data_1GLL # _model_server_result.job_id dyU_Q1DE8RLk8zcV49EOJQ _model_server_result.datetime_utc '2024-12-04 09:44:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1gll # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":601}' # _entry.id 1GLL # _exptl.entry_id 1GLL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 505.208 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1GLL _cell.length_a 99.766 _cell.length_b 201.148 _cell.length_c 114.34 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1GLL _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D O2B ACP . Y ACP 601 1_555 C MG MG . Y MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc2 D O3G ACP . Y ACP 601 1_555 C MG MG . Y MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? metalc ? metalc3 G O1G ACP . O ACP 601 1_555 F MG MG . O MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.126 ? # _chem_comp.formula 'C11 H18 N5 O12 P3' _chem_comp.formula_weight 505.208 _chem_comp.id ACP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "ADENOSINE-5'-[BETA, GAMMA-METHYLENE]TRIPHOSPHATE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ACP doub 1 n n PG O2G ACP sing 2 n n PG O3G ACP sing 3 n n PG C3B ACP sing 4 n n O2G HOG2 ACP sing 5 n n O3G HOG3 ACP sing 6 n n PB O1B ACP doub 7 n n PB O2B ACP sing 8 n n PB C3B ACP sing 9 n n PB O3A ACP sing 10 n n O2B HOB2 ACP sing 11 n n C3B H3B1 ACP sing 12 n n C3B H3B2 ACP sing 13 n n PA O1A ACP doub 14 n n PA O2A ACP sing 15 n n PA O3A ACP sing 16 n n PA O5' ACP sing 17 n n O2A HOA2 ACP sing 18 n n O5' C5' ACP sing 19 n n C5' C4' ACP sing 20 n n C5' "H5'1" ACP sing 21 n n C5' "H5'2" ACP sing 22 n n C4' O4' ACP sing 23 n n C4' C3' ACP sing 24 n n C4' H4' ACP sing 25 n n O4' C1' ACP sing 26 n n C3' O3' ACP sing 27 n n C3' C2' ACP sing 28 n n C3' H3' ACP sing 29 n n O3' HO3' ACP sing 30 n n C2' O2' ACP sing 31 n n C2' C1' ACP sing 32 n n C2' H2' ACP sing 33 n n O2' HO2' ACP sing 34 n n C1' N9 ACP sing 35 n n C1' H1' ACP sing 36 n n N9 C8 ACP sing 37 n y N9 C4 ACP sing 38 n y C8 N7 ACP doub 39 n y C8 H8 ACP sing 40 n n N7 C5 ACP sing 41 n y C5 C6 ACP sing 42 n y C5 C4 ACP doub 43 n y C6 N6 ACP sing 44 n n C6 N1 ACP doub 45 n y N6 HN61 ACP sing 46 n n N6 HN62 ACP sing 47 n n N1 C2 ACP sing 48 n y C2 N3 ACP doub 49 n y C2 H2 ACP sing 50 n n N3 C4 ACP sing 51 n y # _atom_sites.entry_id 1GLL _atom_sites.fract_transf_matrix[1][1] 0.010023 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004971 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008746 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG Y 1 602 602 MG MG . D 3 ACP Y 1 601 601 ACP ACP . E 4 GOL Y 1 600 600 GOL GOL . F 2 MG O 1 602 602 MG MG . G 3 ACP O 1 601 601 ACP ACP . H 4 GOL O 1 600 600 GOL GOL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ACP . . . G 3 35.312 10.837 30.652 1 60.58 ? PG ACP 601 O 1 HETATM 2 O O1G ACP . . . G 3 33.844 10.354 30.137 1 60.58 ? O1G ACP 601 O 1 HETATM 3 O O2G ACP . . . G 3 35.743 10.116 32.2 1 60.58 ? O2G ACP 601 O 1 HETATM 4 O O3G ACP . . . G 3 36.516 10.643 29.437 1 60.58 ? O3G ACP 601 O 1 HETATM 5 P PB ACP . . . G 3 33.653 13.069 31.783 1 60.58 ? PB ACP 601 O 1 HETATM 6 O O1B ACP . . . G 3 32.556 13.007 30.664 1 60.58 ? O1B ACP 601 O 1 HETATM 7 O O2B ACP . . . G 3 33.503 11.931 32.839 1 60.58 ? O2B ACP 601 O 1 HETATM 8 C C3B ACP . . . G 3 35.174 12.772 30.917 1 60.58 ? C3B ACP 601 O 1 HETATM 9 P PA ACP . . . G 3 34.149 14.642 34.094 1 60.58 ? PA ACP 601 O 1 HETATM 10 O O1A ACP . . . G 3 35.286 13.68 34.347 1 60.58 ? O1A ACP 601 O 1 HETATM 11 O O2A ACP . . . G 3 33.031 14.364 35.037 1 60.58 ? O2A ACP 601 O 1 HETATM 12 O O3A ACP . . . G 3 33.614 14.486 32.574 1 60.58 ? O3A ACP 601 O 1 HETATM 13 O O5' ACP . . . G 3 34.675 16.165 34.221 1 60.58 ? O5' ACP 601 O 1 HETATM 14 C C5' ACP . . . G 3 35.639 16.588 33.277 1 60.58 ? C5' ACP 601 O 1 HETATM 15 C C4' ACP . . . G 3 35.152 17.799 32.529 1 60.58 ? C4' ACP 601 O 1 HETATM 16 O O4' ACP . . . G 3 34.853 18.837 33.468 1 60.58 ? O4' ACP 601 O 1 HETATM 17 C C3' ACP . . . G 3 36.143 18.413 31.556 1 60.58 ? C3' ACP 601 O 1 HETATM 18 O O3' ACP . . . G 3 35.613 18.372 30.228 1 60.58 ? O3' ACP 601 O 1 HETATM 19 C C2' ACP . . . G 3 36.401 19.85 32.056 1 60.58 ? C2' ACP 601 O 1 HETATM 20 O O2' ACP . . . G 3 36.427 20.762 30.984 1 60.58 ? O2' ACP 601 O 1 HETATM 21 C C1' ACP . . . G 3 35.2 20.101 32.932 1 60.58 ? C1' ACP 601 O 1 HETATM 22 N N9 ACP . . . G 3 35.327 21.09 34.034 1 60.58 ? N9 ACP 601 O 1 HETATM 23 C C8 ACP . . . G 3 35.917 20.408 35.052 1 60.58 ? C8 ACP 601 O 1 HETATM 24 N N7 ACP . . . G 3 35.997 21.076 36.184 1 60.58 ? N7 ACP 601 O 1 HETATM 25 C C5 ACP . . . G 3 35.374 22.273 35.926 1 60.58 ? C5 ACP 601 O 1 HETATM 26 C C6 ACP . . . G 3 35.144 23.436 36.718 1 60.58 ? C6 ACP 601 O 1 HETATM 27 N N6 ACP . . . G 3 35.554 23.611 37.988 1 60.58 ? N6 ACP 601 O 1 HETATM 28 N N1 ACP . . . G 3 34.473 24.435 36.139 1 60.58 ? N1 ACP 601 O 1 HETATM 29 C C2 ACP . . . G 3 34.118 24.307 34.864 1 60.58 ? C2 ACP 601 O 1 HETATM 30 N N3 ACP . . . G 3 34.288 23.285 34.035 1 60.58 ? N3 ACP 601 O 1 HETATM 31 C C4 ACP . . . G 3 34.926 22.287 34.62 1 60.58 ? C4 ACP 601 O 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #