data_1GLF # _model_server_result.job_id 1wbanYzylqZGsLWhL-ogOA _model_server_result.datetime_utc '2024-10-13 04:20:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1glf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":608}' # _entry.id 1GLF # _exptl.entry_id 1GLF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.1 _cell.angle_gamma 90 _cell.entry_id 1GLF _cell.length_a 92.1 _cell.length_b 117.4 _cell.length_c 108.4 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1GLF _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 I N N ? 3 K N N ? 3 M N N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 1GLF _atom_sites.fract_transf_matrix[1][1] 0.010858 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000588 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008518 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009239 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 PO4 O 1 601 601 PO4 PO4 . F 3 ADP O 1 607 607 ADP ADP . G 4 GOL O 1 603 603 GOL GOL . H 2 PO4 Y 1 602 602 PO4 PO4 . I 3 ADP Y 1 608 608 ADP ADP . J 4 GOL Y 1 604 604 GOL GOL . K 3 ADP Z 1 609 609 ADP ADP . L 4 GOL Z 1 605 605 GOL GOL . M 3 ADP X 1 610 610 ADP ADP . N 4 GOL X 1 606 606 GOL GOL . O 5 HOH O 1 608 1 HOH HOH . O 5 HOH O 2 609 2 HOH HOH . O 5 HOH O 3 610 3 HOH HOH . O 5 HOH O 4 611 4 HOH HOH . O 5 HOH O 5 612 5 HOH HOH . O 5 HOH O 6 613 6 HOH HOH . O 5 HOH O 7 614 7 HOH HOH . O 5 HOH O 8 615 8 HOH HOH . O 5 HOH O 9 616 9 HOH HOH . O 5 HOH O 10 617 10 HOH HOH . O 5 HOH O 11 618 11 HOH HOH . O 5 HOH O 12 619 12 HOH HOH . O 5 HOH O 13 620 13 HOH HOH . O 5 HOH O 14 621 14 HOH HOH . O 5 HOH O 15 622 15 HOH HOH . O 5 HOH O 16 623 16 HOH HOH . O 5 HOH O 17 624 79 HOH HOH . O 5 HOH O 18 625 83 HOH HOH . O 5 HOH O 19 626 86 HOH HOH . O 5 HOH O 20 627 88 HOH HOH . O 5 HOH O 21 628 97 HOH HOH . O 5 HOH O 22 629 103 HOH HOH . O 5 HOH O 23 630 112 HOH HOH . O 5 HOH O 24 631 114 HOH HOH . O 5 HOH O 25 632 118 HOH HOH . O 5 HOH O 26 633 128 HOH HOH . O 5 HOH O 27 634 129 HOH HOH . O 5 HOH O 28 635 135 HOH HOH . O 5 HOH O 29 636 141 HOH HOH . O 5 HOH O 30 637 143 HOH HOH . O 5 HOH O 31 638 148 HOH HOH . O 5 HOH O 32 639 155 HOH HOH . O 5 HOH O 33 640 156 HOH HOH . O 5 HOH O 34 641 158 HOH HOH . O 5 HOH O 35 642 160 HOH HOH . O 5 HOH O 36 643 161 HOH HOH . O 5 HOH O 37 644 162 HOH HOH . O 5 HOH O 38 645 165 HOH