GLD # _model_server_result.job_id YgLI54tNrYpQUzTEMmwQRQ _model_server_result.datetime_utc '2024-10-10 20:27:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1gld # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 1GLD # _exptl.entry_id 1GLD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 170.058 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCERALDEHYDE-3-PHOSPHATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1GLD _cell.length_a 122.98 _cell.length_b 125.87 _cell.length_c 134.47 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1GLD _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 125.87 0 3 'crystal symmetry operation' 4_565 x,-y+1,-z 1 0 0 0 -1 0 0 0 -1 0 125.87 0 4 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C MN MN . G MN 502 1_555 D O4P G3H . G G3H 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? metalc ? metalc2 C MN MN . G MN 502 1_555 E O2B ADP . G ADP 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc3 C MN MN . G MN 502 1_555 G O HOH . G HOH 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? # _chem_comp.formula 'C3 H7 O6 P' _chem_comp.formula_weight 170.058 _chem_comp.id G3H _chem_comp.mon_nstd_flag . _chem_comp.name GLYCERALDEHYDE-3-PHOSPHATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 G3H doub 127 n n C1 C2 G3H sing 128 n n C1 H11 G3H sing 129 n n C2 O2 G3H sing 130 n n C2 C3 G3H sing 131 n n C2 H2 G3H sing 132 n n O2 HO2 G3H sing 133 n n C3 O1P G3H sing 134 n n C3 H31 G3H sing 135 n n C3 H32 G3H sing 136 n n O1P P G3H sing 137 n n O2P P G3H doub 138 n n O3P P G3H sing 139 n n O3P HOP3 G3H sing 140 n n O4P P G3H sing 141 n n O4P HOP4 G3H sing 142 n n # _atom_sites.entry_id 1GLD _atom_sites.fract_transf_matrix[1][1] 0.008131 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007945 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007437 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MN G 1 502 3 MN MN . D 4 G3H G 1 503 1 G3H G3P . E 5 ADP G 1 504 2 ADP ADP . F 6 HOH F 1 169 21 HOH HOH . F 6 HOH F 2 170 22 HOH HOH . G 6 HOH G 1 505 52 HOH HOH . G 6 HOH G 2 506 54 HOH HOH . G 6 HOH G 3 507 55 HOH HOH . G 6 HOH G 4 508 4 HOH HOH . G 6 HOH G 5 509 5 HOH HOH . G 6 HOH G 6 510 2 HOH HOH . G 6 HOH G 7 511 56 HOH HOH . G 6 HOH G 8 512 13 HOH HOH . G 6 HOH G 9 513 14 HOH HOH . G 6 HOH G 10 514 16 HOH HOH . G 6 HOH G 11 515 17 HOH HOH . G 6 HOH G 12 516 23 HOH HOH . G 6 HOH G 13 517 40 HOH HOH . G 6 HOH G 14 518 48 HOH HOH . G 6 HOH G 15 519 50 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 G3H . . . D 4 23.631 41.754 9.933 1 5.47 ? O1 G3H 503 G 1 HETATM 2 C C1 G3H . . . D 4 24.348 42.94 9.808 1 5 ? C1 G3H 503 G 1 HETATM 3 C C2 G3H . . . D 4 23.829 43.837 10.894 1 9.72 ? C2 G3H 503 G 1 HETATM 4 O O2 G3H . . . D 4 24.929 44.175 11.7 1 41.38 ? O2 G3H 503 G 1 HETATM 5 C C3 G3H . . . D 4 23.05 45.069 10.333 1 5 ? C3 G3H 503 G 1 HETATM 6 O O1P G3H . . . D 4 23.288 46.164 11.205 1 24.41 ? O1P G3H 503 G 1 HETATM 7 O O2P G3H . . . D 4 22.842 48.189 9.738 1 20.85 ? O2P G3H 503 G 1 HETATM 8 O O3P G3H . . . D 4 21.1 47.471 11.411 1 53.71 ? O3P G3H 503 G 1 HETATM 9 O O4P G3H . . . D 4 23.162 48.518 12.148 1 36.52 ? O4P G3H 503 G 1 HETATM 10 P P G3H . . . D 4 22.568 47.608 11.111 1 75 ? P G3H 503 G 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 10 #