data_1GLE
#
_model_server_result.job_id            oTiXKh5CLMIkuiNXhwAZgQ 
_model_server_result.datetime_utc      '2025-03-06 08:04:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1gle 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":504}' 
#
_entry.id    1GLE 
#
_exptl.entry_id    1GLE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1GLE 
_cell.length_a            124.03 
_cell.length_b            125.11 
_cell.length_c            133.33 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1GLE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS octameric 8 author_and_software_defined_assembly 1 
PISA tetrameric 4 software_defined_assembly 2 
PISA tetrameric 4 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H 1 1,2,3,4 
A,B,C,D,E,F,G,H 2 1,3 
B,D,E,F,H 3 1,3 
A,C,G 3 5,6 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 125.11 0 
3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
4 'crystal symmetry operation' 4_565 x,-y+1,-z 1 0 0 0 -1 0 0 0 -1 0 125.11 0 
5 'crystal symmetry operation' 6_454 -x-1/2,-y+1/2,z-1/2 -1 0 0 0 -1 0 0 0 1 -62.015 62.555 -66.665 
6 'crystal symmetry operation' 8_555 x+1/2,-y+1/2,-z+1/2 1 0 0 0 -1 0 0 0 -1 62.015 62.555 66.665 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 75 F HIS 75 1_555 C ZN ZN . F ZN 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? 
metalc ? metalc2 A NE2 HIS 90 F HIS 90 1_555 C ZN ZN . F ZN 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? 
metalc ? metalc3 C ZN ZN . F ZN 169 1_555 G O HOH . F HOH 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
metalc ? metalc4 C ZN ZN . F ZN 169 1_555 B OE2 GLU 478 G GLU 478 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.927 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     1GLE 
_atom_sites.fract_transf_matrix[1][1]    0.008063 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007993 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.0075 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 ZN F 1 169 4 ZN ZN . 
D 3 ZN G 1 502 3 ZN ZN . 
E 4 G3H G 1 503 1 G3H G3P . 
F 5 ADP G 1 504 2 ADP ADP . 
G 6 HOH F 1 170 8 HOH HOH . 
G 6 HOH F 2 171 20 HOH HOH . 
G 6 HOH F 3 172 21 HOH HOH . 
G 6 HOH F 4 173 22 HOH HOH . 
G 6 HOH F 5 174 27 HOH HOH . 
G 6 HOH F 6 175 1 HOH HOH . 
G 6 HOH F 7 176 42 HOH HOH . 
H 6 HOH G 1 505 52 HOH HOH . 
H 6 HOH G 2 506 53 HOH HOH . 
H 6 HOH G 3 507 3 HOH HOH . 
H 6 HOH G 4 508 4 HOH HOH . 
H 6 HOH G 5 509 5 HOH HOH . 
H 6 HOH G 6 510 6 HOH HOH . 
H 6 HOH G 7 511 7 HOH HOH . 
H 6 HOH G 8 512 9 HOH HOH . 
H 6 HOH G 9 513 10 HOH HOH . 
H 6 HOH G 10 514 11 HOH HOH . 
H 6 HOH G 11 515 12 HOH HOH . 
H 6 HOH G 12 516 13 HOH HOH . 
H 6 HOH G 13 517 14 HOH HOH . 
H 6 HOH G 14 518 15 HOH HOH . 
H 6 HOH G 15 519 16 HOH HOH . 
H 6 HOH G 16 520 17 HOH HOH . 
H 6 HOH G 17 521 19 HOH HOH . 
H 6 HOH G 18 522 23 HOH HOH . 
H 6 HOH G 19 523 24 HOH HOH . 
H 6 HOH G 20 524 25 HOH HOH . 
H 6 HOH G 21 525 26 HOH HOH . 
H 6 HOH G 22 526 28 HOH HOH . 
H 6 HOH G 23 527 29 HOH HOH . 
H 6 HOH G 24 528 30 HOH HOH . 
H 6 HOH G 25 529 32 HOH HOH . 
H 6 HOH G 26 530 33 HOH HOH . 
H 6 HOH G 27 531 34 HOH HOH . 
H 6 HOH G 28 532 35 HOH HOH . 
H 6 HOH G 29 533 36 HOH HOH . 
H 6 HOH G 30 534 37 HOH HOH . 
