data_1GLF
#
_model_server_result.job_id            BBftYQUhxRADXj18YzO9ng 
_model_server_result.datetime_utc      '2024-12-24 00:12:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1glf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":609}' 
#
_entry.id    1GLF 
#
_exptl.entry_id    1GLF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          93.1 
_cell.angle_gamma         90 
_cell.entry_id            1GLF 
_cell.length_a            92.1 
_cell.length_b            117.4 
_cell.length_c            108.4 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1GLF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 I N N 
? 3 K N N 
? 3 M N N 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     1GLF 
_atom_sites.fract_transf_matrix[1][1]    0.010858 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000588 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008518 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009239 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 PO4 O 1 601 601 PO4 PO4 . 
F 3 ADP O 1 607 607 ADP ADP . 
G 4 GOL O 1 603 603 GOL GOL . 
H 2 PO4 Y 1 602 602 PO4 PO4 . 
I 3 ADP Y 1 608 608 ADP ADP . 
J 4 GOL Y 1 604 604 GOL GOL . 
K 3 ADP Z 1 609 609 ADP ADP . 
L 4 GOL Z 1 605 605 GOL GOL . 
M 3 ADP X 1 610 610 ADP ADP . 
N 4 GOL X 1 606 606 GOL GOL . 
O 5 HOH O 1 608 1 HOH HOH . 
O 5 HOH O 2 609 2 HOH HOH . 
O 5 HOH O 3 610 3 HOH HOH . 
O 5 HOH O 4 611 4 HOH HOH . 
O 5 HOH O 5 612 5 HOH HOH . 
O 5 HOH O 6 613 6 HOH HOH . 
O 5 HOH O 7 614 7 HOH HOH . 
O 5 HOH O 8 615 8 HOH HOH . 
O 5 HOH O 9 616 9 HOH HOH . 
O 5 HOH O 10 617 10 HOH HOH . 
O 5 HOH O 11 618 11 HOH HOH . 
O 5 HOH O 12 619 12 HOH HOH . 
O 5 HOH O 13 620 13 HOH HOH . 
O 5 HOH O 14 621 14 HOH HOH . 
O 5 HOH O 15 622 15 HOH HOH . 
O 5 HOH O 16 623 16 HOH HOH . 
O 5 HOH O 17 624 79 HOH HOH . 
O 5 HOH O 18 625 83 HOH HOH . 
O 5 HOH O 19 626 86 HOH HOH . 
O 5 HOH O 20 627 88 HOH HOH . 
O 5 HOH O 21 628 97 HOH HOH . 
O 5 HOH O 22 629 103 HOH HOH . 
O 5 HOH O 23 630 112 HOH HOH . 
O 5 HOH O 24 631 114 HOH HOH . 
O 5 HOH O 25 632 118 HOH HOH . 
O 5 HOH O 26 633 128 HOH HOH . 
O 5 HOH O 27 634 129 HOH HOH . 
O 5 HOH O 28 635 135 HOH HOH . 
O 5 HOH O 29 636 141 HOH HOH . 
O 5 HOH O 30 637 143 HOH HOH . 
O 5 HOH O 31 638 148 HOH HOH . 
O 5 HOH O 32 639 155 HOH HOH . 
O 5 HOH O 33 640 156 HOH HOH . 
O 5 HOH O 34 641 158 HOH HOH . 
O 5 HOH O 35 642 160 HOH HOH . 
O 5 HOH O 36 643 161 HOH HOH . 
O 5 HOH O 37 644 162 HOH HOH . 
O 5 HOH O 38 645 165 HOH HOH . 
O 5 HOH O 39 646 170 HOH HOH . 
O 5 HOH O 40 647 171 HOH HOH . 
O 5 HOH O 41 648 177 HOH HOH . 
O 5 HOH O 42 649 178 HOH HOH . 
O 5 HOH O 43 650 180 HOH HOH . 
O 5 HOH O 44 651 181 HOH HOH . 
O 5 HOH O 45 652 194 HOH HOH . 
O 5 HOH O 46 653 198 HOH HOH . 
P 5 HOH Y 1 609 17 HOH HOH . 
P 5 HOH Y 2 610 18 HOH HOH . 
P 5 HOH Y 3 611 19 HOH HOH . 
P 5 HOH Y 4 612 20 HOH HOH . 
P 5 HOH Y 5 613 21 HOH HOH . 