HOH . O 5 HOH O 39 646 170 HOH HOH . O 5 HOH O 40 647 171 HOH HOH . O 5 HOH O 41 648 177 HOH HOH . O 5 HOH O 42 649 178 HOH HOH . O 5 HOH O 43 650 180 HOH HOH . O 5 HOH O 44 651 181 HOH HOH . O 5 HOH O 45 652 194 HOH HOH . O 5 HOH O 46 653 198 HOH HOH . P 5 HOH Y 1 609 17 HOH HOH . P 5 HOH Y 2 610 18 HOH HOH . P 5 HOH Y 3 611 19 HOH HOH . P 5 HOH Y 4 612 20 HOH HOH . P 5 HOH Y 5 613 21 HOH HOH . P 5 HOH Y 6 614 22 HOH HOH . P 5 HOH Y 7 615 23 HOH HOH . P 5 HOH Y 8 616 24 HOH HOH . P 5 HOH Y 9 617 25 HOH HOH . P 5 HOH Y 10 618 26 HOH HOH . P 5 HOH Y 11 619 27 HOH HOH . P 5 HOH Y 12 620 28 HOH HOH . P 5 HOH Y 13 621 29 HOH HOH . P 5 HOH Y 14 622 30 HOH HOH . P 5 HOH Y 15 623 31 HOH HOH . P 5 HOH Y 16 624 76 HOH HOH . P 5 HOH Y 17 625 78 HOH HOH . P 5 HOH Y 18 626 82 HOH HOH . P 5 HOH Y 19 627 84 HOH HOH . P 5 HOH Y 20 628 91 HOH HOH . P 5 HOH Y 21 629 92 HOH HOH . P 5 HOH Y 22 630 94 HOH HOH . P 5 HOH Y 23 631 98 HOH HOH . P 5 HOH Y 24 632 100 HOH HOH . P 5 HOH Y 25 633 106 HOH HOH . P 5 HOH Y 26 634 108 HOH HOH . P 5 HOH Y 27 635 109 HOH HOH . P 5 HOH Y 28 636 113 HOH HOH . P 5 HOH Y 29 637 115 HOH HOH . P 5 HOH Y 30 638 117 HOH HOH . P 5 HOH Y 31 639 121 HOH HOH . P 5 HOH Y 32 640 123 HOH HOH . P 5 HOH Y 33 641 133 HOH HOH . P 5 HOH Y 34 642 137 HOH HOH . P 5 HOH Y 35 643 140 HOH HOH . P 5 HOH Y 36 644 144 HOH HOH . P 5 HOH Y 37 645 145 HOH HOH . P 5 HOH Y 38 646 147 HOH HOH . P 5 HOH Y 39 647 149 HOH HOH . P 5 HOH Y 40 648 151 HOH HOH . P 5 HOH Y 41 649 153 HOH HOH . P 5 HOH Y 42 650 169 HOH HOH . P 5 HOH Y 43 651 176 HOH HOH . P 5 HOH Y 44 652 179 HOH HOH . P 5 HOH Y 45 653 184 HOH HOH . P 5 HOH Y 46 654 187 HOH HOH . P 5 HOH Y 47 655 189 HOH HOH . P 5 HOH Y 48 656 195 HOH HOH . P 5 HOH Y 49 657 196 HOH HOH . P 5 HOH Y 50 658 199 HOH HOH . P 5 HOH Y 51 659 200 HOH HOH . Q 5 HOH Z 1 610 32 HOH HOH . Q 5 HOH Z 2 611 33 HOH HOH . Q 5 HOH Z 3 612 34 HOH HOH . Q 5 HOH Z 4 613 35 HOH HOH . Q 5 HOH Z 5 614 36 HOH HOH . Q 5 HOH Z 6 615 37 HOH HOH . Q 5 HOH Z 7 616 38 HOH HOH . Q 5 HOH Z 8 617 40 HOH HOH . Q 5 HOH Z 9 618 41 HOH HOH . Q 5 HOH Z 10 619 42 HOH HOH . Q 5 HOH Z 11 620 43 HOH HOH . Q 5 HOH Z 12 621 44 HOH HOH . Q 5 HOH Z 13 622 45 HOH HOH . Q 5 HOH Z 14 623 46 HOH HOH . Q 5 HOH Z 15 624 47 HOH HOH . Q 5 HOH Z 16 625 48 HOH HOH . Q 5 HOH Z 17 626 49 HOH HOH . Q 5 HOH Z 18 627 50 HOH HOH . Q 