data_1GLJ # _model_server_result.job_id 2EhfuEE-8SVuEeND3oMQhQ _model_server_result.datetime_utc '2024-12-04 09:40:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1glj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":601}' # _entry.id 1GLJ # _exptl.entry_id 1GLJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 549.156 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GAMMA-ARSONO-BETA,GAMMA-METHYLENEADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1GLJ _cell.length_a 99.668 _cell.length_b 200.699 _cell.length_c 114.733 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1GLJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D OG1 ATS . Y ATS 601 1_555 C MG MG . Y MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc2 D OB1 ATS . Y ATS 601 1_555 C MG MG . Y MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.807 ? # _chem_comp.formula 'C11 H18 As N5 O12 P2' _chem_comp.formula_weight 549.156 _chem_comp.id ATS _chem_comp.mon_nstd_flag . _chem_comp.name "GAMMA-ARSONO-BETA, GAMMA-METHYLENEADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag AS1 OG2 ATS sing 70 n n AS1 OG3 ATS sing 71 n n AS1 OG1 ATS doub 72 n n AS1 C3B ATS sing 73 n n OG2 HO2 ATS sing 74 n n OG3 HO3 ATS sing 75 n n PA O5' ATS sing 76 n n PA O11 ATS sing 77 n n PA O13 ATS sing 78 n n PA O12 ATS doub 79 n n O5' C5' ATS sing 80 n n O11 HOB ATS sing 81 n n O13 PB ATS sing 82 n n C5' C4' ATS sing 83 n n C5' "H5'1" ATS sing 84 n n C5' "H5'2" ATS sing 85 n n C4' O4' ATS sing 86 n n C4' C3' ATS sing 87 n n C4' H4' ATS sing 88 n n O4' C1' ATS sing 89 n n C2' O2' ATS sing 90 n n C2' C3' ATS sing 91 n n C2' C1' ATS sing 92 n n C2' H2' ATS sing 93 n n O2' HO2' ATS sing 94 n n C3' O3' ATS sing 95 n n C3' H3' ATS sing 96 n n O3' HO3' ATS sing 97 n n C1' N9 ATS sing 98 n n C1' H1' ATS sing 99 n n N9 C4 ATS sing 100 n y N9 C8 ATS sing 101 n y C4 N3 ATS doub 102 n y C4 C5 ATS sing 103 n y N3 C2 ATS sing 104 n y C2 N1 ATS doub 105 n y C2 H2 ATS sing 106 n n N1 C6 ATS sing 107 n y C6 N6 ATS sing 108 n n C6 C5 ATS doub 109 n y N6 HN61 ATS sing 110 n n N6 HN62 ATS sing 111 n n C5 N7 ATS sing 112 n y N7 C8 ATS doub 113 n y C8 H8 ATS sing 114 n n PB OB2 ATS doub 115 n n PB C3B ATS sing 116 n n PB OB1 ATS sing 117 n n C3B H3B1 ATS sing 118 n n C3B H3B2 ATS sing 119 n n OB1 HB1 ATS sing 120 n n # _atom_sites.entry_id 1GLJ _atom_sites.fract_transf_matrix[1][1] 0.010033 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004983 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008716 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG Y 1 602 602 MG MG . D 3 ATS Y 1 601 601 ATS