P 5 HOH Y 6 614 22 HOH HOH . 
P 5 HOH Y 7 615 23 HOH HOH . 
P 5 HOH Y 8 616 24 HOH HOH . 
P 5 HOH Y 9 617 25 HOH HOH . 
P 5 HOH Y 10 618 26 HOH HOH . 
P 5 HOH Y 11 619 27 HOH HOH . 
P 5 HOH Y 12 620 28 HOH HOH . 
P 5 HOH Y 13 621 29 HOH HOH . 
P 5 HOH Y 14 622 30 HOH HOH . 
P 5 HOH Y 15 623 31 HOH HOH . 
P 5 HOH Y 16 624 76 HOH HOH . 
P 5 HOH Y 17 625 78 HOH HOH . 
P 5 HOH Y 18 626 82 HOH HOH . 
P 5 HOH Y 19 627 84 HOH HOH . 
P 5 HOH Y 20 628 91 HOH HOH . 
P 5 HOH Y 21 629 92 HOH HOH . 
P 5 HOH Y 22 630 94 HOH HOH . 
P 5 HOH Y 23 631 98 HOH HOH . 
P 5 HOH Y 24 632 100 HOH HOH . 
P 5 HOH Y 25 633 106 HOH HOH . 
P 5 HOH Y 26 634 108 HOH HOH . 
P 5 HOH Y 27 635 109 HOH HOH . 
P 5 HOH Y 28 636 113 HOH HOH . 
P 5 HOH Y 29 637 115 HOH HOH . 
P 5 HOH Y 30 638 117 HOH HOH . 
P 5 HOH Y 31 639 121 HOH HOH . 
P 5 HOH Y 32 640 123 HOH HOH . 
P 5 HOH Y 33 641 133 HOH HOH . 
P 5 HOH Y 34 642 137 HOH HOH . 
P 5 HOH Y 35 643 140 HOH HOH . 
P 5 HOH Y 36 644 144 HOH HOH . 
P 5 HOH Y 37 645 145 HOH HOH . 
P 5 HOH Y 38 646 147 HOH HOH . 
P 5 HOH Y 39 647 149 HOH HOH . 
P 5 HOH Y 40 648 151 HOH HOH . 
P 5 HOH Y 41 649 153 HOH HOH . 
P 5 HOH Y 42 650 169 HOH HOH . 
P 5 HOH Y 43 651 176 HOH HOH . 
P 5 HOH Y 44 652 179 HOH HOH . 
P 5 HOH Y 45 653 184 HOH HOH . 
P 5 HOH Y 46 654 187 HOH HOH . 
P 5 HOH Y 47 655 189 HOH HOH . 
P 5 HOH Y 48 656 195 HOH HOH . 
P 5 HOH Y 49 657 196 HOH HOH . 
P 5 HOH Y 50 658 199 HOH HOH . 
P 5 HOH Y 51 659 200 HOH HOH . 
Q 5 HOH Z 1 610 32 HOH HOH . 
Q 5 HOH Z 2 611 33 HOH HOH . 
Q 5 HOH Z 3 612 34 HOH HOH . 
Q 5 HOH Z 4 613 35 HOH HOH . 
Q 5 HOH Z 5 614 36 HOH HOH . 
Q 5 HOH Z 6 615 37 HOH HOH . 
Q 5 HOH Z 7 616 38 HOH HOH . 
Q 5 HOH Z 8 617 40 HOH HOH . 
Q 5 HOH Z 9 618 41 HOH HOH . 
Q 5 HOH Z 10 619 42 HOH HOH . 
Q 5 HOH Z 11 620 43 HOH HOH . 
Q 5 HOH Z 12 621 44 HOH HOH . 
Q 5 HOH Z 13 622 45 HOH HOH . 
Q 5 HOH Z 14 623 46 HOH HOH . 
Q 5 HOH Z 15 624 47 HOH HOH . 
Q 5 HOH Z 16 625 48 HOH HOH . 
Q 5 HOH Z 17 626 49 HOH HOH . 
Q 5 HOH Z 18 627 50 HOH HOH . 
Q 5 HOH Z 19 628 51 HOH HOH . 
Q 5 HOH Z 20 629 52 HOH HOH . 
Q 5 HOH Z 21 630 53 HOH HOH . 
Q 5 HOH Z 22 631 54 HOH HOH . 
Q 5 HOH Z 23 632 81 HOH HOH . 