H 6 HOH G 31 535 38 HOH HOH . 
H 6 HOH G 32 536 39 HOH HOH . 
H 6 HOH G 33 537 40 HOH HOH . 
H 6 HOH G 34 538 41 HOH HOH . 
H 6 HOH G 35 539 43 HOH HOH . 
H 6 HOH G 36 540 44 HOH HOH . 
H 6 HOH G 37 541 46 HOH HOH . 
H 6 HOH G 38 542 48 HOH HOH . 
H 6 HOH G 39 543 49 HOH HOH . 
H 6 HOH G 40 544 50 HOH HOH . 
H 6 HOH G 41 545 51 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . F 5 20.587 51.065 11.62 1 75 ? PB ADP 504 G 1 
HETATM 2 O O1B ADP . . . F 5 19.637 50.332 10.716 1 54.67 ? O1B ADP 504 G 1 
HETATM 3 O O2B ADP . . . F 5 21.168 50.101 12.638 1 40.54 ? O2B ADP 504 G 1 
HETATM 4 O O3B ADP . . . F 5 21.667 51.639 10.752 1 75 ? O3B ADP 504 G 1 
HETATM 5 P PA ADP . . . F 5 19.304 52.249 13.871 1 54.77 ? PA ADP 504 G 1 
HETATM 6 O O1A ADP . . . F 5 19.619 53.709 14.009 1 75 ? O1A ADP 504 G 1 
HETATM 7 O O2A ADP . . . F 5 19.515 51.337 15.053 1 70.16 ? O2A ADP 504 G 1 
HETATM 8 O O3A ADP . . . F 5 19.82 52.356 12.314 1 75 ? O3A ADP 504 G 1 
HETATM 9 O O5' ADP . . . F 5 17.769 52.202 13.415 1 75 ? O5' ADP 504 G 1 
HETATM 10 C C5' ADP . . . F 5 17.124 53.243 12.605 1 61.74 ? C5' ADP 504 G 1 
HETATM 11 C C4' ADP . . . F 5 15.785 52.667 12.147 1 5 ? C4' ADP 504 G 1 
HETATM 12 O O4' ADP . . . F 5 14.743 53.025 13.062 1 73.77 ? O4' ADP 504 G 1 
HETATM 13 C C3' ADP . . . F 5 15.312 52.918 10.738 1 75 ? C3' ADP 504 G 1 
HETATM 14 O O3' ADP . . . F 5 15.182 51.637 10.046 1 51.34 ? O3' ADP 504 G 1 
HETATM 15 C C2' ADP . . . F 5 13.996 53.706 10.94 1 5 ? C2' ADP 504 G 1 
HETATM 16 O O2' ADP . . . F 5 13.335 53.493 9.679 1 46.42 ? O2' ADP 504 G 1 
HETATM 17 C C1' ADP . . . F 5 13.597 53.398 12.373 1 18.53 ? C1' ADP 504 G 1 
HETATM 18 N N9 ADP . . . F 5 13.01 54.474 13.164 1 15.61 ? N9 ADP 504 G 1 
HETATM 19 C C8 ADP . . . F 5 13.346 55.634 13.773 1 13.66 ? C8 ADP 504 G 1 
HETATM 20 N N7 ADP . . . F 5 12.401 56.121 14.543 1 75 ? N7 ADP 504 G 1 
HETATM 21 C C5 ADP . . . F 5 11.364 55.201 14.437 1 5 ? C5 ADP 504 G 1 
HETATM 22 C C6 ADP . . . F 5 10.063 55.123 15.027 1 6.06 ? C6 ADP 504 G 1 
HETATM 23 N N6 ADP . . . F 5 9.501 56.076 15.809 1 41.8 ? N6 ADP 504 G 1 
HETATM 24 N N1 ADP . . . F 5 9.323 54.035 14.732 1 35.72 ? N1 ADP 504 G 1 
HETATM 25 C C2 ADP . . . F 5 9.804 53.144 13.844 1 8.67 ? C2 ADP 504 G 1 
HETATM 26 N N3 ADP . . . F 5 11.002 53.085 13.287 1 27.78 ? N3 ADP 504 G 1 
HETATM 27 C C4 ADP . . . F 5 11.754 54.146 13.64 1 27.77 ? C4 ADP 504 G 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           345 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#