ATA . E 4 GOL Y 1 600 600 GOL GOL . F 3 ATS O 1 601 601 ATS ATA . G 4 GOL O 1 600 600 GOL GOL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 AS AS1 ATS . . . D 3 46.226 55.677 14.363 1 50.42 ? AS1 ATS 601 Y 1 HETATM 2 O OG2 ATS . . . D 3 44.891 55.685 15.394 1 50.42 ? OG2 ATS 601 Y 1 HETATM 3 O OG3 ATS . . . D 3 47.653 55.413 15.317 1 50.42 ? OG3 ATS 601 Y 1 HETATM 4 O OG1 ATS . . . D 3 46.335 57.068 13.476 1 50.42 ? OG1 ATS 601 Y 1 HETATM 5 P PA ATS . . . D 3 49.716 53.098 11.83 1 50.42 ? PA ATS 601 Y 1 HETATM 6 O O5' ATS . . . D 3 50.239 51.595 11.871 1 50.42 ? O5' ATS 601 Y 1 HETATM 7 O O11 ATS . . . D 3 50.365 53.963 12.873 1 50.42 ? O11 ATS 601 Y 1 HETATM 8 O O13 ATS . . . D 3 48.153 53.04 12.166 1 50.42 ? O13 ATS 601 Y 1 HETATM 9 O O12 ATS . . . D 3 50.026 53.566 10.441 1 50.42 ? O12 ATS 601 Y 1 HETATM 10 C C5' ATS . . . D 3 49.886 50.784 13.021 1 50.42 ? C5' ATS 601 Y 1 HETATM 11 C C4' ATS . . . D 3 48.796 49.763 12.773 1 50.42 ? C4' ATS 601 Y 1 HETATM 12 O O4' ATS . . . D 3 49.387 48.608 12.154 1 50.42 ? O4' ATS 601 Y 1 HETATM 13 C C2' ATS . . . D 3 48.903 48.022 14.37 1 50.42 ? C2' ATS 601 Y 1 HETATM 14 O O2' ATS . . . D 3 47.992 47.121 14.86 1 50.42 ? O2' ATS 601 Y 1 HETATM 15 C C3' ATS . . . D 3 48.194 49.328 14.063 1 50.42 ? C3' ATS 601 Y 1 HETATM 16 O O3' ATS . . . D 3 46.825 49.236 13.991 1 50.42 ? O3' ATS 601 Y 1 HETATM 17 C C1' ATS . . . D 3 49.446 47.548 13.037 1 50.42 ? C1' ATS 601 Y 1 HETATM 18 N N9 ATS . . . D 3 50.756 46.874 12.94 1 50.42 ? N9 ATS 601 Y 1 HETATM 19 C C4 ATS . . . D 3 50.949 45.549 12.542 1 50.42 ? C4 ATS 601 Y 1 HETATM 20 N N3 ATS . . . D 3 49.996 44.659 12.244 1 50.42 ? N3 ATS 601 Y 1 HETATM 21 C C2 ATS . . . D 3 50.497 43.506 11.883 1 50.42 ? C2 ATS 601 Y 1 HETATM 22 N N1 ATS . . . D 3 51.752 43.121 11.808 1 50.42 ? N1 ATS 601 Y 1 HETATM 23 C C6 ATS . . . D 3 52.706 43.961 12.137 1 50.42 ? C6 ATS 601 Y 1 HETATM 24 N N6 ATS . . . D 3 53.948 43.457 12.053 1 50.42 ? N6 ATS 601 Y 1 HETATM 25 C C5 ATS . . . D 3 52.307 45.293 12.534 1 50.42 ? C5 ATS 601 Y 1 HETATM 26 N N7 ATS . . . D 3 52.992 46.448 12.937 1 50.42 ? N7 ATS 601 Y 1 HETATM 27 C C8 ATS . . . D 3 52.035 47.337 13.137 1 50.42 ? C8 ATS 601 Y 1 HETATM 28 P PB ATS . . . D 3 47.248 54.308 12.07 1 50.42 ? PB ATS 601 Y 1 HETATM 29 O OB2 ATS . . . D 3 46.615 54.433 10.693 1 50.42 ? OB2 ATS 601 Y 1 HETATM 30 C C3B ATS . . . D 3 45.94 54.221 13.155 1 50.42 ? C3B ATS 601 Y 1 HETATM 31 O OB1 ATS . . . D 3 48.086 55.556 12.346 1 50.42 ? OB1 ATS 601 Y 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 241 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 31 #