Q 5 HOH Z 24 633 89 HOH HOH . 
Q 5 HOH Z 25 634 90 HOH HOH . 
Q 5 HOH Z 26 635 93 HOH HOH . 
Q 5 HOH Z 27 636 95 HOH HOH . 
Q 5 HOH Z 28 637 96 HOH HOH . 
Q 5 HOH Z 29 638 101 HOH HOH . 
Q 5 HOH Z 30 639 102 HOH HOH . 
Q 5 HOH Z 31 640 105 HOH HOH . 
Q 5 HOH Z 32 641 110 HOH HOH . 
Q 5 HOH Z 33 642 111 HOH HOH . 
Q 5 HOH Z 34 643 120 HOH HOH . 
Q 5 HOH Z 35 644 122 HOH HOH . 
Q 5 HOH Z 36 645 124 HOH HOH . 
Q 5 HOH Z 37 646 127 HOH HOH . 
Q 5 HOH Z 38 647 130 HOH HOH . 
Q 5 HOH Z 39 648 132 HOH HOH . 
Q 5 HOH Z 40 649 138 HOH HOH . 
Q 5 HOH Z 41 650 139 HOH HOH . 
Q 5 HOH Z 42 651 154 HOH HOH . 
Q 5 HOH Z 43 652 163 HOH HOH . 
Q 5 HOH Z 44 653 164 HOH HOH . 
Q 5 HOH Z 45 654 166 HOH HOH . 
Q 5 HOH Z 46 655 167 HOH HOH . 
Q 5 HOH Z 47 656 168 HOH HOH . 
Q 5 HOH Z 48 657 172 HOH HOH . 
Q 5 HOH Z 49 658 174 HOH HOH . 
Q 5 HOH Z 50 659 185 HOH HOH . 
Q 5 HOH Z 51 660 186 HOH HOH . 
Q 5 HOH Z 52 661 188 HOH HOH . 
Q 5 HOH Z 53 662 190 HOH HOH . 
R 5 HOH X 1 611 39 HOH HOH . 
R 5 HOH X 2 612 55 HOH HOH . 
R 5 HOH X 3 613 56 HOH HOH . 
R 5 HOH X 4 614 57 HOH HOH . 
R 5 HOH X 5 615 58 HOH HOH . 
R 5 HOH X 6 616 59 HOH HOH . 
R 5 HOH X 7 617 60 HOH HOH . 
R 5 HOH X 8 618 61 HOH HOH . 
R 5 HOH X 9 619 62 HOH HOH . 
R 5 HOH X 10 620 63 HOH HOH . 
R 5 HOH X 11 621 64 HOH HOH . 
R 5 HOH X 12 622 65 HOH HOH . 
R 5 HOH X 13 623 66 HOH HOH . 
R 5 HOH X 14 624 67 HOH HOH . 
R 5 HOH X 15 625 68 HOH HOH . 
R 5 HOH X 16 626 69 HOH HOH . 
R 5 HOH X 17 627 70 HOH HOH . 
R 5 HOH X 18 628 71 HOH HOH . 
R 5 HOH X 19 629 72 HOH HOH . 
R 5 HOH X 20 630 73 HOH HOH . 
R 5 HOH X 21 631 74 HOH HOH . 
R 5 HOH X 22 632 75 HOH HOH . 
R 5 HOH X 23 633 77 HOH HOH . 
R 5 HOH X 24 634 80 HOH HOH . 
R 5 HOH X 25 635 85 HOH HOH . 
R 5 HOH X 26 636 87 HOH HOH . 
R 5 HOH X 27 637 99 HOH HOH . 
R 5 HOH X 28 638 104 HOH HOH . 
R 5 HOH X 29 639 107 HOH HOH . 
R 5 HOH X 30 640 116 HOH HOH . 
R 5 HOH X 31 641 119 HOH HOH . 
R 5 HOH X 32 642 125 HOH HOH . 
R 5 HOH X 33 643 126 HOH HOH . 
R 5 HOH X 34 644 131 HOH HOH . 
R 5 HOH X 35 645 134 HOH HOH . 
R 5 HOH X 36 646 136 HOH HOH . 
R 5 HOH X 37 647 142 HOH HOH . 
R 5 HOH X 38 648 146 HOH HOH . 
R 5 HOH X 39 649 150 HOH HOH . 
R 5 HOH X 40 650 152 HOH HOH . 