5 HOH Z 19 628 51 HOH HOH . Q 5 HOH Z 20 629 52 HOH HOH . Q 5 HOH Z 21 630 53 HOH HOH . Q 5 HOH Z 22 631 54 HOH HOH . Q 5 HOH Z 23 632 81 HOH HOH . Q 5 HOH Z 24 633 89 HOH HOH . Q 5 HOH Z 25 634 90 HOH HOH . Q 5 HOH Z 26 635 93 HOH HOH . Q 5 HOH Z 27 636 95 HOH HOH . Q 5 HOH Z 28 637 96 HOH HOH . Q 5 HOH Z 29 638 101 HOH HOH . Q 5 HOH Z 30 639 102 HOH HOH . Q 5 HOH Z 31 640 105 HOH HOH . Q 5 HOH Z 32 641 110 HOH HOH . Q 5 HOH Z 33 642 111 HOH HOH . Q 5 HOH Z 34 643 120 HOH HOH . Q 5 HOH Z 35 644 122 HOH HOH . Q 5 HOH Z 36 645 124 HOH HOH . Q 5 HOH Z 37 646 127 HOH HOH . Q 5 HOH Z 38 647 130 HOH HOH . Q 5 HOH Z 39 648 132 HOH HOH . Q 5 HOH Z 40 649 138 HOH HOH . Q 5 HOH Z 41 650 139 HOH HOH . Q 5 HOH Z 42 651 154 HOH HOH . Q 5 HOH Z 43 652 163 HOH HOH . Q 5 HOH Z 44 653 164 HOH HOH . Q 5 HOH Z 45 654 166 HOH HOH . Q 5 HOH Z 46 655 167 HOH HOH . Q 5 HOH Z 47 656 168 HOH HOH . Q 5 HOH Z 48 657 172 HOH HOH . Q 5 HOH Z 49 658 174 HOH HOH . Q 5 HOH Z 50 659 185 HOH HOH . Q 5 HOH Z 51 660 186 HOH HOH . Q 5 HOH Z 52 661 188 HOH HOH . Q 5 HOH Z 53 662 190 HOH HOH . R 5 HOH X 1 611 39 HOH HOH . R 5 HOH X 2 612 55 HOH HOH . R 5 HOH X 3 613 56 HOH HOH . R 5 HOH X 4 614 57 HOH HOH . R 5 HOH X 5 615 58 HOH HOH . R 5 HOH X 6 616 59 HOH HOH . R 5 HOH X 7 617 60 HOH HOH . R 5 HOH X 8 618 61 HOH HOH . R 5 HOH X 9 619 62 HOH HOH . R 5 HOH X 10 620 63 HOH HOH . R 5 HOH X 11 621 64 HOH HOH . R 5 HOH X 12 622 65 HOH HOH . R 5 HOH X 13 623 66 HOH HOH . R 5 HOH X 14 624 67 HOH HOH . R 5 HOH X 15 625 68 HOH HOH . R 5 HOH X 16 626 69 HOH HOH . R 5 HOH X 17 627 70 HOH HOH . R 5 HOH X 18 628 71 HOH HOH . R 5 HOH X 19 629 72 HOH HOH . R 5 HOH X 20 630 73 HOH HOH . R 5 HOH X 21 631 74 HOH HOH . R 5 HOH X 22 632 75 HOH HOH . R 5 HOH X 23 633 77 HOH HOH . R 5 HOH X 24 634 80 HOH HOH . R 5 HOH X 25 635 85 HOH HOH . R 5 HOH X 26 636 87 HOH HOH . R 5 HOH X 27 637 99 HOH HOH . R 5 HOH X 28 638 104 HOH HOH . R 5 HOH X 29 639 107 HOH HOH . R 5 HOH X 30 640 116 HOH HOH . R 5 HOH X 31 641 119 HOH HOH . R 5 HOH X 32 642 125 HOH HOH . R 5 HOH X 33 643 126 HOH HOH . R 5 HOH X 34 644 131 HOH HOH . R 5 HOH X 35 645 134 HOH HOH . R 5 HOH X 36 646 136 HOH HOH . R 5 HOH X 37 647 142 HOH HOH . R 5 HOH X 38 648 146 HOH HOH . R 5 HOH X 39 649 150 HOH HOH . R 5 HOH X 40 650 152 HOH HOH . R 5 HOH X 41 651 157 HOH HOH . R 5 HOH X 42 652 159 HOH HOH . R 5 HOH X 43 653 173 HOH HOH . R 5 HOH X 44 654 175 HOH HOH . R 5 HOH X 45 655 182 HOH HOH . R 5 HOH X 46 656 183 HOH HOH . R 5 HOH X 47 657 191 HOH HOH . R 5 HOH X 48 658 192 HOH HOH . R 5 HOH X 49 659 193 HOH HOH . R 5 HOH X 50 660 197 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . I 3 -3.172 -8.759 -4.192 1 55.89 ? PB ADP 608 Y 1 HETATM 2 O O1B ADP . . . I 3 -3.61 -7.74 -3.201 1 75 ? O1B ADP 608 Y 1 HETATM 3 O O2B ADP . . . I 3 -4.189 -9.853 -4.313 1 5 ? O2B ADP 608 Y 1 HETATM 4 O O3B ADP . . . I 3 -3.059 -8.062 -5.498 1 72.88 ? O3B ADP 608 Y 1 HETATM 5 P PA ADP . . . I 3 -1.597 -10.945 -3.421 1 27.17 ? PA ADP 608 Y 1 HETATM 6 O O1A ADP . . . I 3 -0.164 -10.927 -3.961 1 46.27 ? O1A ADP 608 Y 1 HETATM 7 O O2A ADP . . . I 3 -2.275 -12.277 -3.394 1 21.09 ? O2A ADP 608 Y 1 HETATM 8 O O3A ADP . . . I 3 -1.696 -9.33 -3.742 1 65.12 ? O3A ADP 608 Y 1 HETATM 9 O O5' ADP . . . I 3 -1.612 -10.365 -1.912 1 34.07 ? O5' ADP 608 Y 1 HETATM 10 C C5' ADP . . . I 3 -0.412 -9.906 -1.225 1 9.25 ? C5' ADP 608 Y 1 HETATM 11 C C4' ADP . . . I 3 -0.584 -9.835 0.297 1 44.36 ? C4' ADP 608 Y 1 HETATM 12 O O4' ADP . . . I 3 -0.144 -11.033 1.049 1 24.42 ? O4' ADP 608 Y 1 HETATM 13 C C3' ADP . . . I 3 0.186 -8.67 0.848 1 61.23 ? C3' ADP 608 Y 1 HETATM 14 O O3' ADP . . . I 3 -0.763 -7.831 1.458 1 18.69 ? O3' ADP 608 Y 1 HETATM 15 C C2' ADP . . . I 3 1.272 -9.252 1.782 1 15.16 ? C2' ADP 608 Y 1 HETATM 16 O O2' ADP . . . I 3 1.171 -8.327 2.844 1 36.45 ? O2' ADP 608 Y 1 HETATM 17 C C1' ADP . . . I 3 0.862 -10.695 2.038 1 19.75 ? C1' ADP 608 Y 1 HETATM 18 N N9 ADP . . . I 3 1.997 -11.656 2.079 1 18.47 ? N9 ADP 608 Y 1 HETATM 19 C C8 ADP . . . I 3 2.996 -12.285 1.376 1 59.11 ? C8 ADP 608 Y 1 HETATM 20 N N7 ADP . . . I 3 3.698 -13.19 2.055 1 27.5 ? N7 ADP 608 Y 1 HETATM 21 C C5 ADP . . . I 3 3.115 -13.168 3.275 1 21.62 ? C5 ADP 608 Y 1 HETATM 22 C C6 ADP . . . I 3 3.438 -13.896 4.438 1 75 ? C6 ADP 608 Y 1 HETATM 23 N N6 ADP . . . I 3 4.432 -14.798 4.515 1 24.59 ? N6 ADP 608 Y 1 HETATM 24 N N1 ADP . . . I 3 2.676 -13.663 5.515 1 9.19 ? N1 ADP 608 Y 1 HETATM 25 C C2 ADP . . . I 3 1.667 -12.751 5.413 1 75 ? C2 ADP 608 Y 1 HETATM 26 N N3 ADP . . . I 3 1.246 -11.99 4.376 1 9.21 ? N3 ADP 608 Y 1 HETATM 27 C C4 ADP . . . I 3 2.065 -12.235 3.334 1 63.18 ? C4 ADP 608 Y 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 27 #