R 5 HOH X 41 651 157 HOH HOH . 
R 5 HOH X 42 652 159 HOH HOH . 
R 5 HOH X 43 653 173 HOH HOH . 
R 5 HOH X 44 654 175 HOH HOH . 
R 5 HOH X 45 655 182 HOH HOH . 
R 5 HOH X 46 656 183 HOH HOH . 
R 5 HOH X 47 657 191 HOH HOH . 
R 5 HOH X 48 658 192 HOH HOH . 
R 5 HOH X 49 659 193 HOH HOH . 
R 5 HOH X 50 660 197 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . K 3 24.715 6.796 -12.826 1 36.33 ? PB ADP 609 Z 1 
HETATM 2 O O1B ADP . . . K 3 25.009 5.379 -12.963 1 5 ? O1B ADP 609 Z 1 
HETATM 3 O O2B ADP . . . K 3 26.073 7.427 -12.817 1 5 ? O2B ADP 609 Z 1 
HETATM 4 O O3B ADP . . . K 3 23.959 7.252 -14.051 1 57.77 ? O3B ADP 609 Z 1 
HETATM 5 P PA ADP . . . K 3 23.451 8.628 -10.985 1 18.06 ? PA ADP 609 Z 1 
HETATM 6 O O1A ADP . . . K 3 21.946 8.845 -11.1 1 5 ? O1A ADP 609 Z 1 
HETATM 7 O O2A ADP . . . K 3 24.335 9.725 -11.494 1 21.84 ? O2A ADP 609 Z 1 
HETATM 8 O O3A ADP . . . K 3 23.842 7.061 -11.439 1 31.62 ? O3A ADP 609 Z 1 
HETATM 9 O O5' ADP . . . K 3 23.626 8.687 -9.347 1 75 ? O5' ADP 609 Z 1 
HETATM 10 C C5' ADP . . . K 3 23.218 7.73 -8.319 1 6.86 ? C5' ADP 609 Z 1 
HETATM 11 C C4' ADP . . . K 3 24.458 7.514 -7.485 1 37.61 ? C4' ADP 609 Z 1 
HETATM 12 O O4' ADP . . . K 3 24.64 8.662 -6.618 1 38.97 ? O4' ADP 609 Z 1 
HETATM 13 C C3' ADP . . . K 3 24.407 6.297 -6.575 1 35.69 ? C3' ADP 609 Z 1 
HETATM 14 O O3' ADP . . . K 3 25.687 5.821 -6.341 1 10.92 ? O3' ADP 609 Z 1 
HETATM 15 C C2' ADP . . . K 3 23.85 6.884 -5.3 1 21.6 ? C2' ADP 609 Z 1 
HETATM 16 O O2' ADP . . . K 3 24.202 6.515 -3.951 1 31.74 ? O2' ADP 609 Z 1 
HETATM 17 C C1' ADP . . . K 3 24.599 8.199 -5.274 1 16.29 ? C1' ADP 609 Z 1 
HETATM 18 N N9 ADP . . . K 3 23.957 9.164 -4.41 1 5 ? N9 ADP 609 Z 1 
HETATM 19 C C8 ADP . . . K 3 22.665 9.403 -4.71 1 5 ? C8 ADP 609 Z 1 
HETATM 20 N N7 ADP . . . K 3 22.08 10.341 -3.967 1 30.28 ? N7 ADP 609 Z 1 
HETATM 21 C C5 ADP . . . K 3 23.078 10.717 -3.083 1 44.51 ? C5 ADP 609 Z 1 
HETATM 22 C C6 ADP . . . K 3 23.108 11.643 -2.016 1 26.8 ? C6 ADP 609 Z 1 
HETATM 23 N N6 ADP . . . K 3 22.042 12.393 -1.674 1 39.98 ? N6 ADP 609 Z 1 
HETATM 24 N N1 ADP . . . K 3 24.283 11.834 -1.373 1 30.87 ? N1 ADP 609 Z 1 
HETATM 25 C C2 ADP . . . K 3 25.332 11.111 -1.76 1 33.91 ? C2 ADP 609 Z 1 
HETATM 26 N N3 ADP . . . K 3 25.43 10.185 -2.719 1 13.17 ? N3 ADP 609 Z 1 
HETATM 27 C C4 ADP . . . K 3 24.254 10.031 -3.361 1 75 ? C4 ADP 609 Z 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           285 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           27 
#